View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13090_low_6 (Length: 496)

Name: NF13090_low_6
Description: NF13090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13090_low_6
NF13090_low_6
[»] scaffold0386 (2 HSPs)
scaffold0386 (55-474)||(707-1125)
scaffold0386 (55-89)||(1284-1318)
[»] chr4 (2 HSPs)
chr4 (55-474)||(33878828-33879237)
chr4 (55-89)||(33878635-33878669)
[»] chr5 (6 HSPs)
chr5 (55-471)||(13869451-13869859)
chr5 (55-374)||(27641144-27641463)
chr5 (1-47)||(43408815-43408861)
chr5 (427-471)||(27641085-27641129)
chr5 (55-89)||(13869251-13869285)
chr5 (55-89)||(27640886-27640920)
[»] chr7 (1 HSPs)
chr7 (55-474)||(29735132-29735558)
[»] chr3 (1 HSPs)
chr3 (55-441)||(49850850-49851241)
[»] chr8 (3 HSPs)
chr8 (55-223)||(38460745-38460914)
chr8 (407-474)||(38460635-38460702)
chr8 (311-360)||(38460700-38460749)


Alignment Details
Target: scaffold0386 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 55 - 474
Target Start/End: Original strand, 707 - 1125
Alignment:
Q  55 tgtggcacttacaaacatccaataaaatcatgacatatcattattannnnnnnatttaaaacaaatgaaaatagaaacagaaccatcgtcatccttttgc 154  Q
    ||||||||||||||||||||||| |||||||||||||||||||||        |||||||| ||||||||||||||||||||||||||||||||||||||    
T  707 tgtggcacttacaaacatccaatgaaatcatgacatatcattatt-tttttttatttaaaaaaaatgaaaatagaaacagaaccatcgtcatccttttgc 805  T
Q  155 aacgtggtatagatcatgttttattttgaatcgctcataaactgaatctatgttcttgttttatatttctctaatagtgtttgtgaaaatctaggaacat 254  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  806 aacgtggtatagatcatgtcttattttgaatcgctcataaactgaatctatgttcttgttttatatttctttaatagtgtttgtgaaaatctaggaacat 905  T
Q  255 gttcatcaaccttnnnnnnncattcagccaccatatctcaactcatggaagagaaaatttcaacatttcaagagatttgaatttccaaatgcaaagttat 354  Q
    |||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  906 gttcatcaaccttaaaaaaacattcagccaccatatctcaactcatggaagagaaaatttcaacatttcaagagatttgaatttccaaatgcaaagttat 1005  T
Q  355 taaaactaactattttaatataatttgacccattgctcgattggattgcaataacacccaatacagcatggtttagaaacaatctctgcatgatttggat 454  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1006 taaaactaactattttaatataatttgacccattgctcgattggattgcaataacacccaatacagcatggtttagaaacaatctctgcatgatttggat 1105  T
Q  455 ccgttaattatggtgttgca 474  Q
    ||||||||||||||||||||    
T  1106 ccgttaattatggtgttgca 1125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 89
Target Start/End: Complemental strand, 1318 - 1284
Alignment:
Q  55 tgtggcacttacaaacatccaataaaatcatgaca 89  Q
    |||| ||||||||||||||||||||||||||||||    
T  1318 tgtgacacttacaaacatccaataaaatcatgaca 1284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 55 - 474
Target Start/End: Complemental strand, 33879237 - 33878828
Alignment:
Q  55 tgtggcacttacaaacatccaataaaatcatgacatatcattattannnnnnnatttaaaacaaatgaaaatagaaacagaaccatcgtcatccttttgc 154  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||           | |||| ||||||||||||||||||||||||||||||||||||||    
T  33879237 tgtggcacttacaaacatccaatgaaatcgtgacatatcattata----------taaaaaaaaatgaaaatagaaacagaaccatcgtcatccttttgc 33879148  T
Q  155 aacgtggtatagatcatgttttattttgaatcgctcataaactgaatctatgttcttgttttatatttctctaatagtgtttgtgaaaatctaggaacat 254  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  33879147 aacgtggtatagatcatgtcttattttgaatcgctcataaactgaatctatgttcttgttttatatttctttaatagtgtttgtgaaaatctaggaacat 33879048  T
Q  255 gttcatcaaccttnnnnnnncattcagccaccatatctcaactcatggaagagaaaatttcaacatttcaagagatttgaatttccaaatgcaaagttat 354  Q
    |||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33879047 gttcatcaaccttaaaaaaacattcagccaccatatctcaactcatggaagagaaaatttcaacatttcaagagatttgaatttccaaatgcaaagttat 33878948  T
Q  355 taaaactaactattttaatataatttgacccattgctcgattggattgcaataacacccaatacagcatggtttagaaacaatctctgcatgatttggat 454  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  33878947 taaaactaactattttaatataatttgacccattgctcgattggattgcaataacacccaatacagcatggtttagaaacaatctccgcatgatttggat 33878848  T
Q  455 ccgttaattatggtgttgca 474  Q
    ||||||||||||||||||||    
T  33878847 ccgttaattatggtgttgca 33878828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 89
Target Start/End: Original strand, 33878635 - 33878669
Alignment:
Q  55 tgtggcacttacaaacatccaataaaatcatgaca 89  Q
    ||||||||||||||||||||||| |||||||||||    
T  33878635 tgtggcacttacaaacatccaatgaaatcatgaca 33878669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 55 - 471
Target Start/End: Complemental strand, 13869859 - 13869451
Alignment:
Q  55 tgtggcacttacaaacatccaataaaatcatgacatatcattattannnnnnnatttaaaacaaatgaaaatagaaacagaaccatcgtcatccttttgc 154  Q
    |||||||||||||||||| |||| |||||||||||||||||||||        |||||||| ||||||||||||||||||||||||||||||||||||||    
T  13869859 tgtggcacttacaaacattcaatgaaatcatgacatatcattatt-ttttttaatttaaaaaaaatgaaaatagaaacagaaccatcgtcatccttttgc 13869761  T
Q  155 aacgtggtatagatcatgttttattttgaatcgctcataaactgaatctatgttcttgttttatatttctctaatagtgtttgtgaaaatctaggaacat 254  Q
    | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  13869760 atcgtggtatagatcatgtcttattttgaatcgctcataaactgaatctatgttcttgttttatatttctctattagtgtttctgaaaatctaggaacat 13869661  T
Q  255 gttcatcaaccttnnnnnnncattcagccaccatatctcaactcatggaagagaaaatttcaacatttcaagagatttgaatttccaaatgcaaagttat 354  Q
           ||||||       |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  13869660 -------aaccttaaaaaaacattcagccaccatatctcaactcatggaagagaaaatttcaacctttcaagagatctgaatttccaaatgcaaagttat 13869568  T
Q  355 taaaactaactattttaatataatttgacccattgctcgattggattgcaataacacccaatacagcatggtttagaaacaatctctgcatgatttggat 454  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  13869567 taaaactaactattttaatagaatttgacccattgctcgattggattgcaataacacccaatacagcatgatttagaaacaatctctacatgatttggat 13869468  T
Q  455 ccgttaattatggtgtt 471  Q
    |||||||||||||||||    
T  13869467 ccgttaattatggtgtt 13869451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 55 - 374
Target Start/End: Complemental strand, 27641463 - 27641144
Alignment:
Q  55 tgtggcacttacaaacatccaataaaatcatgacatatcattattannnnnnnatttaaaacaaatgaaaatagaaacagaaccatcgtcatccttttgc 154  Q
    |||||||||||||||||| |||| |||||||||||||||||||||         || |||| ||||||||||||||||||||||||||||||||||||||    
T  27641463 tgtggcacttacaaacattcaatgaaatcatgacatatcattattttttttaatttaaaaaaaaatgaaaatagaaacagaaccatcgtcatccttttgc 27641364  T
Q  155 aacgtggtatagatcatgttttattttgaatcgctcataaactgaatctatgttcttgttttatatttctctaatagtgtttgtgaaaatctaggaacat 254  Q
    | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  27641363 atcgtggtatagatcatgtcttattttgaatcgctcataaactgaatctatgttcttgttttatatttctctattagtgtttctgaaaatctaggaacat 27641264  T
Q  255 gttcatcaaccttnnnnnnncattcagccaccatatctcaactcatggaagagaaaatttcaacatttcaagagatttgaatttccaaatgcaaagttat 354  Q
    |||||||||||||       |||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  27641263 gttcatcaaccttaaaaaaacattcacccaccatatgtcaactcatggaagagaaaatttcaacctttcaagagatctgaatttccaaatgcaaagttat 27641164  T
Q  355 taaaactaactattttaata 374  Q
    ||||||||||||||||||||    
T  27641163 taaaactaactattttaata 27641144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 43408815 - 43408861
Alignment:
Q  1 tgaataattaggtatttgaagagctatatgaagcagcagtgaacgag 47  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||    
T  43408815 tgaataattaggtatttgaagagctatatgaagcagcggtgaacgag 43408861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 427 - 471
Target Start/End: Complemental strand, 27641129 - 27641085
Alignment:
Q  427 ttagaaacaatctctgcatgatttggatccgttaattatggtgtt 471  Q
    ||||||||||||||| |||||||||||||||||||||||||||||    
T  27641129 ttagaaacaatctctacatgatttggatccgttaattatggtgtt 27641085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 89
Target Start/End: Original strand, 13869251 - 13869285
Alignment:
Q  55 tgtggcacttacaaacatccaataaaatcatgaca 89  Q
    ||||||||||||||||||||||| |||||||||||    
T  13869251 tgtggcacttacaaacatccaatgaaatcatgaca 13869285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 89
Target Start/End: Original strand, 27640886 - 27640920
Alignment:
Q  55 tgtggcacttacaaacatccaataaaatcatgaca 89  Q
    ||||||||||||||||||||||| |||||||||||    
T  27640886 tgtggcacttacaaacatccaatgaaatcatgaca 27640920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 55 - 474
Target Start/End: Original strand, 29735132 - 29735558
Alignment:
Q  55 tgtggcacttacaaacatccaataaaatcatgacatatcattattannnnnnnatttaaaacaaat--gaaaatagaaacagaaccatcgtcatcctttt 152  Q
    |||||||||||||||||||||||||||| ||||||||||||||||        |||||||| ||||  |||||||||||||||||||||||||| |||||    
T  29735132 tgtggcacttacaaacatccaataaaattatgacatatcattatt-ttttttaatttaaaaaaaatatgaaaatagaaacagaaccatcgtcattctttt 29735230  T
Q  153 gcaacgtggtatagatcatgttttattttgaatcgctcataaactgaatctatgttcttgttttatatttctctaatagtgtttgtgaaaatctaggaac 252  Q
    ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  29735231 gcatcgtggtatagatcatgtcttattttgaatcgctcataaactgaatctatgttcttgtttaatatttctctaatagtgtttatgaaaatctaggaac 29735330  T
Q  253 atgttcatcaaccttnnnnnnncattcagccaccatatctcaactcatggaagagaaaatttcaacatttcaagagatttgaatttccaaatgc------ 346  Q
    |||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||          
T  29735331 atgttcatcaaccttaaaaaaacattcagccaccatatctcaactcatggaagagaaaatttcaaccttttaagagatctgaatttccaaatgcatacaa 29735430  T
Q  347 aaagttattaaaactaactattttaatataatttgacccattgctcgattggattgcaataacacccaatacagcatggtttagaaacaatctctgcatg 446  Q
    |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  29735431 aaagttattaaaactaactattttaatagaatttaacccattgctcgattggattgcaataacacccaatacagtatggtttagaaacaatctctacatg 29735530  T
Q  447 atttggatccgttaattatggtgttgca 474  Q
    ||||||||||||||||||||||||||||    
T  29735531 atttggatccgttaattatggtgttgca 29735558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 55 - 441
Target Start/End: Original strand, 49850850 - 49851241
Alignment:
Q  55 tgtggcacttacaaacatccaataaaatcatgacatatcattattannnnnnnatttaaaacaaatgaaaatagaaacagaaccatcgtcatccttttgc 154  Q
    |||||||||||||||||| |||| ||||||||||||||||||| |        ||| |||| ||||||||||||||||| ||||||||||||||||||||    
T  49850850 tgtggcacttacaaacattcaatgaaatcatgacatatcattact-ttttttaattaaaaaaaaatgaaaatagaaacataaccatcgtcatccttttgc 49850948  T
Q  155 aacgtggtatagatcatgttttattttgaatcgctcataaactgaatctatgttcttgttttatatttctctaatagtgtttgtgaaaatctaggaacat 254  Q
    | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  49850949 atcgtggtatagatcatgtcttattttgaatcgctcataaactgaatctatgttcttgttttatatttctctaatagtatttctgaaaatctaggaacat 49851048  T
Q  255 gttc---atcaaccttnnnnnnncattcagccaccatatctcaactcatggaagagaaaatttcaacatttcaagagatttgaatttccaaatgcaaagt 351  Q
    ||||   |||||||||       ||||| |||| ||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||    
T  49851049 gttcaatatcaaccttaaaaaaacattcggccatcatatctcaactcatggaagagaaaatttcaaccttttaagagatctgaatttccaaatgcaaagt 49851148  T
Q  352 tattaaaactaactattttaatataatttgacccattgctcgattggattgc---aataacacccaatacagcatggtttagaaacaatctct 441  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||||||   ||||||||||||||||||||| ||||||||||||||||    
T  49851149 tattaaaactaactattttaatagaatttgacccattgctcaattggattgcaataataacacccaatacagcatgatttagaaacaatctct 49851241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 121; Significance: 9e-62; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 55 - 223
Target Start/End: Complemental strand, 38460914 - 38460745
Alignment:
Q  55 tgtggcacttacaaacatccaataaaatcatgacatatcattattannnnnnnatttaaaacaaa-tgaaaatagaaacagaaccatcgtcatccttttg 153  Q
    ||||||||||||||||||||||| |||||||||||||||||||||        |||||||| ||| ||||||||||||||||||||||||||||||||||    
T  38460914 tgtggcacttacaaacatccaatgaaatcatgacatatcattatttatttttaatttaaaaaaaaatgaaaatagaaacagaaccatcgtcatccttttg 38460815  T
Q  154 caacgtggtatagatcatgttttattttgaatcgctcataaactgaatctatgttcttgttttatatttc 223  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  38460814 caacgtggtatagatcatgtcttattttgaatcgctcataaactaaatctatgttcttgttttatatttc 38460745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 407 - 474
Target Start/End: Complemental strand, 38460702 - 38460635
Alignment:
Q  407 aacacccaatacagcatggtttagaaacaatctctgcatgatttggatccgttaattatggtgttgca 474  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38460702 aacacccaatacaacatggtttagaaacaatctctgcatgatttggatccgttaattatggtgttgca 38460635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 311 - 360
Target Start/End: Complemental strand, 38460749 - 38460700
Alignment:
Q  311 atttcaacatttcaagagatttgaatttccaaatgcaaagttattaaaac 360  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  38460749 atttcaacctttcaagagatttgaatttccaaatgcaaagttattaaaac 38460700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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