View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13090_low_4 (Length: 628)

Name: NF13090_low_4
Description: NF13090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13090_low_4
NF13090_low_4
[»] chr3 (1 HSPs)
chr3 (1-612)||(49972169-49972771)
[»] chr4 (5 HSPs)
chr4 (507-608)||(38020379-38020479)
chr4 (507-595)||(2097090-2097177)
chr4 (507-543)||(20228274-20228311)
chr4 (564-612)||(3678320-3678368)
chr4 (552-604)||(33021190-33021241)
[»] chr1 (3 HSPs)
chr1 (507-608)||(10799205-10799305)
chr1 (552-597)||(15682171-15682216)
chr1 (552-607)||(45443436-45443492)
[»] chr2 (2 HSPs)
chr2 (553-612)||(41508141-41508200)
chr2 (568-612)||(25726935-25726979)
[»] chr8 (3 HSPs)
chr8 (552-607)||(26055500-26055555)
chr8 (507-543)||(40354750-40354787)
chr8 (552-612)||(16622594-16622653)
[»] chr7 (3 HSPs)
chr7 (552-607)||(35451133-35451188)
chr7 (554-612)||(37829974-37830032)
chr7 (571-607)||(7913834-7913870)
[»] chr6 (2 HSPs)
chr6 (564-607)||(3004848-3004891)
chr6 (507-543)||(21537473-21537510)


Alignment Details
Target: chr3 (Bit Score: 526; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 1 - 612
Target Start/End: Original strand, 49972169 - 49972771
Alignment:
Q  1 tccctaacttgtcttgcaagtacgtataattgttattctagagcataaatacctacttaggcccctctctatcaataaccgcatatacaaattcttaaac 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49972169 tccctaacttgtcttgcatgtacgtataattgttattctagagcataaatacctacttaggcccctctctatcaataaccgcatatacaaattcttaaac 49972268  T
Q  101 atatcctatacaggaacagccacacttcattgtccgctaactataacatgattataggatgagatgttgcatacaaacaatcttaagattcaggatgaag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  49972269 atatcctatacaggaacagccacacttcattgtccgctaactacaacatgattataggatgagatgttgcatacaaacaatcttaagattcaggatgaaa 49972368  T
Q  201 caaaaatcccaccatgtagtttgcatggcaaaaataacgagcatttgtaaactatatatccaaattcttcaactgagcattttacttttgcatttcatcc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||    
T  49972369 caaaaatcccaccatgtagtttgcatggcaaaaataacgagcatttgtaaac----tatccaaattcttcaactgagcattttacttttgcatttcatcc 49972464  T
Q  301 attgcaactagctctgtcactacaacagannnnnnnattagctggaaattgcaacagattttgcaaaatggccttcttattaagctcattaagttttgct 400  Q
    |||||||||||||||||||||||||||||       |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  49972465 attgcaactagctctgtcactacaacagatttttttattagctggaaattgcaacaaattttgcaaaatggccttcttattaagctcattaagttttgct 49972564  T
Q  401 aatttaacttcatctaatctaccattctgaagttaagaattgtcccgttctacataaagcttggttccaattactaatcaatataatatgtcaacgattt 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||    
T  49972565 aatttaacttcatctaatctaccattctgaagttaagaattgtcccgttctacataaagcttggttccaattactaatc-----aatatgtcaacgattt 49972659  T
Q  501 taattcagctcaactagtttgagctaaggttaaggagttggagttactatcggttcaaactcggatgaatgagtaaagattaatataacaactaattact 600  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  49972660 taattcagctcaactagtttgagctaaggttaaggagttggagttactactggttcaaactcggataaatgagtaaagattaatataacaactaattact 49972759  T
Q  601 aacatttttcat 612  Q
    ||||||||||||    
T  49972760 aacatttttcat 49972771  T

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Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 507 - 608
Target Start/End: Original strand, 38020379 - 38020479
Alignment:
Q  507 agctcaactagtttgagctaagg-ttaaggagttggagttactatcggttcaaactcggatgaatgagtaaagattaatataacaactaattactaacat 605  Q
    ||||||||| ||||||||||||| |||||||||||||| | | |  ||||||||| |||| ||| ||||||| |||||| |||||||| |||||||||||    
T  38020379 agctcaactggtttgagctaagggttaaggagttggaggtccaa--ggttcaaacccggacgaaggagtaaatattaatctaacaactgattactaacat 38020476  T
Q  606 ttt 608  Q
    |||    
T  38020477 ttt 38020479  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 507 - 595
Target Start/End: Original strand, 2097090 - 2097177
Alignment:
Q  507 agctcaactagtttgagctaa-ggttaaggagttggagttactatcggttcaaactcggatgaatgagtaaagattaatataacaactaa 595  Q
    ||||||||||||||||||||| |||||||||||||||| | |  | ||||||||| ||||  |  ||||||| |||||| ||||||||||    
T  2097090 agctcaactagtttgagctaagggttaaggagttggaggtcc--tgggttcaaacccggacaagggagtaaatattaatctaacaactaa 2097177  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 543
Target Start/End: Original strand, 20228274 - 20228311
Alignment:
Q  507 agctcaactagtttgagctaa-ggttaaggagttggag 543  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  20228274 agctcaactagtttgagctaagggttaaggagttggag 20228311  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 564 - 612
Target Start/End: Complemental strand, 3678368 - 3678320
Alignment:
Q  564 gatgaatgagtaaagattaatataacaactaattactaacatttttcat 612  Q
    ||||||| |||||| |||||| |||||||||||| ||||||||| ||||    
T  3678368 gatgaataagtaaatattaatttaacaactaattgctaacatttatcat 3678320  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 552 - 604
Target Start/End: Original strand, 33021190 - 33021241
Alignment:
Q  552 ggttcaaactcggatgaatgagtaaagattaatataacaactaattactaaca 604  Q
    |||| |||||||||||||| | |||| |||||| |||||||||||||||||||    
T  33021190 ggtttaaactcggatgaat-attaaatattaatctaacaactaattactaaca 33021241  T

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Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 507 - 608
Target Start/End: Original strand, 10799205 - 10799305
Alignment:
Q  507 agctcaactagtttgagctaaggt-taaggagttggagttactatcggttcaaactcggatgaatgagtaaagattaatataacaactaattactaacat 605  Q
    |||||||||||||||||||||||  |||| ||||| |||| ||   |||||||||  ||||||| ||||||| |||||| ||||||||||||||||||||    
T  10799205 agctcaactagtttgagctaagggataagtagttgaagttcctg--ggttcaaaccaggatgaaggagtaaatattaatctaacaactaattactaacat 10799302  T
Q  606 ttt 608  Q
    |||    
T  10799303 ttt 10799305  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 552 - 597
Target Start/End: Complemental strand, 15682216 - 15682171
Alignment:
Q  552 ggttcaaactcggatgaatgagtaaagattaatataacaactaatt 597  Q
    ||||||||| |||||||| ||||||| |||||| ||||||||||||    
T  15682216 ggttcaaacccggatgaaggagtaaatattaatctaacaactaatt 15682171  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 552 - 607
Target Start/End: Complemental strand, 45443492 - 45443436
Alignment:
Q  552 ggttcaaactcggatgaatgagtaaagattaatataacaa-ctaattactaacattt 607  Q
    ||||||||| |||| ||| ||||||| |||||| |||||| ||||||||||||||||    
T  45443492 ggttcaaacccggacgaaggagtaaatattaatctaacaaactaattactaacattt 45443436  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 553 - 612
Target Start/End: Complemental strand, 41508200 - 41508141
Alignment:
Q  553 gttcaaactcggatgaatgagtaaagattaatataacaactaattactaacatttttcat 612  Q
    |||||||| |||| ||| ||||||| ||||||||||||||||||| ||||||||| ||||    
T  41508200 gttcaaacccggacgaaggagtaaatattaatataacaactaattgctaacatttgtcat 41508141  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 568 - 612
Target Start/End: Complemental strand, 25726979 - 25726935
Alignment:
Q  568 aatgagtaaagattaatataacaactaattactaacatttttcat 612  Q
    |||||||||| |||||| |||||| ||| ||||||||||||||||    
T  25726979 aatgagtaaatattaatctaacaattaactactaacatttttcat 25726935  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 552 - 607
Target Start/End: Original strand, 26055500 - 26055555
Alignment:
Q  552 ggttcaaactcggatgaatgagtaaagattaatataacaactaattactaacattt 607  Q
    |||||||||| | ||||| ||||||| |||||| ||| ||||||||||||||||||    
T  26055500 ggttcaaacttgaatgaaagagtaaatattaatctaataactaattactaacattt 26055555  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 543
Target Start/End: Original strand, 40354750 - 40354787
Alignment:
Q  507 agctcaactagtttgagctaag-gttaaggagttggag 543  Q
    |||||||||||||||||||||| |||||||||||||||    
T  40354750 agctcaactagtttgagctaagagttaaggagttggag 40354787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 552 - 612
Target Start/End: Complemental strand, 16622653 - 16622594
Alignment:
Q  552 ggttcaaactcggatgaatgagtaaagattaatataacaactaattactaacatttttcat 612  Q
    ||||||||||||||| || ||| ||| | |||| |||||||||||||||||||||| ||||    
T  16622653 ggttcaaactcggataaaggagaaaa-actaatctaacaactaattactaacatttgtcat 16622594  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 552 - 607
Target Start/End: Complemental strand, 35451188 - 35451133
Alignment:
Q  552 ggttcaaactcggatgaatgagtaaagattaatataacaactaattactaacattt 607  Q
    |||||||||||  | ||||||||||| |||||| ||||||||||||| ||||||||    
T  35451188 ggttcaaactcaaacgaatgagtaaatattaatctaacaactaattattaacattt 35451133  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 554 - 612
Target Start/End: Original strand, 37829974 - 37830032
Alignment:
Q  554 ttcaaactcggatgaatgagtaaagattaatataacaactaattactaacatttttcat 612  Q
    ||||||| |||| ||| ||||| | |||||| |||||||||||||||||||||| ||||    
T  37829974 ttcaaacccggacgaaggagtagatattaatctaacaactaattactaacatttgtcat 37830032  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 571 - 607
Target Start/End: Complemental strand, 7913870 - 7913834
Alignment:
Q  571 gagtaaagattaatataacaactaattactaacattt 607  Q
    ||||||| ||||||||||||||||| |||||||||||    
T  7913870 gagtaaatattaatataacaactaactactaacattt 7913834  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 564 - 607
Target Start/End: Complemental strand, 3004891 - 3004848
Alignment:
Q  564 gatgaatgagtaaagattaatataacaactaattactaacattt 607  Q
    |||||||||| ||| |||||| ||||||||||||||||||||||    
T  3004891 gatgaatgagcaaatattaatctaacaactaattactaacattt 3004848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 543
Target Start/End: Original strand, 21537473 - 21537510
Alignment:
Q  507 agctcaactagtttgagctaa-ggttaaggagttggag 543  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  21537473 agctcaactagtttgagctaagggttaaggagttggag 21537510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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