View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13090_low_16 (Length: 346)

Name: NF13090_low_16
Description: NF13090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13090_low_16
NF13090_low_16
[»] chr8 (5 HSPs)
chr8 (174-338)||(32849229-32849393)
chr8 (18-97)||(32849471-32849550)
chr8 (175-338)||(17478275-17478437)
chr8 (174-340)||(4441971-4442136)
chr8 (174-285)||(4427327-4427437)
[»] chr4 (2 HSPs)
chr4 (209-335)||(8382615-8382741)
chr4 (209-335)||(8366612-8366738)
[»] chr5 (1 HSPs)
chr5 (174-295)||(8341327-8341447)


Alignment Details
Target: chr8 (Bit Score: 157; Significance: 2e-83; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 174 - 338
Target Start/End: Complemental strand, 32849393 - 32849229
Alignment:
Q  174 gttttgtactaattactacttgatgttctagtacaaacagtggctgcttgctgaaccccatgatctacattttcaagaatttcgcaatttggttcgccta 273  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32849393 gttttgtactaattactacttgatgttctagtacaaacagtggctgcttgctgaaccccatgatctacattttcaagaatttcgcaatttggttcgccta 32849294  T
Q  274 gagctcattcttccctggtttagattcaattctttgctcaacttgcttcaagaatgtcctatgct 338  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  32849293 gagctcattcttccctggtttagattcaattatctgctcaacttgcttcaagaatgtcctatgct 32849229  T

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Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 32849550 - 32849471
Alignment:
Q  18 tggacaaactctgcatcccaccttccttgaaaaggttgacaatctccattaagaagttgggtcgtacttcaacaaaggtt 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32849550 tggacaaactctgcatcccaccttccttgaaaaggttgacaatctccattaagaagttgggtcgtacttcaacaaaggtt 32849471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 175 - 338
Target Start/End: Original strand, 17478275 - 17478437
Alignment:
Q  175 ttttgtactaattactacttgatgttctagtacaaacagtggctgcttgctgaaccccatgatctacattttcaagaatttcgcaatttggttcgcctag 274  Q
    |||||||||||||| || ||| ||| || |||||||||||||||||||| |||||||||  |||||| |||||||||||||| | ||||| | || ||||    
T  17478275 ttttgtactaattagtagttggtgt-cttgtacaaacagtggctgcttggtgaaccccacaatctactttttcaagaatttcactatttgatacgtctag 17478373  T
Q  275 agctcattcttccctggtttagattcaattctttgctcaacttgcttcaagaatgtcctatgct 338  Q
    |||||||||||| ||||||||  | ||||||| |||||| |||||||||  ||||||| |||||    
T  17478374 agctcattcttctctggtttaactccaattctctgctcagcttgcttcagaaatgtccgatgct 17478437  T

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Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 174 - 340
Target Start/End: Original strand, 4441971 - 4442136
Alignment:
Q  174 gttttgtactaattactacttgatgttctagtacaaacagtggctgcttgctgaaccccatgatctacattttcaagaatttcgcaatttggttcgccta 273  Q
    |||||||||||||| |||||||||  | | | || ||||||||||||||| |||||| | |||||||  |||||||||||||||| ||||| |||   ||    
T  4441971 gttttgtactaattgctacttgataatgtgg-acgaacagtggctgcttggtgaacctcgtgatctattttttcaagaatttcgctatttgcttcattta 4442069  T
Q  274 gagctcattcttccctggtttagattcaattctttgctcaacttgcttcaagaatgtcctatgctac 340  Q
    ||||||||||||||||||||||  | ||||| | ||||   |||||||||| |||||||| ||||||    
T  4442070 gagctcattcttccctggtttaactccaattatctgctttccttgcttcaaaaatgtcctgtgctac 4442136  T

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Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 174 - 285
Target Start/End: Complemental strand, 4427437 - 4427327
Alignment:
Q  174 gttttgtactaattactacttgatgttctagtacaaacagtggctgcttgctgaaccccatgatctacattttcaagaatttcgcaatttggttcgccta 273  Q
    |||||||||||||||||| |||||||  | || |||| ||||||||||||  || |||||||||||| ||||||||||| || || ||||| ||||||||    
T  4427437 gttttgtactaattactatttgatgtcat-gttcaaatagtggctgcttggagagccccatgatctaaattttcaagaactttgctatttgtttcgccta 4427339  T
Q  274 gagctcattctt 285  Q
    || |||| ||||    
T  4427338 gaactcactctt 4427327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 209 - 335
Target Start/End: Complemental strand, 8382741 - 8382615
Alignment:
Q  209 aacagtggctgcttgctgaaccccatgatctacattttcaagaatttcgcaatttggttcgcctagagctcattcttccctggtttagattcaattcttt 308  Q
    ||||||||||||||| |||||||| |||||||| ||||||||||||| |||||||| |||   |||| |||| ||||||||||||||| | ||||||| |    
T  8382741 aacagtggctgcttggtgaaccccgtgatctactttttcaagaattttgcaatttgcttcatttagatctcactcttccctggtttagctccaattctct 8382642  T
Q  309 gctcaacttgcttcaagaatgtcctat 335  Q
     |||| |||||||||  ||||||||||    
T  8382641 cctcagcttgcttcacaaatgtcctat 8382615  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 209 - 335
Target Start/End: Complemental strand, 8366738 - 8366612
Alignment:
Q  209 aacagtggctgcttgctgaaccccatgatctacattttcaagaatttcgcaatttggttcgcctagagctcattcttccctggtttagattcaattcttt 308  Q
    ||||||||||||||| |||||||| |||||||| ||||||||| ||| || || || |||   ||||  |||||||||||||||||   | ||||||| |    
T  8366738 aacagtggctgcttggtgaaccccgtgatctactttttcaagatttttgctatctgcttcatttagatatcattcttccctggtttgactccaattctct 8366639  T
Q  309 gctcaacttgcttcaagaatgtcctat 335  Q
     |||| |||||||||  ||||||||||    
T  8366638 tctcagcttgcttcacaaatgtcctat 8366612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 174 - 295
Target Start/End: Original strand, 8341327 - 8341447
Alignment:
Q  174 gttttgtactaattactacttgatgttctagtacaaacagtggctgcttgctgaaccccatgatctacattttcaagaatttcgcaatttggttcgccta 273  Q
    |||||||||||||||||||||||| |  | |||||||||||||||||| | ||||||||||||  | | ||||||||||||||   ||||| |||||||     
T  8341327 gttttgtactaattactacttgatatcgt-gtacaaacagtggctgctaggtgaaccccatgagatgctttttcaagaatttcaatatttgattcgcctt 8341425  T
Q  274 gagctcattcttccctggttta 295  Q
    |||||| ||||| |||||||||    
T  8341426 gagctcgttctttcctggttta 8341447  T

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