View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13090_low_25 (Length: 257)
Name: NF13090_low_25
Description: NF13090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13090_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 44236040 - 44235799
Alignment:
| Q |
1 |
ctgaggagctttccgtaccatttgacaagacgaagagccatccagctgctttgaccaccaaagagtatggtctcaacaaaacggagcttttaaaggctaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
44236040 |
ctgaggagctttccgtaccatttgacaagacgaagagccatccagctgctttgaccaccaaagagtatggtctcaacaagacggagcttttaaaggctaa |
44235941 |
T |
|
| Q |
101 |
cttctcaagggagtatttgctcatgaaaagaaattcctttgtttacatcttcaagctaactcaggtttggaatctatcccgctctttttataaatataag |
200 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44235940 |
cttctcaagagagtatttgctcatgaaaagaaattcctttgtttacatcttcaagctaactcaggtttggaatctatcccgctctttttataaatataag |
44235841 |
T |
|
| Q |
201 |
caagtagatattctttttcatttatacattcatcaccatgat |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
44235840 |
caagtagatattctttttcatttatacattcatcaccatgat |
44235799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 44213065 - 44212823
Alignment:
| Q |
1 |
ctgaggagctttccgtaccatttgacaagacgaagagccatccagctgctttgaccaccaaagagtatggtctcaacaaaacggagcttttaaaggctaa |
100 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
44213065 |
ctgaggagctttccataccatttgacaagacgaagagccatccagctgctttgaccaccaaagagtatggtctcaacaagacggagcttttaaaggctaa |
44212966 |
T |
|
| Q |
101 |
cttctcaagggagtatttgctcatgaaaagaaattcctttgtttacatcttcaagctaactcaggtttggaatctatcccgctct-ttttataaatataa |
199 |
Q |
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||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
44212965 |
cttctcaagagagtatttgctcatgaaaaggaattcgtttgtttacatcttcaagctaactcaggtttgtaatctatcccgctcttttttataaatataa |
44212866 |
T |
|
| Q |
200 |
gcaagtagatattctttttcatttatacattcatcaccatgat |
242 |
Q |
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| || ||||| |||||||||||||||||||||| |||||||| |
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| T |
44212865 |
gtaaatagattatctttttcatttatacattcatgaccatgat |
44212823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 44225226 - 44224989
Alignment:
| Q |
1 |
ctgaggagctttccgtaccatttgacaagacgaagagccatccagctgctttgaccaccaaagagtatggtctcaacaaaacggagcttttaaaggctaa |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
44225226 |
ctgaggagctttccgtaccatttgacaagacgaagagccatccagctgctttgaccaccaaagagtatggtctcaacaagacggagcttttaaaggctaa |
44225127 |
T |
|
| Q |
101 |
cttctcaagggagtatttgctcatgaaaagaaattcctttgtttacatcttcaagctaactcaggtttggaatctatcccgctctttttataaatataag |
200 |
Q |
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||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
44225126 |
cttctcaagagagtatttgctcatgaaaaggaattcgtttgtttacatcttcaagctaactcaggtttggaatctatcccgctctttt-----atataag |
44225032 |
T |
|
| Q |
201 |
-caagtagatattctttttcatttatacattcatcaccatgat |
242 |
Q |
| |
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|| |||| |||||||||||||||||||||||| |||||||| |
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| T |
44225031 |
tgaaatagaaattctttttcatttatacattcatgaccatgat |
44224989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 90 - 155
Target Start/End: Original strand, 2884793 - 2884858
Alignment:
| Q |
90 |
ttaaaggctaacttctcaagggagtatttgctcatgaaaagaaattcctttgtttacatcttcaag |
155 |
Q |
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|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2884793 |
ttaaaggctaacttctcaagagagtatttgcttatgaaaagaaattcctttgtttacatcttcaag |
2884858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 90 - 155
Target Start/End: Complemental strand, 2899767 - 2899702
Alignment:
| Q |
90 |
ttaaaggctaacttctcaagggagtatttgctcatgaaaagaaattcctttgtttacatcttcaag |
155 |
Q |
| |
|
|||||||||||||||||||| || |||||||| |||||||| |||||||||||||||||||||||| |
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| T |
2899767 |
ttaaaggctaacttctcaagagaatatttgcttatgaaaaggaattcctttgtttacatcttcaag |
2899702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 2874853 - 2874971
Alignment:
| Q |
18 |
ccatttgacaagacgaagagccatccagctgctttgaccaccaaagagtatggtctcaacaaaacggagcttttaaaggctaacttctcaagggagtatt |
117 |
Q |
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|||||||||||| | || | |||||||| || || || || ||| |||||||| | ||||| | ||| || |||||||||||| ||||||| |||| || |
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| T |
2874853 |
ccatttgacaagtcaaataatcatccagcagcattaacaactaaaaagtatggtgttaacaagaaggaactattaaaggctaacatctcaagagagtttt |
2874952 |
T |
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| Q |
118 |
tgctcatgaaaagaaattc |
136 |
Q |
| |
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|||| |||||||||||||| |
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| T |
2874953 |
tgcttatgaaaagaaattc |
2874971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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