View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13090_low_30 (Length: 243)
Name: NF13090_low_30
Description: NF13090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13090_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 44236125 - 44236350
Alignment:
| Q |
1 |
cccagtactgtgcttgatcctttctggaagttacttcttgaagaaagtcagcggcacctttcctttcaggacatttgaaacccattgtttcaaaaaagtc |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44236125 |
cccagtactgtgcttgatcctttttggaagttacttcttgaagaaagtcagcggcacctttcctttcaggacatttgaaacccattgtttcaaaaaagtc |
44236224 |
T |
|
| Q |
101 |
aagaacatattcgcgggggccatggtatacaacttggccatcagagattaagataatgtcatcaaaaagatcataagtctcaggtgctggttggagcagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44236225 |
aagaacatattcgcgggggccatggtatacaacttggccatcagagattaagataatgtcatcaaaaagatcataagtctcaggtgctggttggagcagt |
44236324 |
T |
|
| Q |
201 |
gatataactgcagtgccattcataat |
226 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
44236325 |
gatataactgcagtgccattcataat |
44236350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 44225311 - 44225536
Alignment:
| Q |
1 |
cccagtactgtgcttgatcctttctggaagttacttcttgaagaaagtcagcggcacctttcctttcaggacatttgaaacccattgtttcaaaaaagtc |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44225311 |
cccagtactgtgcttgatcctttttggaagttacttcttgaagaaagtcagcagcacctttcctttcaggacatttgaaacccattgtttcaaaaaagtc |
44225410 |
T |
|
| Q |
101 |
aagaacatattcgcgggggccatggtatacaacttggccatcagagattaagataatgtcatcaaaaagatcataagtctcaggtgctggttggagcagt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44225411 |
aagaacatattcgcgggggccatggtatacaacttggccatcagaaattaagataatgtcatcaaaaagatcataagtctcaggtgctggttggagcagt |
44225510 |
T |
|
| Q |
201 |
gatataactgcagtgccattcataat |
226 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
44225511 |
gatataactgcagtgccattcataat |
44225536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 44213150 - 44213375
Alignment:
| Q |
1 |
cccagtactgtgcttgatcctttctggaagttacttcttgaagaaagtcagcggcacctttcctttcaggacatttgaaacccattgtttcaaaaaagtc |
100 |
Q |
| |
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||||||||||||||||||||||| |||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| | ||| |||||||| |
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| T |
44213150 |
cccagtactgtgcttgatcctttttggatgttacttcttgaagaaaatcagcaacacctttcctttcaggacatttgaaacccatagattcgaaaaagtc |
44213249 |
T |
|
| Q |
101 |
aagaacatattcgcgggggccatggtatacaacttggccatcagagattaagataatgtcatcaaaaagatcataagtctcaggtgctggttggagcagt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
44213250 |
aagaacatattcgcgggggccatggtatacaacttggccatcagatattaagataatgtcatcaaaaagatcataagtctcaggtgctggctggagcagt |
44213349 |
T |
|
| Q |
201 |
gatataactgcagtgccattcataat |
226 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
44213350 |
gatataactgcagtgccattcataat |
44213375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 31 - 196
Target Start/End: Complemental strand, 2884481 - 2884316
Alignment:
| Q |
31 |
ttacttcttgaagaaagtcagcggcacctttcctttcaggacatttgaaacccattgtttcaaaaaagtcaagaacatattcgcgggggccatggtatac |
130 |
Q |
| |
|
||||||||||||||||||| || ||||||||||| ||||||||||||||||| | || ||||||||| ||||||| || |||||| || || ||||| || |
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| T |
2884481 |
ttacttcttgaagaaagtccgctgcacctttcctctcaggacatttgaaaccaactgattcaaaaaattcaagaatatgttcgcgaggtccttggtagac |
2884382 |
T |
|
| Q |
131 |
aacttggccatcagagattaagataatgtcatcaaaaagatcataagtctcaggtgctggttggag |
196 |
Q |
| |
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|| ||| |||||||| || | ||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2884381 |
aatttgaccatcagatataagaataatgtcatcaaaaagttcataagtctcaggtgctggttggag |
2884316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 31 - 220
Target Start/End: Original strand, 2900483 - 2900672
Alignment:
| Q |
31 |
ttacttcttgaagaaagtcagcggcacctttcctttcaggacatttgaaacccattgtttcaaaaaagtcaagaacatattcgcgggggccatggtatac |
130 |
Q |
| |
|
|||||||||||||||||||||| | |||||||| ||||||||||||||||| | || |||||||||||||||||||| ||| || || || || || || |
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| T |
2900483 |
ttacttcttgaagaaagtcagctacccctttcctctcaggacatttgaaaccaactgattcaaaaaagtcaagaacatgttcacgcggtccttgatagac |
2900582 |
T |
|
| Q |
131 |
aacttggccatcagagattaagataatgtcatcaaaaagatcataagtctcaggtgctggttggagcagtgatataactgcagtgccatt |
220 |
Q |
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|| ||| ||||| || || | ||||||||||||||||| ||||||||||| ||||||||||| |||| || ||||||||||| ||||| |
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| T |
2900583 |
aatttgaccatcggatataagaataatgtcatcaaaaagttcataagtctctggtgctggttgaagcaaagagataactgcagttccatt |
2900672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 31 - 219
Target Start/End: Complemental strand, 2874487 - 2874299
Alignment:
| Q |
31 |
ttacttcttgaagaaagtcagcggcacctttcctttcaggacatttgaaacccattgtttcaaaaaagtcaagaacatattcgcgggggccatggtatac |
130 |
Q |
| |
|
||||||||||||| || ||||| | |||||||| ||||||||||||||||| || | ||||||||| |||||||||| ||| || || || ||||| || |
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| T |
2874487 |
ttacttcttgaaggaaatcagcaacgcctttcctctcaggacatttgaaaccaatagattcaaaaaattcaagaacattttcacgaggtccttggtaaac |
2874388 |
T |
|
| Q |
131 |
aacttggccatcagagattaagataatgtcatcaaaaagatcataagtctcaggtgctggttggagcagtgatataactgcagtgccat |
219 |
Q |
| |
|
|| || |||||||| | | ||||||||||||||||| ||||||||||| |||||||| || |||| ||| |||| |||||| |||| |
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| T |
2874387 |
aatttcaccatcagataaaagaataatgtcatcaaaaagttcataagtctctggtgctggctgaagcaatgagataagtgcagttccat |
2874299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 193
Target Start/End: Original strand, 42135518 - 42135686
Alignment:
| Q |
25 |
tggaagttacttcttgaagaaagtcagcggcacctttcctttcaggacatttgaaacccattgtttcaaaaaagtcaagaacatattcgcgggggccatg |
124 |
Q |
| |
|
|||| ||||||||||| | ||| ||||| | ||||| ||| ||||||||||||||| || ||||||||||| | | |||| |||||| || || || |
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| T |
42135518 |
tggatgttacttcttgtaaaaaatcagctactccttttcttggaggacatttgaaaccgatggtttcaaaaaactgtaacacattttcgcgtggtccttg |
42135617 |
T |
|
| Q |
125 |
gtatacaacttggccatcagagattaagataatgtcatcaaaaagatcataagtctcaggtgctggttg |
193 |
Q |
| |
|
|||||||| ||| || || || | || ||||||||||||||| || ||| | ||||| ||||||||||| |
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|
| T |
42135618 |
gtatacaatttgaccttctgaaagtaggataatgtcatcaaagagttcaaatgtctctggtgctggttg |
42135686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 186
Target Start/End: Original strand, 39550630 - 39550759
Alignment:
| Q |
57 |
cctttcctttcaggacatttgaaacccattgtttcaaaaaagtcaagaacatattcgcgggggccatggtatacaacttggccatcagagattaagataa |
156 |
Q |
| |
|
|||||||| ||||||||||| ||||| |||| ||| ||||| ||||| || | || ||||| || ||||||| || || | |||||||| || |||| |
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| T |
39550630 |
cctttcctatcaggacatttaaaaccaattgattcgaaaaattcaagcacgtgctcacggggaccttggtatataatgtgactatcagagagtagaataa |
39550729 |
T |
|
| Q |
157 |
tgtcatcaaaaagatcataagtctcaggtg |
186 |
Q |
| |
|
|||| |||||||||| |||||||| |||| |
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| T |
39550730 |
tgtcgtcaaaaagattgtaagtctctggtg |
39550759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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