View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13090_low_21 (Length: 292)

Name: NF13090_low_21

Description: NF13090

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF13090_low_21

[»] chr8 (5 HSPs)

Alignment Details

Target: chr8 (Bit Score: 268; Significance: 1e-150; HSPs: 5)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 268; E-Value: 1e-150

Query Start/End: Original strand, 17 - 292

Target Start/End: Original strand, 2048879 - 2049154

Alignment:

Q	17	tttaaatatttaagtgaaaaataattattgttatttttaaatgaaaaatcattgttatgattgcactaaatggaaaccattaacataactctgtttataa	116	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	2048879	tttaaatatttaagtgaaaaataattattgttatttttaaatgaaaaatcattcttatgattgcactaaatggaaaccattaacataactctgtttataa	2048978	T

Q	117	aaattaaataagcttgattatgtttatcaatgagttttttctcccacacagatattcatatttattatgctttatattcataaggaaattttaactctaa	216	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	2048979	aaattaaataagcttgattatgtttattaatgagttttttctcccacacagatattcatatttattatgctttatattcataaggaaattttaactctaa	2049078	T

Q	217	aatctacagccacaataatgaagataaggataatgtgaagttatttaaatagtgatatttatttctcttacatcaa	292	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	2049079	aatctacagccacaataatgaagataaggataatgtgaagttatttaaatagtgatatttatttctcttacatcaa	2049154	T

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Target: chr8; HSP #2

Raw Score: 66; E-Value: 3e-29

Query Start/End: Original strand, 145 - 258

Target Start/End: Original strand, 2045261 - 2045374

Alignment:

Q	145	aatgagttttttctcccacacagatattcatatttattatgctttatattcataaggaaattttaactctaaaatctacagccacaataatgaagataag	244	Q
		\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \| \|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|
T	2045261	aatgagttttttgtcccacatatatattcatatttattatgctttgtattcatcaagagattttaactcaaaaatcaacggccacaataataaagataag	2045360	T

Q	245	gataatgtgaagtt	258	Q
		\|\| \|\|\|\|\|\|\|\|\|\|\|
T	2045361	gaaaatgtgaagtt	2045374	T

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Target: chr8; HSP #3

Raw Score: 66; E-Value: 3e-29

Query Start/End: Original strand, 207 - 292

Target Start/End: Original strand, 2053538 - 2053623

Alignment:

Q	207	ttaactctaaaatctacagccacaataatgaagataaggataatgtgaagttatttaaatagtgatatttatttctcttacatcaa	292	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	2053538	ttaactctaaaatctacagccacaattatgaacataaggaaaatgtgaagttctataaatagtgatatttatttctcttacatcaa	2053623	T

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Target: chr8; HSP #4

Raw Score: 56; E-Value: 3e-23

Query Start/End: Original strand, 171 - 258

Target Start/End: Original strand, 2036301 - 2036388

Alignment:

Q	171	ttcatatttattatgctttatattcataaggaaattttaactctaaaatctacagccacaataatgaagataaggataatgtgaagtt	258	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|
T	2036301	ttcatatttattatgctttgtattcataaagagattttaagtcaaaaatctacagcaacaatattgaagataaggaaaatgtgaagtt	2036388	T

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Target: chr8; HSP #5

Raw Score: 38; E-Value: 0.000000000002

Query Start/End: Original strand, 90 - 135

Target Start/End: Original strand, 2056491 - 2056536

Alignment:

Q	90	aaaccattaacataactctgtttataaaaattaaataagcttgatt	135	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	2056491	aaaccattaacataaatctgtttataaaatttaaataagcttgatt	2056536	T

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