View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13090_low_5 (Length: 626)
Name: NF13090_low_5
Description: NF13090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13090_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 360; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 217 - 604
Target Start/End: Original strand, 21832797 - 21833184
Alignment:
| Q |
217 |
caaacccgtaacaataaaaacataacctaactccaaaccctaatatttttgtgtcaccgccagcaccatttttgcaccaacgttaccgtctttttgtgtt |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
21832797 |
caaacccgtaacaataaaaacataacctaactccaaaccctaatatttttgtgtcaccgccagcaccatttttgcactaacgttaccgtctttttgtgtt |
21832896 |
T |
|
| Q |
317 |
cacagtttctacagttttcacgacttcgcaaaaccatggttacaacaacacattcatattcatacttacctgatgactgttggaaatgcatcttcaaatt |
416 |
Q |
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||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21832897 |
cacggtttctgcagttttcacgacttcgcaaaaccatggttacaacaacacattcaaattcatacttacctgatgactgttggaaatgcatcttcaaatt |
21832996 |
T |
|
| Q |
417 |
catcatcgacgacgacgacaacaatcgtcgctacttgtatcctctctccgctgtctccaaacaattcctctccatcatcgatcctcttcgattatcactg |
516 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21832997 |
catcatcgacgaggacgacaacaatcgtcgctacttgtatcctctctccgctgtctccaaacaattcctctccatcatcgatcctcttcgattatcactg |
21833096 |
T |
|
| Q |
517 |
actgtcctcaatccaacacgccctctcatccgtcccctcttcaaaaggttcaccaatcttacctcccttaacctctctcgcttccacg |
604 |
Q |
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| T |
21833097 |
actgtcctcaatccaacacgccctctcatccgtcccctcttcaaaagattcaccaaccttacctcccttaacctctctcgcttccacg |
21833184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 116 - 211
Target Start/End: Original strand, 21832402 - 21832497
Alignment:
| Q |
116 |
cgtaaatataacctaactccaaggatcattcagtaacgcaacagtacaaccataacctaactacaaaccctaacatttgtttcaccatccgttacc |
211 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
21832402 |
cgtaaatataacctaactccaaggatcattcagtaacgcaacagtacaaccataacctaactacaaaccctaacatttgtttcaccatctgttacc |
21832497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 21832288 - 21832347
Alignment:
| Q |
1 |
gtggagaaataagtgttgccgataatccatttcctaattgaatgaagttgaattttatgt |
60 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
21832288 |
gtggagaaataagtgttgccgataatccatttcccaattgaatgaagttgaattttatgt |
21832347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 446 - 591
Target Start/End: Complemental strand, 6417399 - 6417254
Alignment:
| Q |
446 |
gctacttgtatcctctctccgctgtctccaaacaattcctctccatcatcgatcctcttcgattatcactgactgtcctcaatccaacacgccctctcat |
545 |
Q |
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|||||||| || ||||||| ||||||||| ||| |||||||||||| | | | ||||||| |||||||| |||||||||||||||||||| || | |
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| T |
6417399 |
gctacttgaattttctctcccttgtctccaagcaactcctctccatcaccaaccgaattcgattcacactgactatcctcaatccaacacgccctttcct |
6417300 |
T |
|
| Q |
546 |
ccgtcccctcttcaaaaggttcaccaatcttacctcccttaacctc |
591 |
Q |
| |
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||| |||||| ||||| ||||| || |||| ||||| |||||| |
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|
| T |
6417299 |
ttgtcgcctctttaaaagattcacaaaccttaattccctcaacctc |
6417254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 417
Target Start/End: Complemental strand, 6433220 - 6433175
Alignment:
| Q |
372 |
atattcatacttacctgatgactgttggaaatgcatcttcaaattc |
417 |
Q |
| |
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||||||| | |||||||||||||||||| |||||||||||| |||| |
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|
| T |
6433220 |
atattcaaatttacctgatgactgttgggaatgcatcttcagattc |
6433175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 493
Target Start/End: Original strand, 45055773 - 45055858
Alignment:
| Q |
408 |
cttcaaattcatcatcgacgacgacgacaacaatcgtcgctacttgtatcctctctccgctgtctccaaacaattcctctccatca |
493 |
Q |
| |
|
|||||||||| ||||||| ||| || |||||||| ||| |||||| | |||||||| ||||||||||| ||||||||||||| |
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| T |
45055773 |
cttcaaattcctcatcgatgactacaacaacaatagtccctacttagagtctctctccctcgtctccaaacacttcctctccatca |
45055858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 434 - 575
Target Start/End: Complemental strand, 28533138 - 28532997
Alignment:
| Q |
434 |
acaacaatcgtcgctacttgtatcctctctccgctgtctccaaacaattcctctccatcatcgatcctcttcgattatcactgactgtcctcaatccaac |
533 |
Q |
| |
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||||||| |||||| ||||| | |||||||| | || ||||||| ||||||||||||| || | || ||||| ||||| ||| || |||||||||| |
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| T |
28533138 |
acaacaaccgtcgcaacttgagttctctctccaccgtatccaaacggttcctctccatcaccggacgcctccgattctcactcactctcgtcaatccaac |
28533039 |
T |
|
| Q |
534 |
acgccctctcatccgtcccctcttcaaaaggttcaccaatct |
575 |
Q |
| |
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| T |
28533038 |
accccctttcctacttagcctcttcaaaaggttcacccatct |
28532997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 553 - 593
Target Start/End: Complemental strand, 30828001 - 30827961
Alignment:
| Q |
553 |
ctcttcaaaaggttcaccaatcttacctcccttaacctctc |
593 |
Q |
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| T |
30828001 |
ctcttcaaaaggttcaccaatctcacctccctcgacctctc |
30827961 |
T |
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