View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13090_low_8 (Length: 471)

Name: NF13090_low_8
Description: NF13090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13090_low_8
NF13090_low_8
[»] chr4 (3 HSPs)
chr4 (20-461)||(7653188-7653616)
chr4 (129-195)||(9109802-9109868)
chr4 (284-332)||(9109680-9109728)
[»] chr5 (2 HSPs)
chr5 (90-456)||(21902964-21903344)
chr5 (20-71)||(21905454-21905505)
[»] chr7 (1 HSPs)
chr7 (21-443)||(11362383-11362816)
[»] chr6 (2 HSPs)
chr6 (20-443)||(4059334-4059765)
chr6 (117-178)||(7863572-7863633)
[»] chr3 (2 HSPs)
chr3 (20-357)||(20592339-20592681)
chr3 (346-386)||(20592297-20592337)
[»] chr2 (1 HSPs)
chr2 (220-461)||(33172165-33172412)


Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 20 - 461
Target Start/End: Complemental strand, 7653616 - 7653188
Alignment:
Q  20 caaaccaccaccgtgaaacccaaactcagaccccaaaccaccgtgaaacaccatcatgaaacactatctatgtctctcttcatcgctgtctctctgcatc 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |             ||||||||||||||||||||||||||||||    
T  7653616 caaaccaccaccgtgaaacccaaactcagaccccaaaccaccgtgaaacaccatctt-------------tgtctctcttcatcgctgtctctctgcatc 7653530  T
Q  120 ttcaacgtttgtctcaaattccagctcaaaaaggtaacataactcaaatccttcttcaactaacttcaatctatgtannnnnnnnnnnnnnnnnnnnnnn 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                           
T  7653529 ttcaacgtttgtctcaaattccagctcaaaaaggtaacataactcaaatccttcttcaactaacttcaatctatgtatttttgttttgattttcgttttg 7653430  T
Q  220 aaattgtttctcagtagctatcgcacaatcgtcgagtcgccgtgaaaaagtgttttgtcttcgtcgccgcaaaatcgtaatttctaggcaaatcttctaa 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||   ||||||||||||| ||||||||||||||||| |||||||||||    
T  7653429 aaattgtttctcagtagctatcgcacaatcgtcgagtcgccgtgaaacagtgttccatcttcgtcgccgcgaaatcgtaatttctaggtaaatcttctaa 7653330  T
Q  320 tctctgtgtttttcaattgtttaattgtttttgattttgaattgctctaggtaaactttaattgtaattgtcaactttgtgttgaatcgtaattgtaatt 419  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  7653329 tctctgtgtttttcaattgtttaattgtttttgattttgaattgttctaggtaaactttaattgtaattgtcaactttgtgttgaatcgtaattttaatt 7653230  T
Q  420 gttataggtaaattgattttcgttttttattttgaatctgtg 461  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  7653229 gttataggtaaattgattttcgtttttgattttgaatctgtg 7653188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 129 - 195
Target Start/End: Complemental strand, 9109868 - 9109802
Alignment:
Q  129 tgtctcaaattccagctcaaaaaggtaacataactcaaatccttcttcaactaacttcaatctatgt 195  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  9109868 tgtctcaaattccagctcaaaaaggtaacctaactcaaattcttcttcaactaacttcaatctatgt 9109802  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 284 - 332
Target Start/End: Complemental strand, 9109728 - 9109680
Alignment:
Q  284 cgccgcaaaatcgtaatttctaggcaaatcttctaatctctgtgttttt 332  Q
    |||||| ||||||||||||||||| ||||| | ||||||||||||||||    
T  9109728 cgccgcgaaatcgtaatttctaggtaaatcctgtaatctctgtgttttt 9109680  T

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Target: chr5 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 90 - 456
Target Start/End: Complemental strand, 21903344 - 21902964
Alignment:
Q  90 tgtctctcttcatcgctgtctctctgcatcttcaacgtttgtctcaaattccagctcaaaaaggtaacataactcaaatccttcttcaactaacttcaat 189  Q
    ||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  21903344 tgtctctctccatcgctgtctctctacatcttcaacgtctgtctcaaattccagctcaaaatggtaacataactcaaatccttcttcaactaacttcaat 21903245  T
Q  190 ctatgtannnnnnnnnnnnnnnnnnnnnnnaaattgtttctcagtagctatcgcacaatcgtcgagtcgccgtgaaaaagtgttttgtcttcgtcgccgc 289  Q
    |||||||                       |||||||||||||| |||||||||||| ||| |||||||||||||||  |||||  ||||||||| ||||    
T  21903244 ctatgtatttttgttttgattttcattttgaaattgtttctcagaagctatcgcacagtcgccgagtcgccgtgaaaccgtgttccgtcttcgtcaccgc 21903145  T
Q  290 aaaatcgtaatttctaggcaaatcttctaatctctgtgtttttcaattgtttaattgt--------------ttttgattttgaattgctctaggtaaac 375  Q
     ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||              |||||||||||||||| ||||||||||     
T  21903144 gaaatcgtaatttctaggtaaatcttctaatctctgtgtttttcaattgtttaattgttttttatttttcgtttttgattttgaattgttctaggtaaat 21903045  T
Q  376 tttaattgtaattgtcaactttgtgttgaatcgtaattgtaattgttataggtaaattgattttcgttttttattttgaat 456  Q
    ||||||||||||| |||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||    
T  21903044 tttaattgtaattatcaagtttgtgttgaatcgtaattttaattattataggtaaattgattttcgtttttgattttgaat 21902964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 21905505 - 21905454
Alignment:
Q  20 caaaccaccaccgtgaaacccaaactcagaccccaaaccaccgtgaaacacc 71  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  21905505 caaaccaccaccgtgaaacccaaattcagaccccaaaccaccgtgaaacacc 21905454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 175; Significance: 5e-94; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 21 - 443
Target Start/End: Original strand, 11362383 - 11362816
Alignment:
Q  21 aaaccaccaccgtgaaacccaaactcagaccccaaaccaccgtgaaacaccatca-tgaaacactatctatgtctctcttcatcgctgtctctctgcatc 119  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||   ||| |||  ||||||||| ||||| |||||| || ||||    
T  11362383 aaaccaccaccgtgaaacccaaagtcagaccccaaaccaccgtgaaacaccatctctg---caccatcgttgtctctctacatcgttgtctcgctacatc 11362479  T
Q  120 ttcaacgtttgtctcaaattccagctcaaaaaggtaacataactcaaatcc-ttcttcaactaacttcaatctatgtannnnnnnnnnnnnnnnnnnnnn 218  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||                          
T  11362480 ttcaacgtcggtctcaaattccagctcaaaaaggtaacataactcaaatcctttcttcaactaacttcaatctatgtatttttgtttcgattttcatttt 11362579  T
Q  219 naaattgtttctcagtagctatcgcacaatcgtcgagtcgccgtgaaaaagtgttttgtcttcgtcgccgcaaaatcgtaatttctaggcaaatcttcta 318  Q
     |||||||||||| | |||||||||||||||| |||||||||||||||   || ||  |||||||||| || ||||||||||||||||| ||||||||||    
T  11362580 gaaattgtttctctgaagctatcgcacaatcgccgagtcgccgtgaaaccatg-ttcctcttcgtcgctgcgaaatcgtaatttctaggtaaatcttcta 11362678  T
Q  319 atctctgtgtttttcaattgtttaatt-------------gtttttgattttgaattgctctaggtaaactttaattgtaattgtcaactttgtgttgaa 405  Q
    |||||||||||||||||||||||||||             |||||||||||||||||| | |||||||| ||||||||||||| ||||||||||||||||    
T  11362679 atctctgtgtttttcaattgtttaattgttttttattttcgtttttgattttgaattgttgtaggtaaattttaattgtaattatcaactttgtgttgaa 11362778  T
Q  406 tcgtaattgtaattgttataggtaaattgattttcgtt 443  Q
    | |||||| |||||||||||||||||||||||||||||    
T  11362779 tggtaattttaattgttataggtaaattgattttcgtt 11362816  T

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Target: chr6 (Bit Score: 159; Significance: 2e-84; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 20 - 443
Target Start/End: Original strand, 4059334 - 4059765
Alignment:
Q  20 caaaccaccaccgtgaaacccaaactcagaccccaaaccaccgtgaaacaccatca-tgaaacactatctatgtctctcttcatcgctgtctctctgcat 118  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||   ||| |||  ||||||||| |||||||||||| || |||    
T  4059334 caaaccaccaccgtgaaacccaaagtcagaccccaaaccaccgtgaaacaccatctctg---caccatcgttgtctctctccatcgctgtctcgctacat 4059430  T
Q  119 cttcaacgtttgtctcaaattccagctcaaaaaggtaacataactcaaatcc-ttcttcaactaacttcaatctatgtannnnnnnnnnnnnnnnnnnnn 217  Q
    |||||||||  |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||                         
T  4059431 cttcaacgtcggtctcaaattccagatcaaaaaggtaacataactcaaatcctttcttcaactaacttcaatctatgtatttttgtttcaattttcattt 4059530  T
Q  218 nnaaattgtttctcagtagctatcgcacaatcgtcgagtcgccgtgaaaaagtgttttgtcttcgtcgccgcaaaatcgtaatttctaggcaaatcttct 317  Q
      ||||||||||||   |||||||||||||||| |||||||||||||||   |||    || || ||| ||| | ||||||||||||||| |||||||||    
T  4059531 tgaaattgtttctctaaagctatcgcacaatcgccgagtcgccgtgaaaccatgt----tcctcttcgtcgcgacatcgtaatttctaggtaaatcttct 4059626  T
Q  318 aatctctgtgtttttcaattgtttaatt-------------gtttttgattttgaattgctctaggtaaactttaattgtaattgtcaactttgtgttga 404  Q
    ||||||||||||||||||||||||||||             |||||||||||||||||| | |||||||| ||||||||||||| |||||||||||||||    
T  4059627 aatctctgtgtttttcaattgtttaattgttttttattttcgtttttgattttgaattgttgtaggtaaattttaattgtaattatcaactttgtgttga 4059726  T
Q  405 atcgtaattgtaattgttataggtaaattgattttcgtt 443  Q
    || |||||| |||||||||||||||||||||||||||||    
T  4059727 atggtaattttaattgttataggtaaattgattttcgtt 4059765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 117 - 178
Target Start/End: Complemental strand, 7863633 - 7863572
Alignment:
Q  117 atcttcaacgtttgtctcaaattccagctcaaaaaggtaacataactcaaatccttcttcaa 178  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  7863633 atcttcaacgtctgtctcaaattccagctcaaaaaggtaacctaactcaaattcttcttcaa 7863572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 138; Significance: 6e-72; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 20 - 357
Target Start/End: Complemental strand, 20592681 - 20592339
Alignment:
Q  20 caaaccaccaccgtgaaacccaaactcagaccccaaaccaccgtgaaacaccatcatgaaacact-----atctatgtctctcttcatcgctgtctctct 114  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||     || | |||||||||  ||| || |||||||    
T  20592681 caaaccaccactgtgaaacccaagctcagaccccaaaccaccgtgaaacaccatcgtgaaacactgcaccatttctgtctctctcaatctctctctctct 20592582  T
Q  115 gcatcttcaacgtttgtctcaaattccagctcaaaaaggtaacataactcaaatccttcttcaactaacttcaatctatgtannnnnnnnnnnnnnnnnn 214  Q
    ||| | ||   || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                      
T  20592581 gcaccatctctgtctctctcaaattccagctcaaaaaggtaacataactcaaatccttcttcaactaacttcaatctatgtatttttgttttgattttcg 20592482  T
Q  215 nnnnnaaattgtttctcagtagctatcgcacaatcgtcgagtcgccgtgaaaaagtgttttgtcttcgtcgccgcaaaatcgtaatttctaggcaaatct 314  Q
         |||||||||||||| |||||||||||| ||| |||||||||||||||  |||||  |||||||||||||| ||||||||||||||||| |||||     
T  20592481 ttttgaaattgtttctcagcagctatcgcacattcgccgagtcgccgtgaaaccgtgttccgtcttcgtcgccgcgaaatcgtaatttctaggtaaatcc 20592382  T
Q  315 tctaatctctgtgtttttcaattgtttaattgtttttgatttt 357  Q
    | ||||||||||||||||||||||||||||| ||||| |||||    
T  20592381 tgtaatctctgtgtttttcaattgtttaattattttttatttt 20592339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 346 - 386
Target Start/End: Complemental strand, 20592337 - 20592297
Alignment:
Q  346 gtttttgattttgaattgctctaggtaaactttaattgtaa 386  Q
    |||||||||||||||||| |||||||||| |||||| ||||    
T  20592337 gtttttgattttgaattgttctaggtaaattttaatcgtaa 20592297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 116; Significance: 8e-59; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 220 - 461
Target Start/End: Original strand, 33172165 - 33172412
Alignment:
Q  220 aaattgtttctcagtagctatcgcacaatcgtcgagtcgccgtgaaaaagtgttttgtcttcgtcgccgcaaaatcgtaatttctaggcaaatcttctaa 319  Q
    |||||||||||||| ||||||||||||        ||||||||||||   ||||  |||||| ||||||| ||||||||||||||||| |||||||||||    
T  33172165 aaattgtttctcagcagctatcgcaca--------gtcgccgtgaaaccttgttccgtcttcatcgccgcgaaatcgtaatttctaggtaaatcttctaa 33172256  T
Q  320 tctctgtgtttttcaattgtttaattgttt--------------ttgattttgaattgctctaggtaaactttaattgtaattgtcaactttgtgttgaa 405  Q
    ||||||||||||||||||||||||||||||              |||||||||||||| |||||||||| ||||||||||||| |||||||||||| |||    
T  33172257 tctctgtgtttttcaattgtttaattgttttttatttttcgtttttgattttgaattgttctaggtaaattttaattgtaattatcaactttgtgtagaa 33172356  T
Q  406 tcgtaattgtaattgttataggtaaattgattttcgttttttattttgaatctgtg 461  Q
    |||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||    
T  33172357 tcgtaattttaattgttataagtaaattgattttcgtttttgattttgaatctgtg 33172412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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