View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13090_low_14 (Length: 368)

Name: NF13090_low_14
Description: NF13090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13090_low_14
NF13090_low_14
[»] chr3 (16 HSPs)
chr3 (16-260)||(51225335-51225578)
chr3 (19-260)||(35494604-35494843)
chr3 (16-220)||(55094048-55094252)
chr3 (31-260)||(36316755-36316984)
chr3 (16-260)||(32771512-32771756)
chr3 (16-220)||(17257016-17257220)
chr3 (29-220)||(50380516-50380707)
chr3 (86-260)||(33446760-33446934)
chr3 (16-220)||(5635782-5635986)
chr3 (109-258)||(49002075-49002224)
chr3 (16-113)||(2182202-2182299)
chr3 (106-194)||(10730791-10730879)
chr3 (163-260)||(2182297-2182381)
chr3 (202-260)||(54476460-54476518)
chr3 (229-260)||(17256989-17257020)
chr3 (229-260)||(50380489-50380520)
[»] chr2 (12 HSPs)
chr2 (16-260)||(11364237-11364481)
chr2 (16-260)||(8667035-8667279)
chr2 (16-260)||(43890515-43890759)
chr2 (17-215)||(23048724-23048921)
chr2 (16-215)||(44077953-44078152)
chr2 (16-215)||(21632234-21632428)
chr2 (109-206)||(28732754-28732850)
chr2 (202-260)||(16144059-16144117)
chr2 (169-259)||(34055833-34055923)
chr2 (45-114)||(28720810-28720879)
chr2 (229-260)||(28732854-28732885)
chr2 (16-53)||(28720272-28720309)
[»] chr5 (5 HSPs)
chr5 (16-260)||(38163135-38163379)
chr5 (16-260)||(4887797-4888041)
chr5 (16-220)||(38973844-38974048)
chr5 (16-215)||(26365492-26365691)
chr5 (202-259)||(41082947-41083004)
[»] chr1 (9 HSPs)
chr1 (16-260)||(21259462-21259705)
chr1 (16-260)||(49695771-49696015)
chr1 (13-260)||(4475660-4475907)
chr1 (16-260)||(51548765-51549008)
chr1 (16-220)||(50877294-50877498)
chr1 (57-260)||(39277373-39277576)
chr1 (16-186)||(50503891-50504061)
chr1 (96-213)||(7057357-7057474)
chr1 (179-238)||(50503807-50503866)
[»] chr8 (6 HSPs)
chr8 (16-260)||(45309079-45309323)
chr8 (16-260)||(8951730-8951977)
chr8 (16-260)||(12279750-12279994)
chr8 (16-192)||(8348512-8348688)
chr8 (16-220)||(42074716-42074917)
chr8 (205-260)||(306060-306115)
[»] chr6 (6 HSPs)
chr6 (16-260)||(2017931-2018175)
chr6 (16-252)||(29873464-29873700)
chr6 (16-215)||(4792720-4792919)
chr6 (16-215)||(22516903-22517102)
chr6 (96-213)||(2173445-2173562)
chr6 (232-260)||(2173562-2173590)
[»] chr4 (10 HSPs)
chr4 (16-260)||(33167527-33167771)
chr4 (16-260)||(38828901-38829147)
chr4 (16-260)||(8143839-8144083)
chr4 (16-259)||(53060766-53061007)
chr4 (16-220)||(6033338-6033542)
chr4 (16-260)||(1139494-1139722)
chr4 (19-210)||(51543374-51543563)
chr4 (16-220)||(29775742-29775946)
chr4 (168-260)||(44271546-44271638)
chr4 (202-236)||(31761430-31761464)
[»] chr7 (3 HSPs)
chr7 (16-260)||(24279026-24279270)
chr7 (16-260)||(42437430-42437675)
chr7 (16-220)||(30504087-30504291)
[»] scaffold0854 (1 HSPs)
scaffold0854 (16-260)||(2798-3022)
[»] scaffold0286 (1 HSPs)
scaffold0286 (96-213)||(20478-20596)
[»] scaffold0016 (1 HSPs)
scaffold0016 (13-77)||(200903-200967)


Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 16 - 260
Target Start/End: Complemental strand, 51225578 - 51225335
Alignment:
Q  16 atcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaactagttta 115  Q
    |||||||||| |||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  51225578 atcagaacaatcacatactatttacattattaaaagtataatgatagtttctatttatatttcctcatcaactctgtt-atgaatgctacaactagttta 51225480  T
Q  116 catgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatggtggtgat 215  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  51225479 catgtgtttgaaaaattagaatgacactttatttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatggtggtgat 51225380  T
Q  216 gaagcagtggcagaaagcttcaagattttggaacaaagggttttg 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  51225379 gaagcagtggcagaaagcttcaagattttggaacaaagggttttg 51225335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 260
Target Start/End: Original strand, 35494604 - 35494843
Alignment:
Q  19 agaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaactagtttacat 118  Q
    ||||||| |||||||| |||||||||||||||||||| |||| ||||| |||||||||||||||||| |||||||  ||||||||||||||||||||| |    
T  35494604 agaacaatcacatactatttacattattaaaagtataatgatagtttcaatttatatttcctcatcatctctgttcctgaatgctacaactagtttacct 35494703  T
Q  119 gtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatggtggtgatgaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| |||||||||||||||||||||||    
T  35494704 gtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatac--gagagattcaatcggagcaaatccatggtggtgatgaa 35494801  T
Q  219 gcagtggcagaaagcttcaagattttggaacaaagggttttg 260  Q
    | ||||||||||||||||||||||||||||||||||||||||    
T  35494802 gtagtggcagaaagcttcaagattttggaacaaagggttttg 35494843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 16 - 220
Target Start/End: Original strand, 55094048 - 55094252
Alignment:
Q  16 atcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaactagttta 115  Q
    |||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  55094048 atcagaacaatcacatactgtttacattattaaaagtataatgatagtttctatttatatttcctcatcaactctgttcatgaatgctacaactagttta 55094147  T
Q  116 catgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatggtggtgat 215  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  55094148 catgtgtttgaaaaattagaatgtcactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatggtggtgat 55094247  T
Q  216 gaagc 220  Q
     ||||    
T  55094248 aaagc 55094252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 31 - 260
Target Start/End: Original strand, 36316755 - 36316984
Alignment:
Q  31 tactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaactagtttacatgtgtttgaaaaa 130  Q
    ||||||||||||||||||||||||| ||||  ||| |||||||||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||    
T  36316755 tactgtttacattattaaaagtataatgatactttatatttatatttcctcatcaactctgttcctgaatgctacaactagtttacttgtgtttgaaaaa 36316854  T
Q  131 ttagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatggtggtgatgaagcagtggcagaa 230  Q
    ||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||    
T  36316855 ttagaatgccactttactttctcgtgtttcagattacaattcgaatacgagagagattcaatcggagcaaatccatggtggtgatgaagcggtggcaaaa 36316954  T
Q  231 agcttcaagattttggaacaaagggttttg 260  Q
    ||||||||||||||||||||||||| ||||    
T  36316955 agcttcaagattttggaacaaagggctttg 36316984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 16 - 260
Target Start/End: Original strand, 32771512 - 32771756
Alignment:
Q  16 atcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaactagttta 115  Q
    |||||||||| |||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||  |||||||||||||||| |||    
T  32771512 atcagaacaatcacatattgtttacattattaaaagtataatgatagtttctatttatatttcctcatcaactctattcctgaatgctacaactagatta 32771611  T
Q  116 catgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatggtggtgat 215  Q
    ||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||  ||||||| ||||||| ||||    
T  32771612 catgtgtttaaaaaattagaatgtcactttacttcctcgtgattctggttacaattcgaatatgagagagattcaatcagagcaaattcatggtgttgat 32771711  T
Q  216 gaagcagtggcagaaagcttcaagattttggaacaaagggttttg 260  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||    
T  32771712 gaagcagtgacagaaagcttcaagattttggaacaaagagttttg 32771756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 17257220 - 17257016
Alignment:
Q  16 atcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaactagttta 115  Q
    |||||||||| || ||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||  | ||||||||||||||||||    
T  17257220 atcagaacaatcaaataatgtttacattattaaaagtataatgatagtttctatttatatttcctcatcaactctgttcctaaatgctacaactagttta 17257121  T
Q  116 catgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatggtggtgat 215  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  17257120 cctgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaatttgaatacgagagagattcaatcggagcaaatccatggtggtgat 17257021  T
Q  216 gaagc 220  Q
     ||||    
T  17257020 aaagc 17257016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 29 - 220
Target Start/End: Complemental strand, 50380707 - 50380516
Alignment:
Q  29 catactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaactagtttacatgtgtttgaaa 128  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||  |||||| |||||||||||||| |||||||||||    
T  50380707 catactgtttacattattaaaagtataatgatagtttctatttatatttcctcatcaactctgttcctgaatgttacaactagtttacctgtgtttgaaa 50380608  T
Q  129 aattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatggtggtgatgaagc 220  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||    
T  50380607 aattagaatgccattttacttcctcgtgtttctggtcacaattcgaatacgagagatattcaatcggagcaaatccatggtggtgataaagc 50380516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 86 - 260
Target Start/End: Original strand, 33446760 - 33446934
Alignment:
Q  86 actctgttgatgaatgctacaactagtttacatgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagag 185  Q
    ||||||||  ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||    
T  33446760 actctgttcctgaatgctacaactagtttacctgtgtttgaaaaattagaatgtcactttacttcctcgtgtttctggttacaattcgaatacgagaaag 33446859  T
Q  186 attcaatcgaagcaaatccatggtggtgatgaagcagtggcagaaagcttcaagattttggaacaaagggttttg 260  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  33446860 attcaatcggagcaaatccatggtggtgatgaagcagtgacagaaagcttcaagattttggaacaaagggttttg 33446934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 5635986 - 5635782
Alignment:
Q  16 atcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaactagttta 115  Q
    |||||||||| |||||| |||||||||||||||||||||| || | ||||||||||||||| | ||||||||||||||  | || |||||||||||||||    
T  5635986 atcagaacaatcacatattgtttacattattaaaagtataatggtagtttctatttatattccatcatcaactctgtttctaaaagctacaactagttta 5635887  T
Q  116 catgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatggtggtgat 215  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||    
T  5635886 cctgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaattcatagtggtgat 5635787  T
Q  216 gaagc 220  Q
     ||||    
T  5635786 aaagc 5635782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 109 - 258
Target Start/End: Complemental strand, 49002224 - 49002075
Alignment:
Q  109 tagtttacatgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatgg 208  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||    
T  49002224 tagtttacctgtgtttgaaaaattagaatgtcactttacttcctcgtgtttttagttacaattcgaatacgagagagattcaatcggagcaaatccatgg 49002125  T
Q  209 tggtgatgaagcagtggcagaaagcttcaagattttggaacaaagggttt 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49002124 tggtgatgaagcagtggcagaaagcttcaagattttggaacaaagggttt 49002075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 16 - 113
Target Start/End: Original strand, 2182202 - 2182299
Alignment:
Q  16 atcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaactagtt 113  Q
    |||||||||| ||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||  ||||||||||||||||||    
T  2182202 atcagaacaatcacatactgtttacattattaaaagtataatgatagtttcaatttatatttcctcatcaactctgttcctgaatgctacaactagtt 2182299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 106 - 194
Target Start/End: Complemental strand, 10730879 - 10730791
Alignment:
Q  106 aactagtttacatgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcg 194  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||    
T  10730879 aactagtttacctgtgtttgaaaaattagaattccactttacttcctcgtgtttttggttaaaatttgaatacgagagagattcaatcg 10730791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 163 - 260
Target Start/End: Original strand, 2182297 - 2182381
Alignment:
Q  163 gttacaattcgaatacgagagagattcaatcgaagcaaatccatggtggtgatgaagcagtggcagaaagcttcaagattttggaacaaagggttttg 260  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||||||||||             ||||||||||||||||||||||||||||||||    
T  2182297 gttacaattcgaatacgagagagatttaatcggagcaaatccatggtggtgat-------------aaagcttcaagattttggaacaaagggttttg 2182381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 202 - 260
Target Start/End: Complemental strand, 54476518 - 54476460
Alignment:
Q  202 tccatggtggtgatgaagcagtggcagaaagcttcaagattttggaacaaagggttttg 260  Q
    |||||||||||||||||  ||||||||||| ||||||||||||||||||| ||||||||    
T  54476518 tccatggtggtgatgaaatagtggcagaaatcttcaagattttggaacaaggggttttg 54476460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 229 - 260
Target Start/End: Complemental strand, 17257020 - 17256989
Alignment:
Q  229 aaagcttcaagattttggaacaaagggttttg 260  Q
    ||||||||||||||||||||||||||||||||    
T  17257020 aaagcttcaagattttggaacaaagggttttg 17256989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 229 - 260
Target Start/End: Complemental strand, 50380520 - 50380489
Alignment:
Q  229 aaagcttcaagattttggaacaaagggttttg 260  Q
    ||||||||||||||||||||||||||||||||    
T  50380520 aaagcttcaagattttggaacaaagggttttg 50380489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 16 - 260
Target Start/End: Complemental strand, 11364481 - 11364237
Alignment:
Q  16 atcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaactagttta 115  Q
    |||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  11364481 atcagaacaatcacatactgtttacattattaaaagtataatgatagtttctatttatatttcctcatcaactctgttcctgaatgctacaactagttta 11364382  T
Q  116 catgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatggtggtgat 215  Q
    | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  11364381 cctgtgattgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatggtggtgat 11364282  T
Q  216 gaagcagtggcagaaagcttcaagattttggaacaaagggttttg 260  Q
    |||||||||| ||||||||||||||||||||||||||||||||||    
T  11364281 gaagcagtggtagaaagcttcaagattttggaacaaagggttttg 11364237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 16 - 260
Target Start/End: Original strand, 8667035 - 8667279
Alignment:
Q  16 atcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaactagttta 115  Q
    |||| ||||| ||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||  ||| ||||||||||||||||    
T  8667035 atcataacaatcacatactgtttacattattaaaagtataatgatagtttcaatttatatttcctcatcaactctgttactgattgctacaactagttta 8667134  T
Q  116 catgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatggtggtgat 215  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||||||| |||||    
T  8667135 cctgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattagaatacgagagagattcaatcagagcaaatccatggtagtgat 8667234  T
Q  216 gaagcagtggcagaaagcttcaagattttggaacaaagggttttg 260  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||    
T  8667235 gaagaagtggcagaaagcttcaagattttggaacaaagagttttg 8667279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 16 - 260
Target Start/End: Complemental strand, 43890759 - 43890515
Alignment:
Q  16 atcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaactagttta 115  Q
    |||||||||| |||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||  ||| |||||||||||||||||||||    
T  43890759 atcagaacaatcacatactatttacattattaaaagtataatgatagtttctatttatatttcctcatcaacttcgttcatgaatgctacaactagttta 43890660  T
Q  116 catgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatggtggtgat 215  Q
    | ||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |    
T  43890659 cctgtgtttgaaaaattagaatgtcactttacttccccgtgtttcaggttacaattcgaatacgagagagattcaatcaaagcaaatccatggtggtggt 43890560  T
Q  216 gaagcagtggcagaaagcttcaagattttggaacaaagggttttg 260  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||    
T  43890559 gaagcagtgacagaaagcttcaagattttggaacaaaggattttg 43890515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 23048921 - 23048724
Alignment:
Q  17 tcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaactagtttac 116  Q
    ||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  23048921 tcagaacaatcacatactgtttacattattaaaagtataatgatagtttctatttatatttcctcatcaactctgttcctgaatgctacaactagtttac 23048822  T
Q  117 atgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatggtggtgat 215  Q
     ||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||  |||||||||||||| ||||||| ||||||||||||    
T  23048821 ctgtgtttgaaaaattagaatgccgctttacttcctcgtgtttct-gttacaatttgaatacctgagagattcaatcggagcaaattcatggtggtgat 23048724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 16 - 215
Target Start/End: Original strand, 44077953 - 44078152
Alignment:
Q  16 atcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaactagttta 115  Q
    |||||||||| |||||| |||||||||||| ||||||||| |||| |||||||||||||||| |||||||||| ||||  ||||||||||||||||||||    
T  44077953 atcagaacaatcacatattgtttacattatcaaaagtataatgatagtttctatttatattttctcatcaactatgttcgtgaatgctacaactagttta 44078052  T
Q  116 catgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatggtggtgat 215  Q
    | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||| |||||||||    
T  44078053 cctgtgtttgaaaaattataatgccactttacttcctcgtgtttctggttacaattcgaatacgagagaaattcaatgggagcaaatccacggtggtgat 44078152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 16 - 215
Target Start/End: Complemental strand, 21632428 - 21632234
Alignment:
Q  16 atcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaactagttta 115  Q
    |||| ||||| ||||||||||||||||||||||||||||| ||||  |||||||||||||     |||||||| ||||  ||||||||||||||||||||    
T  21632428 atcaaaacaatcacatactgtttacattattaaaagtataatgatattttctatttatat-----catcaactttgttcctgaatgctacaactagttta 21632334  T
Q  116 catgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatggtggtgat 215  Q
    | || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  21632333 cctgagtttgaaaaattagaatgccactttacttcctcgtgtttttggttacaattcgaatacgaaagagattcaatcggagcaaatccatggtggtgat 21632234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 109 - 206
Target Start/End: Original strand, 28732754 - 28732850
Alignment:
Q  109 tagtttacatgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccat 206  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  28732754 tagtttacatgtgtttgaaaaat-agaataccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccat 28732850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 202 - 260
Target Start/End: Complemental strand, 16144117 - 16144059
Alignment:
Q  202 tccatggtggtgatgaagcagtggcagaaagcttcaagattttggaacaaagggttttg 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  16144117 tccatggtggtgatgaagcagtggcagaaagcttcaagattttggaacaacgggttttg 16144059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 169 - 259
Target Start/End: Original strand, 34055833 - 34055923
Alignment:
Q  169 attcgaatacgagagagattcaatcgaagcaaatccatggtggtgatgaagcagtggcagaaagcttcaagattttggaacaaagggtttt 259  Q
    ||||||| ||||||||||||  |||| |||||||||||||||||| ||||||||| |||||||||||| |||||||| ||  |||||||||    
T  34055833 attcgaacacgagagagatttgatcggagcaaatccatggtggtgttgaagcagttgcagaaagcttcgagattttgaaaggaagggtttt 34055923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 45 - 114
Target Start/End: Original strand, 28720810 - 28720879
Alignment:
Q  45 ttaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaactagttt 114  Q
    ||||||||||| ||||  ||||||||||||||| |||||||||||| ||  |||||||||||||||||||    
T  28720810 ttaaaagtataatgataatttctatttatatttactcatcaactctattcctgaatgctacaactagttt 28720879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 229 - 260
Target Start/End: Original strand, 28732854 - 28732885
Alignment:
Q  229 aaagcttcaagattttggaacaaagggttttg 260  Q
    ||||||||||||||||||||||||||||||||    
T  28732854 aaagcttcaagattttggaacaaagggttttg 28732885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 28720272 - 28720309
Alignment:
Q  16 atcagaacaaacacatactgtttacattattaaaagta 53  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  28720272 atcagaacaatcacatactttttacattattaaaagta 28720309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 201; Significance: 1e-109; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 16 - 260
Target Start/End: Original strand, 38163135 - 38163379
Alignment:
Q  16 atcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaactagttta 115  Q
    |||||||||| |||||| |||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  38163135 atcagaacaatcacatattgtttacattattaaaagtataatgacagtttctatttatatttcctcatcaactctgttcctgaatgctacaactagttta 38163234  T
Q  116 catgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatggtggtgat 215  Q
    | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  38163235 cctgtgtttgaaaaattagaatgccattttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatggtggtgat 38163334  T
Q  216 gaagcagtggcagaaagcttcaagattttggaacaaagggttttg 260  Q
    ||||||||||||||||||||||||||||||||||||||| |||||    
T  38163335 gaagcagtggcagaaagcttcaagattttggaacaaaggattttg 38163379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 16 - 260
Target Start/End: Complemental strand, 4888041 - 4887797
Alignment:
Q  16 atcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaactagttta 115  Q
    |||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||| |||  ||||||||||||||||||||    
T  4888041 atcagaacaatcacatactgtttacattattaaaagtataatgatagtttctatttatatttcctcgtcaactcggttcctgaatgctacaactagttta 4887942  T
Q  116 catgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatggtggtgat 215  Q
    | ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  4887941 cctgtgtttgaaaaattagaatgtcacttcacttcctcgtgtttctggttacaattcgaatacgagagtgattcaatcggagcaaatccatggtggtgat 4887842  T
Q  216 gaagcagtggcagaaagcttcaagattttggaacaaagggttttg 260  Q
    |||||||||||||||||||| |||||||||||||||||| |||||    
T  4887841 gaagcagtggcagaaagctttaagattttggaacaaaggattttg 4887797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 38974048 - 38973844
Alignment:
Q  16 atcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaactagttta 115  Q
    |||||||||| |||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||| ||||  ||||||||||||||||||||    
T  38974048 atcagaacaatcacatactgtttacattattaaaagtataaggatagtttctatttatatttcctcatcaactttgttcctgaatgctacaactagttta 38973949  T
Q  116 catgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatggtggtgat 215  Q
    ||||||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  38973948 catgtgtttgaaaaattagaatgtcactttacttccttatgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatggtggtgat 38973849  T
Q  216 gaagc 220  Q
     ||||    
T  38973848 aaagc 38973844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 16 - 215
Target Start/End: Original strand, 26365492 - 26365691
Alignment:
Q  16 atcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaactagttta 115  Q
    |||||||||| |||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||| | ||  ||||||||||||||||||||    
T  26365492 atcagaacaatcacatactgttttcattattaaaagtataatgatagtttctatttatatttcctcatcaactatattcctgaatgctacaactagttta 26365591  T
Q  116 catgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatggtggtgat 215  Q
    | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||    
T  26365592 cctgtgtttgaaaaattagaatgtcactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatgggagcaaatccatggcggtgat 26365691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 202 - 259
Target Start/End: Original strand, 41082947 - 41083004
Alignment:
Q  202 tccatggtggtgatgaagcagtggcagaaagcttcaagattttggaacaaagggtttt 259  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  41082947 tccatggtggtgatgaagtagtggcagaaagctttaagattttggaacaaagggtttt 41083004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 16 - 260
Target Start/End: Original strand, 21259462 - 21259705
Alignment:
Q  16 atcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaactagttta 115  Q
    |||||||||| ||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||| || |||||||||||||||||||||    
T  21259462 atcagaacaatcacatactgtttacattattaaaagtataatgatagtttctttttatatttcctcatcaactctattcatgaatgctacaactagttta 21259561  T
Q  116 catgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatggtggtgat 215  Q
    |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  21259562 catgtgtttgaaaa-ttagaatgccactttacttcctcgtgtttatggttacaattcgaatacgagagagattcaatcggagcaaatccatggtggtgat 21259660  T
Q  216 gaagcagtggcagaaagcttcaagattttggaacaaagggttttg 260  Q
    ||||||||||||||||||||||||||||||||||||| |||||||    
T  21259661 gaagcagtggcagaaagcttcaagattttggaacaaatggttttg 21259705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 16 - 260
Target Start/End: Complemental strand, 49696015 - 49695771
Alignment:
Q  16 atcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaactagttta 115  Q
    |||||||||| ||||||||||||||||||||||||||||| |||  |||||||||||||||| |||||||||||||||  ||||||||||||||||||||    
T  49696015 atcagaacaatcacatactgtttacattattaaaagtataatgacagtttctatttatattttctcatcaactctgttcctgaatgctacaactagttta 49695916  T
Q  116 catgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatggtggtgat 215  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  49695915 cctgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagatttaatcggagcaaatccatggtggtgat 49695816  T
Q  216 gaagcagtggcagaaagcttcaagattttggaacaaagggttttg 260  Q
    |||||| |||||||||||||||| |||||||||||||||||||||    
T  49695815 gaagcaatggcagaaagcttcaaaattttggaacaaagggttttg 49695771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 13 - 260
Target Start/End: Original strand, 4475660 - 4475907
Alignment:
Q  13 aatatcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaactagt 112  Q
    ||||||||||||| |||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  4475660 aatatcagaacaatcacatattgtttacattattaaaagtataatgatagtttctatttatatttcctcatcaactctgttcctgaatgctacaactagt 4475759  T
Q  113 ttacatgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatggtggt 212  Q
    |||| ||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||    
T  4475760 ttacctgtgtttgaaaaattagaatgtcactttacttcttcgtgtttctggttagaattcgaatacgagagagattcaatcggagcaaatccatggtagt 4475859  T
Q  213 gatgaagcagtggcagaaagcttcaagattttggaacaaagggttttg 260  Q
    ||||||||||||||||||| |||||||||||||||||||||| |||||    
T  4475860 gatgaagcagtggcagaaaacttcaagattttggaacaaaggattttg 4475907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 16 - 260
Target Start/End: Complemental strand, 51549008 - 51548765
Alignment:
Q  16 atcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaactagttta 115  Q
    |||||||||| | |||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||  ||||||||||||||||||||    
T  51549008 atcagaacaatcgcatattgtttacattattaaaagtataatgatagtttctatttatatttcctcatcaactttgttcctgaatgctacaactagttta 51548909  T
Q  116 catgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatggtggtgat 215  Q
    | |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  51548908 cctgtgtttgaaaaattagaatgccactttacctcctcgtgtttctagttacaattcgaatacgagagagattcaatcggagcaaatccat-gtggtgat 51548810  T
Q  216 gaagcagtggcagaaagcttcaagattttggaacaaagggttttg 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  51548809 gaagcagtggcagaaagcttcaagattttggaacaaagggttttg 51548765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 16 - 220
Target Start/End: Original strand, 50877294 - 50877498
Alignment:
Q  16 atcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaactagttta 115  Q
    |||||||||| |||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||| ||  ||||||||||||||||||||    
T  50877294 atcagaacaatcacatactgtttacatcattaaaagtataatgatagtttctatttatatttcctcatcaactctatttctgaatgctacaactagttta 50877393  T
Q  116 catgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatggtggtgat 215  Q
    | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  50877394 cctgtgtttgaaaaattagaatgtcactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatctatggtggtgat 50877493  T
Q  216 gaagc 220  Q
     ||||    
T  50877494 aaagc 50877498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 57 - 260
Target Start/End: Complemental strand, 39277576 - 39277373
Alignment:
Q  57 tgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaactagtttacatgtgtttgaaaaattagaatgccactttacttcctcgtg 156  Q
    |||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  39277576 tgatagtttctatttatatttcctcatcaactctgttcctgaatgctacaactagtttacctgtgtttgaaaaattagaatgtcactttacttcctcgtg 39277477  T
Q  157 tttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatggtggtgatgaagcagtggcagaaagcttcaagattttggaacaaagggt 256  Q
    ||| ||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||  ||||||||||| |||||| |||||||||||||||||    
T  39277476 tttatggttacaattcgaataggagagagattcaatcgtagcaaatccatgttggtgatgaactagtggcagaaaacttcaaaattttggaacaaagggt 39277377  T
Q  257 tttg 260  Q
    ||||    
T  39277376 tttg 39277373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 16 - 186
Target Start/End: Complemental strand, 50504061 - 50503891
Alignment:
Q  16 atcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaactagttta 115  Q
    |||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||  ||||||||||||||||||||    
T  50504061 atcagaacaatcacatactgtttacattattaaaagtataatgatagtttctatttatattttctcatcaactctgttcctgaatgctacaactagttta 50503962  T
Q  116 catgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagaga 186  Q
    | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  50503961 cctgtgtttgaaaaattagaatgccattttacttcctcgtgtttctggttacaattcgaatacgagagaga 50503891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 96 - 213
Target Start/End: Complemental strand, 7057474 - 7057357
Alignment:
Q  96 tgaatgctacaactagtttacatgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcga 195  Q
    |||||||||||| |||||||| |||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||     
T  7057474 tgaatgctacaattagtttacctgtgtttgaaaaattagaataccactttacctcctcgtgtttttggttacaattcgaatacgagagagattcaatcgg 7057375  T
Q  196 agcaaatccatggtggtg 213  Q
    ||||||||||||| ||||    
T  7057374 agcaaatccatggcggtg 7057357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 50503866 - 50503807
Alignment:
Q  179 gagagagattcaatcgaagcaaatccatggtggtgatgaagcagtggcagaaagcttcaa 238  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  50503866 gagagagattcaatcggagcaaatccatggtggtgatgaagcagtggcataaagcttcaa 50503807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 16 - 260
Target Start/End: Original strand, 45309079 - 45309323
Alignment:
Q  16 atcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaactagttta 115  Q
    |||||||||| ||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||| ||||  ||||||||||||||||||||    
T  45309079 atcagaacaatcacatactgtttacattattaaaagcataatgatagtttctatttatatttcctcatcaactatgttcctgaatgctacaactagttta 45309178  T
Q  116 catgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatggtggtgat 215  Q
    |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  45309179 cccgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatggtggtgat 45309278  T
Q  216 gaagcagtggcagaaagcttcaagattttggaacaaagggttttg 260  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||    
T  45309279 gaagcagtggcataaagcttcaagattttgaaacaaagggttttg 45309323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 16 - 260
Target Start/End: Complemental strand, 8951977 - 8951730
Alignment:
Q  16 atcagaacaaacacatactgtttacattattaaaagtatagt---gattgtttctatttatatttcctcatcaactctgttgatgaatgctacaactagt 112  Q
    |||||||||| ||||||||||||||||||||||||||||| |   ||| ||||||||||||||||||||||||||| ||||  ||||||||||||||| |    
T  8951977 atcagaacaatcacatactgtttacattattaaaagtataattatgatagtttctatttatatttcctcatcaactatgttcctgaatgctacaactaat 8951878  T
Q  113 ttacatgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatggtggt 212  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  8951877 ttacctgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatggtggt 8951778  T
Q  213 gatgaagcagtggcagaaagcttcaagattttggaacaaagggttttg 260  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  8951777 gatgaagcagtggtagaaagcttcaagattttggaacaaagggttttg 8951730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 16 - 260
Target Start/End: Original strand, 12279750 - 12279994
Alignment:
Q  16 atcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaactagttta 115  Q
    |||||||||| |||||||| |||||||||||||||||||| |||| ||||||||||| ||||||||||||||| ||||  ||||||||||||||||||||    
T  12279750 atcagaacaatcacatactatttacattattaaaagtataatgatagtttctatttacatttcctcatcaactttgttcctgaatgctacaactagttta 12279849  T
Q  116 catgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatggtggtgat 215  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||    
T  12279850 cctgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcaaatacgagagagattcaatcggagcaaatccgtggtggtgat 12279949  T
Q  216 gaagcagtggcagaaagcttcaagattttggaacaaagggttttg 260  Q
    |||| ||||||||||||||||||||||||||||||||||||||||    
T  12279950 gaaggagtggcagaaagcttcaagattttggaacaaagggttttg 12279994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 16 - 192
Target Start/End: Original strand, 8348512 - 8348688
Alignment:
Q  16 atcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaactagttta 115  Q
    |||||||||| |||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||| ||||||  ||||||||||||||||||||    
T  8348512 atcagaacaatcacatactgtttacataattaaaagtataatgatagtttctatttatatttcctcatcaattctgttcctgaatgctacaactagttta 8348611  T
Q  116 catgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaat 192  Q
    ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||    
T  8348612 catatgtttgaaaaattagaatgccactttacttcctcgtgtatctggttacaattcgaatacgtgagagaatcaat 8348688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 16 - 220
Target Start/End: Original strand, 42074716 - 42074917
Alignment:
Q  16 atcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaactagttta 115  Q
    |||||||||| |  |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||   || |||||||||||||||||||||    
T  42074716 atcagaacaatcgtatactgtttacattattaaaagtataatgatagtttctatttatatttcctcatcaact---ttcatgaatgctacaactagttta 42074812  T
Q  116 catgtgttt--gaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatggtggtg 213  Q
    | |||||||  ||||||| |||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||  ||||||||||||||||||    
T  42074813 cctgtgtttttgaaaaatcagaatgccactttacttcctcgtgtttctggtcacaattcgaatac--gagagattcaatcagagcaaatccatggtggtg 42074910  T
Q  214 atgaagc 220  Q
    || ||||    
T  42074911 ataaagc 42074917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 205 - 260
Target Start/End: Original strand, 306060 - 306115
Alignment:
Q  205 atggtggtgatgaagcagtggcagaaagcttcaagattttggaacaaagggttttg 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  306060 atggtggtgatgaagcagtggcagaaagcttcaagattttggaacaaagggttttg 306115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 16 - 260
Target Start/End: Original strand, 2017931 - 2018175
Alignment:
Q  16 atcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaactagttta 115  Q
    |||||||||| |||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||  ||||||||||||||||||||    
T  2017931 atcagaacaatcacatactgtctacattattaaaagtataatgatagtttctatttatatttcctcatcaactttgttcctgaatgctacaactagttta 2018030  T
Q  116 catgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatggtggtgat 215  Q
    | |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  2018031 cctgtgtttgaaaaattaaaatgtcactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaattggagcaaatccatggtggtgat 2018130  T
Q  216 gaagcagtggcagaaagcttcaagattttggaacaaagggttttg 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  2018131 gaagcagtggcagaaagcttcaagattttggaacaaagggttttg 2018175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 16 - 252
Target Start/End: Complemental strand, 29873700 - 29873464
Alignment:
Q  16 atcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaactagttta 115  Q
    |||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||  ||||||||||||||||||||    
T  29873700 atcagaacaatcacatactgtttacattattaaaagtataatgatagtttctatttatatttcctcatcaactttgttcctgaatgctacaactagttta 29873601  T
Q  116 catgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatggtggtgat 215  Q
    | ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  29873600 cctgtgtttaaaaaattagaatgtcactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatggtggtgat 29873501  T
Q  216 gaagcagtggcagaaagcttcaagattttggaacaaa 252  Q
    |||||||||| ||||||||||||||||||||||||||    
T  29873500 gaagcagtggtagaaagcttcaagattttggaacaaa 29873464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 16 - 215
Target Start/End: Complemental strand, 4792919 - 4792720
Alignment:
Q  16 atcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaactagttta 115  Q
    |||||||||| |||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  4792919 atcagaacaatcacatattgtttacattattaaaagtataatgatagtttctatttatatttcctcatcaactctgttcctgaatgctacaactagttta 4792820  T
Q  116 catgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatggtggtgat 215  Q
      | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| | |||||||||    
T  4792819 tctttgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacagttcgaatacgagagagattcaatcggagcaaatctacggtggtgat 4792720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 16 - 215
Target Start/End: Original strand, 22516903 - 22517102
Alignment:
Q  16 atcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaactagttta 115  Q
    |||||||||| |||||| |||||||||||||||||||||| ||||  ||||||||||||||||| ||| ||||| |||  ||||||||||||| ||||||    
T  22516903 atcagaacaatcacatattgtttacattattaaaagtataatgatattttctatttatatttccccattaactccgttcctgaatgctacaacaagttta 22517002  T
Q  116 catgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatggtggtgat 215  Q
    | ||||||||||||||||||||| ||||||| |||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  22517003 cctgtgtttgaaaaattagaatgtcactttaattcctcgtgtttttggttacaattcaaatacgagagagattcaatcggagcaaatccatggtggtgat 22517102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 96 - 213
Target Start/End: Original strand, 2173445 - 2173562
Alignment:
Q  96 tgaatgctacaactagtttacatgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcga 195  Q
    |||||||||||| |||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  2173445 tgaatgctacaattagtttacctctgtttgaaaaattagaatgccactttacttccttgtgtttctggttacaattcaaatacgagagagattcaatcga 2173544  T
Q  196 agcaaatccatggtggtg 213  Q
    ||||||||||||||||||    
T  2173545 agcaaatccatggtggtg 2173562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 260
Target Start/End: Original strand, 2173562 - 2173590
Alignment:
Q  232 gcttcaagattttggaacaaagggttttg 260  Q
    |||||||||||||||||||||||||||||    
T  2173562 gcttcaagattttggaacaaagggttttg 2173590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 16 - 260
Target Start/End: Original strand, 33167527 - 33167771
Alignment:
Q  16 atcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaactagttta 115  Q
    |||||||||| |||||||| |||||||||||||||||||| | || ||||||||||||||||||||||||||| ||||  ||||||||||||||||||||    
T  33167527 atcagaacaatcacatactatttacattattaaaagtataataatagtttctatttatatttcctcatcaactgtgttcctgaatgctacaactagttta 33167626  T
Q  116 catgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatggtggtgat 215  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||    
T  33167627 cctgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagatttaatcagagcaaatccatggtggtgat 33167726  T
Q  216 gaagcagtggcagaaagcttcaagattttggaacaaagggttttg 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  33167727 gaagcagtggcagaaagcttcaagattttggaacaaagggttttg 33167771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 16 - 260
Target Start/End: Complemental strand, 38829147 - 38828901
Alignment:
Q  16 atcagaacaaacacatac--tgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaactagtt 113  Q
    |||||||||| ||||||   |||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||  ||||||||||||||||||    
T  38829147 atcagaacaatcacatatattgtttacattattaaaagtataatgatagtttctatttatatttcctcatcaactttgttcctgaatgctacaactagtt 38829048  T
Q  114 tacatgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatggtggtg 213  Q
    ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  38829047 tacctgtgtttgaaaaattaaaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatggtggtg 38828948  T
Q  214 atgaagcagtggcagaaagcttcaagattttggaacaaagggttttg 260  Q
     ||||||||| ||||||||||||||||||||||||||||||||||||    
T  38828947 gtgaagcagtcgcagaaagcttcaagattttggaacaaagggttttg 38828901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 16 - 260
Target Start/End: Original strand, 8143839 - 8144083
Alignment:
Q  16 atcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaactagttta 115  Q
    |||||||||| |||||| |||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||  |||||||||||| |||||||    
T  8143839 atcagaacaatcacataatgtttacattattaaaagtataatgatagtttctatttatatttcctgatcaactctgttcctgaatgctacaagtagttta 8143938  T
Q  116 catgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatggtggtgat 215  Q
    | ||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||    
T  8143939 cctgtttttggaaaattagaatgccactttacttcctcgtgtttctggttacaatttgaatacgagagagattcaattggagcaaatccatggtggtgat 8144038  T
Q  216 gaagcagtggcagaaagcttcaagattttggaacaaagggttttg 260  Q
    |||||||| ||||||||||||||||||||||||||||||||||||    
T  8144039 gaagcagtagcagaaagcttcaagattttggaacaaagggttttg 8144083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 16 - 259
Target Start/End: Complemental strand, 53061007 - 53060766
Alignment:
Q  16 atcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaactagttta 115  Q
    |||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| | ||  ||||||||||||||||||||    
T  53061007 atcagaacaatcacatactgtttacattattaaaagtataatgatagtttctatttatatttcctcatcaactgtattcctgaatgctacaactagttta 53060908  T
Q  116 catgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatggtggtgat 215  Q
    |  ||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||| ||||| |||| ||||||||||||||||||||    
T  53060907 c--gtgtttgaaaaattacaatgtcactttacttcctcgtgtttctggttacaatttgaatacgagagtgattcgatcggagcaaatccatggtggtgat 53060810  T
Q  216 gaagcagtggcagaaagcttcaagattttggaacaaagggtttt 259  Q
    |||| ||||| |||||||||||||||||||||||||||||||||    
T  53060809 gaagtagtggtagaaagcttcaagattttggaacaaagggtttt 53060766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 16 - 220
Target Start/End: Original strand, 6033338 - 6033542
Alignment:
Q  16 atcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaactagttta 115  Q
    |||||||||| |||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  6033338 atcagaacaatcacatactatttacattattaaaagtataatgatagtttctatttatatttcctcatcaactttgttcatgaatgctacaactagttta 6033437  T
Q  116 catgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatggtggtgat 215  Q
    ||||||||||||| |||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  6033438 catgtgtttgaaacattaaaatgtcactttacttcctcctgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatggtggtgat 6033537  T
Q  216 gaagc 220  Q
     ||||    
T  6033538 aaagc 6033542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 16 - 260
Target Start/End: Complemental strand, 1139722 - 1139494
Alignment:
Q  16 atcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaactagttta 115  Q
    |||||| ||| |||||| |||||||||||||||||||||| |||| |||||||||||||||||||                |||||||||||||||||||    
T  1139722 atcagaccaatcacataatgtttacattattaaaagtataatgatagtttctatttatatttcct----------------gaatgctacaactagttta 1139639  T
Q  116 catgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatggtggtgat 215  Q
    |  ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1139638 cccgtgtttgaaaaattagaatgccactttacttcctcatgtttctggttacaattcaaatacgagagagattcaatcgaagcaaatccatggtggtgat 1139539  T
Q  216 gaagcagtggcagaaagcttcaagattttggaacaaagggttttg 260  Q
    |||||||||||||||| ||||||||||||||||||||||||||||    
T  1139538 gaagcagtggcagaaaacttcaagattttggaacaaagggttttg 1139494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 19 - 210
Target Start/End: Complemental strand, 51543563 - 51543374
Alignment:
Q  19 agaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaactagtttacat 118  Q
    ||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||||| |    
T  51543563 agaacaatcacatactgtttacattattaaaagtataatgatagtttctatttatatttcctcatcaactctgttcttgaatgctacaactagtttacct 51543464  T
Q  119 gtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatggtg 210  Q
     ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||  |||||||||||| |||||||||||||||    
T  51543463 ttgtttgaaaaattagaatgcccctttacttcctcgtgtttttggttacaattcgaatacga--gagattcaatcggagcaaatccatggtg 51543374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 29775946 - 29775742
Alignment:
Q  16 atcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaactagttta 115  Q
    |||||||||| |||||||||||| |||||||||||||||| |||| |||| |||||||||||||||||||||||| ||  ||||||||||||||||||||    
T  29775946 atcagaacaatcacatactgtttgcattattaaaagtataatgatagtttatatttatatttcctcatcaactctattcctgaatgctacaactagttta 29775847  T
Q  116 catgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatggtggtgat 215  Q
    |  |||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||||  | |||||| | |||||||||    
T  29775846 cccgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggtaacaattcaaaaacgagagagattcaatcagaacaaatctacggtggtgat 29775747  T
Q  216 gaagc 220  Q
     ||||    
T  29775746 aaagc 29775742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 168 - 260
Target Start/End: Original strand, 44271546 - 44271638
Alignment:
Q  168 aattcgaatacgagagagattcaatcgaagcaaatccatggtggtgatgaagcagtggcagaaagcttcaagattttggaacaaagggttttg 260  Q
    |||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  44271546 aattcgaacacgagagagattcaatcggagcaaatccatggcggtgatgaagcagtagcagaaagcttcaagattttggaacaaagggttttg 44271638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 236
Target Start/End: Original strand, 31761430 - 31761464
Alignment:
Q  202 tccatggtggtgatgaagcagtggcagaaagcttc 236  Q
    |||||||||||||||||||||||||||||||||||    
T  31761430 tccatggtggtgatgaagcagtggcagaaagcttc 31761464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 16 - 260
Target Start/End: Original strand, 24279026 - 24279270
Alignment:
Q  16 atcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaactagttta 115  Q
    |||||||||| ||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||  |||||| |||||||||||||    
T  24279026 atcagaacaatcacatactgtttacattattaaaagtataatgatagtttatatttatatttcctcatcaactctgttcctgaatgatacaactagttta 24279125  T
Q  116 catgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatggtggtgat 215  Q
    | ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  24279126 cctgtgtttgaaaaattagaatgtcactttacttccttgtgtttctggttacaattcgaatacgagagggattcaatcggagcaaatccatggtggtgat 24279225  T
Q  216 gaagcagtggcagaaagcttcaagattttggaacaaagggttttg 260  Q
    ||| |||||||||||||||||||||||||||||||||||||||||    
T  24279226 gaaccagtggcagaaagcttcaagattttggaacaaagggttttg 24279270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 16 - 260
Target Start/End: Original strand, 42437430 - 42437675
Alignment:
Q  16 atcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaactagttta 115  Q
    ||||||||||  |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||  ||||||||||||||||||||    
T  42437430 atcagaacaatgacatactgtttacattattaaaagtataatgatagtttctatttatatttcctcatcaactatgttcctgaatgctacaactagttta 42437529  T
Q  116 catgtgtttgaaaaattagaa-tgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatggtggtga 214  Q
    | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||    
T  42437530 cctgtgtttgaaaaattagaaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagaggttcaatcggtgcaaatccatggtggtga 42437629  T
Q  215 tgaagcagtggcagaaagcttcaagattttggaacaaagggttttg 260  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||    
T  42437630 tgaagcactggcagaaagcttcaagattttggaacaaaggattttg 42437675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 30504291 - 30504087
Alignment:
Q  16 atcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaactagttta 115  Q
    |||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  30504291 atcagaacaatcacatactgtttacattattaaaagtataatgatagtttctatttatatttcctcatcaactctgttcctgaatgctacaactagttta 30504192  T
Q  116 catgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatggtggtgat 215  Q
    |   ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  30504191 ctattgtttgaaaaattagaatgccactttacttccttgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatggtggtgat 30504092  T
Q  216 gaagc 220  Q
     ||||    
T  30504091 aaagc 30504087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0854 (Bit Score: 128; Significance: 4e-66; HSPs: 1)
Name: scaffold0854
Description:

Target: scaffold0854; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 16 - 260
Target Start/End: Original strand, 2798 - 3022
Alignment:
Q  16 atcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaactagttta 115  Q
    |||||||||| |||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||  |||||||| |||            
T  2798 atcagaacaatcacatattgtttacattattaaaagtataatgatagtttctatttatatttcctcatcaactctgttcctgaatgctgcaa-------- 2889  T
Q  116 catgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatggtggtgat 215  Q
                ||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  2890 ------------aaattagaatgtcactttacttcctcgtctttctagttacaattcgaatacgagagagattcaatcggagcaaatccatggtggtgat 2977  T
Q  216 gaagcagtggcagaaagcttcaagattttggaacaaagggttttg 260  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||    
T  2978 gaagcagtggcagaaaacttcaagtttttggaacaaagggttttg 3022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 96 - 213
Target Start/End: Complemental strand, 20596 - 20478
Alignment:
Q  96 tgaatgctacaactagtttacatgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaa-tcg 194  Q
    |||||||||||| |||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| | |    
T  20596 tgaatgctacaattagtttacctctgtttgaaaaattagaatgccactttacttccttgtgtttctggttacaattcaaatacgagagagattcaagtgg 20497  T
Q  195 aagcaaatccatggtggtg 213  Q
    | || ||||||||||||||    
T  20496 acgcgaatccatggtggtg 20478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 200903 - 200967
Alignment:
Q  13 aatatcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatattt 77  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||| |||||    
T  200903 aatatcagaacaatcacatactatttacattattaaaagtatagtgatagtttctatttctattt 200967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University