View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13090_low_15 (Length: 349)
Name: NF13090_low_15
Description: NF13090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13090_low_15 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 13 - 349
Target Start/End: Original strand, 1945913 - 1946249
Alignment:
| Q |
13 |
ttctgacaaagttgtataatctcctcttctgtagcattgtacccttccttcagtttcacaaatgcacaaggtgtctctccccaatattcatctggtcttc |
112 |
Q |
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| T |
1945913 |
ttctgacaaagttgtataatctcctcttctgtagcattgtacccttccttcagtttcacaaatgcacaaggtgtctctccccaatattcatctggtcttc |
1946012 |
T |
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| Q |
113 |
caaccacagcagcctcaaaaactgctggatgactaaaaatcacaccttccaactgaattgtgctaatgttttcacccccggatatgacaacatcctttgc |
212 |
Q |
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| T |
1946013 |
caaccacagcagcctcaaaaactgctggatgactaaaaatcacaccttccaactgaattgtgctaatgttttcacccccggatatgacaacatccgttgc |
1946112 |
T |
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| Q |
213 |
tctatccgtaacttctatgtaaccatcagtatgctttactcccatgtcacctgtcctaaaccatccaccttcaaatgcatcctgtgttgctttcaaatcc |
312 |
Q |
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| T |
1946113 |
tctatccgtaacttctatgtaaccatcagtatgctttactcccatgtcacctgtcctgaaccatccaccttcaaatgcatcctgtgttgctttcaaatcc |
1946212 |
T |
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| Q |
313 |
ttgagatatccattcatcacattgtttcccctaaaca |
349 |
Q |
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| T |
1946213 |
ttgagatatccattcatcacattgtttcccctaaaca |
1946249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 24 - 349
Target Start/End: Original strand, 1927806 - 1928131
Alignment:
| Q |
24 |
ttgtataatctcctcttctgtagcattgtacccttccttcagtttcacaaatgcacaaggtgtctctccccaatattcatctggtcttccaaccacagca |
123 |
Q |
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| T |
1927806 |
ttgtattatctcttcttccgtagcattgtgcccttccttcaacttcacaaacgcacaaggtgtctctccccaatactcatcaggtctcccaacaacagct |
1927905 |
T |
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| Q |
124 |
gcctcaaaaactgctggatgactaaaaatcacaccttccaactgaattgtgctaatgttttcacccccggatatgacaacatcctttgctctatccgtaa |
223 |
Q |
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| T |
1927906 |
gcctcaacaactgctggatgactataaataacaccttccaactcaattgtgctaatgttttctcccccggatatgataatatccttcgaccgatccttaa |
1928005 |
T |
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| Q |
224 |
cttctatgtaaccatcagtatgctttactcccatgtcacctgtcctaaaccatccaccttcaaatgcatcctgtgttgctttcaaatccttgagatatcc |
323 |
Q |
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| T |
1928006 |
gttctatgtaaccgtcagaatgctttactcccaagtcaccagtcctaaaccatccacctttaaacgactcttgtgttgcttttaaatcctttagatatcc |
1928105 |
T |
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| Q |
324 |
attcatcacattgtttcccctaaaca |
349 |
Q |
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| T |
1928106 |
attcatcacagtgtttcccctaaaca |
1928131 |
T |
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