View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13090_low_13 (Length: 386)
Name: NF13090_low_13
Description: NF13090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13090_low_13 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 368; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 11 - 386
Target Start/End: Complemental strand, 41148060 - 41147685
Alignment:
| Q |
11 |
cacagaagaggcgagtaataattctgatatgcactaggtcaaactatatttaatccttataattccttacaaaattcacaatagatttttcaatgaatca |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41148060 |
cacagaagaggcgagtaataattctgatatgcactaggtcaaactatatttaatccttataattccttacaaaattcacaatagatttttcaatgaatca |
41147961 |
T |
|
| Q |
111 |
ttgtagttttattactttgatataaaaacattgagaaatgcttctactagtagacaagatctaaaagatgaaattttattcaagcgttatgtggaaaata |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41147960 |
ttgtagttttattactttgatataaaaacattgagaaatgcttctactagtagacaagatctaaaagatgaaattttattcaagcgttatgtggaaaata |
41147861 |
T |
|
| Q |
211 |
tctactaatttttctgaaactgtatgctttacagaaggtgaagatgcatcctgccatgtatgaggatcctgtttctcttggtcaccaaggtacggtgaat |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
41147860 |
tctactaatttttctgaaactgtatgctttacagaaggtgaagatgcatcctgccatgtatgaggatcctgtttctcttggtcaccaaggtatggtgaat |
41147761 |
T |
|
| Q |
311 |
ttgagacgtagtgaaaggcttcccatctgtgttaaattgcatggtccagtcaagatgaaatcagaaaagtgtcctc |
386 |
Q |
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| T |
41147760 |
ttgagacgtagtgaaaggcttcctatctgtgttaaattgcatggtccagtcaagatgaaatcagaaaagtgtcctc |
41147685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 31 - 347
Target Start/End: Complemental strand, 41173045 - 41172725
Alignment:
| Q |
31 |
attctgatatgcactaggtcaaactatatttaatccttataattccttacaaaattcacaatagatttttcaatgaatcattgtagt-tttattactttg |
129 |
Q |
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||||||||||||||||||||||||| |||||||||||| | ||||| || | | | ||||||||||| |||| ||||||| |||| | |||||||||||| |
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| T |
41173045 |
attctgatatgcactaggtcaaactgtatttaatccttgtcattccctagaca-tccacaatagattcttcattgaatcactgtaatatttattactttg |
41172947 |
T |
|
| Q |
130 |
atataaaaacattgagaaatgcttctact-agtagacaagatctaaaagatgaaattttatt---caagcgttatgtggaaaatatctactaatttttct |
225 |
Q |
| |
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|||| |||||||||||||| ||| | | ||||||||| |||||||||| |||||||||| |||| ||||||||| ||| ||||||| | |||||| |
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| T |
41172946 |
atatcaaaacattgagaaagtcttttttttagtagacaatgtctaaaagattaaattttatttatcaagtgttatgtggtaaaaatctactgaattttct |
41172847 |
T |
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| Q |
226 |
gaaactgtatgctttacagaaggtgaagatgcatcctgccatgtatgaggatcctgtttctcttggtcaccaaggtacggtgaatttgagacgtagtgaa |
325 |
Q |
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| | ||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||| |||||| ||||||| |
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| T |
41172846 |
gcatacgtatgctttgcagaaggtgaagatgcatcctgccatgtatgaggatcaagttgctcttggtcaccaaggtacagtgaaattgagatatagtgaa |
41172747 |
T |
|
| Q |
326 |
aggcttcccatctgtgttaaat |
347 |
Q |
| |
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|||||||| ||| |||||||| |
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| T |
41172746 |
aggcttcctgtctctgttaaat |
41172725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 220 - 328
Target Start/End: Complemental strand, 41164486 - 41164378
Alignment:
| Q |
220 |
ttttctgaaactgtatgctttacagaaggtgaagatgcatcctgccatgtatgaggatcctgtttctcttggtcaccaaggtacggtgaatttgagacgt |
319 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||| ||||||||||| | |||||||| | |||||||||||||||| ||||| ||||||||| |
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| T |
41164486 |
ttttccgaaactgtatgctttacagaaggtgaagatgcattctgccatgtataataatcctgttccccttggtcaccaaggtagagtgaaattgagacgt |
41164387 |
T |
|
| Q |
320 |
agtgaaagg |
328 |
Q |
| |
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||||||||| |
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| T |
41164386 |
agtgaaagg |
41164378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 113; Significance: 4e-57; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 154 - 330
Target Start/End: Complemental strand, 32600758 - 32600582
Alignment:
| Q |
154 |
ctactagtagacaagatctaaaagatgaaattttattcaagcgttatgtggaaaatatctactaatttttctgaaactgtatgctttacagaaggtgaag |
253 |
Q |
| |
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|||||||| |||||||||||||||| ||||||||||||||| ||||| |||||||||||| | |||||||||||| ||||||||||||| || |||| |
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| T |
32600758 |
ctactagttgacaagatctaaaagaagaaattttattcaagtgttatacaaaaaatatctactgaattttctgaaactttatgctttacagatggggaag |
32600659 |
T |
|
| Q |
254 |
atgcatcctgccatgtatgaggatcctgtttctcttggtcaccaaggtacggtgaatttgagacgtagtgaaaggct |
330 |
Q |
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||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
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| T |
32600658 |
atgcatcctgccaagcatgaggatcctgtttctcttggtcaccaaggtacggtgaattttagacgtagtaaaaggct |
32600582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 91 - 278
Target Start/End: Complemental strand, 32632246 - 32632057
Alignment:
| Q |
91 |
atagatttttcaatgaatcattgtagttttattactttgatat-aaaaacattgagaaatgcttctactagtagacaagatctaaaagatgaaattttat |
189 |
Q |
| |
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||||||| |||||||||||| | | ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |
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| T |
32632246 |
atagattattcaatgaatcactttggttttattactttgataacaaaaacattgagaaatgcttctactagttgacaagatctaaaagaagaaattttat |
32632147 |
T |
|
| Q |
190 |
tcaagcgttatgtggaaaatatctactaatttttctgaaactg-tatgctttacagaaggtgaagatgcatcctgccatgtatgaggatc |
278 |
Q |
| |
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||||| |||||| |||||||||||| | ||||||||| ||| | |||||||||||||| ||||||| ||||||||| ||||||||||| |
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| T |
32632146 |
tcaagtgttatgcaaaaaatatctactgaattttctgaatctgttgtgctttacagaaggagaagatgaatcctgccaagtatgaggatc |
32632057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 154 - 330
Target Start/End: Complemental strand, 32582974 - 32582798
Alignment:
| Q |
154 |
ctactagtagacaagatctaaaagatgaaattttattcaagcgttatgtggaaaatatctactaatttttctgaaactgtatgctttacagaaggtgaag |
253 |
Q |
| |
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|||||||| |||||||||||||||| ||||||||||| ||| ||||| |||||||||||| | |||||||||||| ||||||||||| ||||||| |
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| T |
32582974 |
ctactagttgacaagatctaaaagaagaaattttatttaagttttatgcaaaaaatatctactgaattttctgaaactttatgctttacatttggtgaag |
32582875 |
T |
|
| Q |
254 |
atgcatcctgccatgtatgaggatcctgtttctcttggtcaccaaggtacggtgaatttgagacgtagtgaaaggct |
330 |
Q |
| |
|
|| |||||||||| ||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||| ||||||| |
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| T |
32582874 |
atacatcctgccaagtatgaggatcctgtttctcttggtcagcaaggtagggtgaatctgagacgtagtaaaaggct |
32582798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 99 - 278
Target Start/End: Complemental strand, 32658118 - 32657946
Alignment:
| Q |
99 |
ttcaatgaatcattgtagttttattactttgatataaaaacattgagaaatgcttctactagtagacaagatctaaaagatgaaattttattcaagcgtt |
198 |
Q |
| |
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|||||||||||| | | |||||||||||||||||| |||||||||||||||| |||||||||| || ||||||||||||| ||||||||||| ||| ||| |
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| T |
32658118 |
ttcaatgaatcactttggttttattactttgatatcaaaacattgagaaatgattctactagttgaaaagatctaaaagaagaaattttatttaagtgtt |
32658019 |
T |
|
| Q |
199 |
atgtggaaaatatctactaatttttctgaaactgtatgctttacagaaggtgaagatgcatcctgccatgtatgaggatc |
278 |
Q |
| |
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||| |||||||||||| | |||||| ||||||||| |||||||||||||| ||||||||| ||||||||||| |
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|
| T |
32658018 |
atgcaaaaaatatctactgaattttct-------tatgctttatagaaggtgaagatgaatcctgccaagtatgaggatc |
32657946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 135 - 326
Target Start/End: Complemental strand, 26301481 - 26301294
Alignment:
| Q |
135 |
aaaacattgagaaatgcttctactagtagacaagatctaaaagatgaaattttattcaagcgttatgtggaaaatatctactaatttttctgaaactgta |
234 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||| |||| ||||||||||||| | |||||||||||||||||||| | |||||||||| |||| |
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| T |
26301481 |
aaaaccttgagaaatgcttctacc--tagacaagatccaaaaaatgaaattttattt--gtattatgtggaaaatatctactgaattttctgaaagtgta |
26301386 |
T |
|
| Q |
235 |
tgctttacagaaggtgaagatgcatcctgccatgtatgaggatcctgtttctcttggtcaccaaggtacggtgaatttgagacgtagtgaaa |
326 |
Q |
| |
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| ||||| ||||| ||||||||||| ||| |||||||||||||| ||||||| ||||||||||||||| ||||| || ||| ||||||||| |
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| T |
26301385 |
ttttttaccgaaggcgaagatgcatcttgctatgtatgaggatccggtttctcgtggtcaccaaggtacagtgaaattaagatgtagtgaaa |
26301294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 117 - 235
Target Start/End: Original strand, 26301000 - 26301116
Alignment:
| Q |
117 |
ttttattactttgatataaaaacattgagaaatgcttctactagtagacaagatctaaaagatgaaattttattcaagcgttatgtggaaaatatctact |
216 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||||| |||||||||||||| || | || |||||| ||| | || |||||||||| |||| || |
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| T |
26301000 |
ttttattactttcatatcaaaacattgagaaatgcttctattagtagacaagatccaacaaataaaatttaatt--tgtgtcatgtggaaaagatctgct |
26301097 |
T |
|
| Q |
217 |
aatttttctgaaactgtat |
235 |
Q |
| |
|
| |||||||||| ||||| |
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| T |
26301098 |
gaattttctgaaaatgtat |
26301116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 205 - 279
Target Start/End: Original strand, 21015569 - 21015646
Alignment:
| Q |
205 |
aaaatatctactaatttttctgaaactgtatgctttacagaaggt---gaagatgcatcctgccatgtatgaggatcc |
279 |
Q |
| |
|
|||||||||||| | | |||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
21015569 |
aaaatatctactgaatattctgaaagtgtatcctttacagaaggtgaagaagatgcatcctgccatgtatgaggatcc |
21015646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 205 - 279
Target Start/End: Complemental strand, 26398846 - 26398769
Alignment:
| Q |
205 |
aaaatatctactaatttttctgaaactgtatgctttacagaaggtg---aagatgcatcctgccatgtatgaggatcc |
279 |
Q |
| |
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|||||||||||| | ||||||||| ||||| |||||||||||||| |||||||||||| |||||||||||||||| |
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| T |
26398846 |
aaaatatctactgaattttctgaacgtgtatcctttacagaaggtgaagaagatgcatccttccatgtatgaggatcc |
26398769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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