View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13090_low_9 (Length: 461)

Name: NF13090_low_9
Description: NF13090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13090_low_9
NF13090_low_9
[»] chr6 (1 HSPs)
chr6 (6-348)||(23111906-23112257)
[»] chr4 (9 HSPs)
chr4 (115-253)||(2737705-2737843)
chr4 (264-348)||(56331301-56331385)
chr4 (115-253)||(38372638-38372776)
chr4 (119-216)||(39264727-39264824)
chr4 (119-253)||(45065539-45065668)
chr4 (115-225)||(48997040-48997150)
chr4 (223-253)||(39264677-39264707)
chr4 (127-180)||(16041404-16041457)
chr4 (127-195)||(40140517-40140585)
[»] chr1 (2 HSPs)
chr1 (121-253)||(3324887-3325019)
chr1 (132-217)||(48315107-48315192)
[»] chr2 (3 HSPs)
chr2 (119-249)||(23757669-23757799)
chr2 (159-253)||(12197381-12197478)
chr2 (127-182)||(33522369-33522424)
[»] chr8 (4 HSPs)
chr8 (115-219)||(28733215-28733319)
chr8 (168-253)||(10227321-10227406)
chr8 (146-225)||(10227250-10227328)
chr8 (127-225)||(42476517-42476615)
[»] chr5 (1 HSPs)
chr5 (115-225)||(37344564-37344674)
[»] chr3 (5 HSPs)
chr3 (136-212)||(50301850-50301926)
chr3 (127-216)||(32862061-32862150)
chr3 (132-211)||(10773480-10773559)
chr3 (213-253)||(25638461-25638501)
chr3 (127-225)||(4317461-4317559)


Alignment Details
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 6 - 348
Target Start/End: Original strand, 23111906 - 23112257
Alignment:
Q  6 agtgagatgaatacgaaagagcatacctttagagccataagtatgga--------------gtgttcgcctatcatctcacaatgctaagtacctacagc 91  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||              |||||||||||||||||||||| ||||||||||||||||    
T  23111906 agtgacatgaatacgtaagagcatacctttagagccataagtatggactttcttacatggagtgttcgcctatcatctcacaaggctaagtacctacagc 23112005  T
Q  92 aagccgaagaacatataaccaatgttcggtttggttaaccgttcggttcaattaatgaactgtttttaaaataacggttcggttcaataaccactgtaat 191  Q
    ||||||||||||||||||||||||    ||| ||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23112006 aagccgaagaacatataaccaatg----gttcggtt--cggttcggttcaattaatgaactgtttttaaaataacggttcggttcaataaccactgtaat 23112099  T
Q  192 ggtttaattaattttcgtttggttcggtccggttcagtttttggatatttttgcccacccct-nnnnnnncttacttaatgcaaatattgtgcggtgctt 290  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||        ||||||||||||||||||||||| ||||||    
T  23112100 ggtttaattaattttcgtttggttcggttcggttcagtttttggatatttttgcccacctctaaataaaacttacttaatgcaaatattgtgcagtgctt 23112199  T
Q  291 gaatgaatgattctgaacagcctagatgcatcaaagaagttcaaaactaactggtata 348  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  23112200 gaatgaatgattctgaacagcctagatgcatcaaagaagttcaaaagtaactagtata 23112257  T

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Target: chr4 (Bit Score: 91; Significance: 6e-44; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 115 - 253
Target Start/End: Original strand, 2737705 - 2737843
Alignment:
Q  115 gttcggtttggttaaccgttcggttcaattaatgaactgtttttaaaataacggttcggttcaataaccactgtaatggtttaattaattttcgtttggt 214  Q
    |||||||| |||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||||| |||||||||| | ||||||||  ||||||    
T  2737705 gttcggttcggttaaccgttcggttcagttaatgatttgtttttaaaataacggttcggttcaataaccaatgtaatggttcagttaattttaatttggt 2737804  T
Q  215 tcggtccggttcagtttttggatatttttgcccacccct 253  Q
    ||||| ||||||||||||| ||||||||| |||||||||    
T  2737805 tcggttcggttcagtttttagatatttttacccacccct 2737843  T

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Target: chr4; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 264 - 348
Target Start/End: Complemental strand, 56331385 - 56331301
Alignment:
Q  264 acttaatgcaaatattgtgcggtgcttgaatgaatgattctgaacagcctagatgcatcaaagaagttcaaaactaactggtata 348  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  56331385 acttaatgcaaatattgtgcagtgcttgaatgaatgattctgaacagcctagatgcatcaaagaagttcaaaactagcaggtata 56331301  T

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Target: chr4; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 115 - 253
Target Start/End: Original strand, 38372638 - 38372776
Alignment:
Q  115 gttcggtttggttaaccgttcggttcaattaatgaactgtttttaaaataacggttcggttcaataaccactgtaatggtttaattaattttcgtttggt 214  Q
    |||||||| ||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||| || ||| ||| | |||||||| |||| ||    
T  38372638 gttcggttcggttaaccgctcggttcagttaatgaactgtttttaaaataactgttcggttcaataaccaatgcaatagttcagttaattttagtttagt 38372737  T
Q  215 tcggtccggttcagtttttggatatttttgcccacccct 253  Q
    ||||| || |||  |||||  ||||||||||||||||||    
T  38372738 tcggttcgattcgatttttaaatatttttgcccacccct 38372776  T

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Target: chr4; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 119 - 216
Target Start/End: Complemental strand, 39264824 - 39264727
Alignment:
Q  119 ggtttggttaaccgttcggttcaattaatgaactgtttttaaaataacggttcggttcaataaccactgtaatggtttaattaattttcgtttggttc 216  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||| ||||||||||   |||||||| |||||||||    
T  39264824 ggttcggttaaccgttcggttcagttaatgaactgtttttaaaataatggttcagttcaataaccaatgtaatggttcggttaattttagtttggttc 39264727  T

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Target: chr4; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 119 - 253
Target Start/End: Complemental strand, 45065668 - 45065539
Alignment:
Q  119 ggtttggttaaccgttcggttcaattaatgaactgtttttaaaataacggttcggttcaataaccactgtaatggtttaattaattttcgtttggttcgg 218  Q
    |||| ||||||||||||| |||| |||||||||||||||||||||||||  ||| ||||||||||| ||||||| || |  ||||||| ||||||||       
T  45065668 ggttcggttaaccgttcgattcagttaatgaactgtttttaaaataacgactcgattcaataaccaatgtaatgattcagctaattttagtttggtt--- 45065572  T
Q  219 tccggttcagtttttggatatttttgcccacccct 253  Q
      |||||| ||||||||||||||||||||| ||||    
T  45065571 --cggttcggtttttggatatttttgcccatccct 45065539  T

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Target: chr4; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 115 - 225
Target Start/End: Original strand, 48997040 - 48997150
Alignment:
Q  115 gttcggtttggttaaccgttcggttcaattaatgaactgtttttaaaataacggttcggttcaataaccactgtaatggtttaattaattttcgtttggt 214  Q
    ||||||||  |||||||||||| |||| |||||||||||||||||||||||||||| |||| |||||||| |||| |||||   ||||||||  ||||||    
T  48997040 gttcggttcagttaaccgttcgattcagttaatgaactgtttttaaaataacggtttggtttaataaccaatgtagtggttcggttaattttaatttggt 48997139  T
Q  215 tcggtccggtt 225  Q
    || || |||||    
T  48997140 tcagttcggtt 48997150  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 253
Target Start/End: Complemental strand, 39264707 - 39264677
Alignment:
Q  223 gttcagtttttggatatttttgcccacccct 253  Q
    |||||||||||||||||||||||||||||||    
T  39264707 gttcagtttttggatatttttgcccacccct 39264677  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 180
Target Start/End: Complemental strand, 16041457 - 16041404
Alignment:
Q  127 taaccgttcggttcaattaatgaactgtttttaaaataacggttcggttcaata 180  Q
    |||| |||||||||| |||||||||||| || |||||| |||||| ||||||||    
T  16041457 taacggttcggttcagttaatgaactgtcttcaaaatagcggttcagttcaata 16041404  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 127 - 195
Target Start/End: Complemental strand, 40140585 - 40140517
Alignment:
Q  127 taaccgttcggttcaattaatgaactgtttttaaaataacggttcggttcaataaccactgtaatggtt 195  Q
    |||| |||||||||| |||||||||||| || |||||| |||||| ||||| || ||||| ||| ||||    
T  40140585 taacggttcggttcagttaatgaactgtcttcaaaatagcggttcagttcattatccactataaaggtt 40140517  T

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Target: chr1 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 121 - 253
Target Start/End: Original strand, 3324887 - 3325019
Alignment:
Q  121 tttggttaaccgttcggttcaattaatgaactgtttttaaaataacggttcggttcaataaccactgtaatggtttaattaattttcgtttggttcggtc 220  Q
    |||||||||||||| |||||| |||||||| |||||||||||||||||||||||| |||||||| |||||||||| | |||||||| ||||||||| ||     
T  3324887 tttggttaaccgtttggttcagttaatgaattgtttttaaaataacggttcggtttaataaccaatgtaatggttcagttaattttagtttggttcagtt 3324986  T
Q  221 cggttcagtttttggatatttttgcccacccct 253  Q
    ||||||| |||||||||||||||||||||||||    
T  3324987 cggttcaatttttggatatttttgcccacccct 3325019  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 132 - 217
Target Start/End: Original strand, 48315107 - 48315192
Alignment:
Q  132 gttcggttcaattaatgaactgtttttaaaataacggttcggttcaataaccactgtaatggtttaattaattttcgtttggttcg 217  Q
    |||||||||| |||||||||||||||||||||||| ||||| || ||||| || |||||||||| | |||||||| ||||||||||    
T  48315107 gttcggttcagttaatgaactgtttttaaaataactgttcgatttaataatcaatgtaatggttcagttaattttagtttggttcg 48315192  T

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Target: chr2 (Bit Score: 83; Significance: 4e-39; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 119 - 249
Target Start/End: Complemental strand, 23757799 - 23757669
Alignment:
Q  119 ggtttggttaaccgttcggttcaattaatgaactgtttttaaaataacggttcggttcaataaccactgtaatggtttaattaattttcgtttggttcgg 218  Q
    ||||| ||||||||||||||||| ||||| || |||| |||||||||||| ||||||||||||||| |||||||||| |||||||||| |||||||||||    
T  23757799 ggtttagttaaccgttcggttcagttaataaattgttcttaaaataacggatcggttcaataaccaatgtaatggttcaattaattttagtttggttcgg 23757700  T
Q  219 tccggttcagtttttggatatttttgcccac 249  Q
    | ||||||||||||| |||||||||| ||||    
T  23757699 ttcggttcagttttttgatatttttgtccac 23757669  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 159 - 253
Target Start/End: Complemental strand, 12197478 - 12197381
Alignment:
Q  159 aaaataacggttcggttcaataaccactgtaatggtttaattaattttcgtttggtt---cggtccggttcagtttttggatatttttgcccacccct 253  Q
    |||||||||||||||||||||||||| ||||||||||   |||||||| ||| ||||   | || |||||| |||||||| ||||||||| |||||||    
T  12197478 aaaataacggttcggttcaataaccagtgtaatggttcggttaattttggttcggtttggccgttcggttcggtttttggttatttttgctcacccct 12197381  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 182
Target Start/End: Complemental strand, 33522424 - 33522369
Alignment:
Q  127 taaccgttcggttcaattaatgaactgtttttaaaataacggttcggttcaataac 182  Q
    |||||||| |||| | ||| |||| |||||||||||||||||||| ||||||||||    
T  33522424 taaccgtttggtttagttagtgaattgtttttaaaataacggttcagttcaataac 33522369  T

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Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 115 - 219
Target Start/End: Complemental strand, 28733319 - 28733215
Alignment:
Q  115 gttcggtttggttaaccgttcggttcaattaatgaactgtttttaaaataacggttcggttcaataaccactgtaatggtttaattaattttcgtttggt 214  Q
    |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||| |||||||| ||||||| || | |||||||| |||| ||    
T  28733319 gttcggtttggttaaccgtttggttcagttaatgaactgtttttaaaataacggttctgtttaataaccaatgtaatgattcagttaattttagtttagt 28733220  T
Q  215 tcggt 219  Q
    |||||    
T  28733219 tcggt 28733215  T

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Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 168 - 253
Target Start/End: Original strand, 10227321 - 10227406
Alignment:
Q  168 gttcggttcaataaccactgtaatggtttaattaattttcgtttggttcggtccggttcagtttttggatatttttgcccacccct 253  Q
    |||||||| |||||||| |||||||||| | |||||||| ||||||||| || |||||||||||||||||||||||||||||||||    
T  10227321 gttcggtttaataaccaatgtaatggttcagttaattttagtttggttcagttcggttcagtttttggatatttttgcccacccct 10227406  T

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Target: chr8; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 146 - 225
Target Start/End: Original strand, 10227250 - 10227328
Alignment:
Q  146 atgaactgtttttaaaataacggttcggttcaataaccactgtaatggtttaattaattttcgtttggttcggtccggtt 225  Q
    ||||||| ||||||||| ||||||||||||||||||||| |||||||||| | |||||||| ||||||||| || |||||    
T  10227250 atgaactttttttaaaa-aacggttcggttcaataaccaatgtaatggttcagttaattttagtttggttcagttcggtt 10227328  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 127 - 225
Target Start/End: Original strand, 42476517 - 42476615
Alignment:
Q  127 taaccgttcggttcaattaatgaactgtttttaaaataacggttcggttcaataaccactgtaatggtttaattaattttcgtttggttcggtccggtt 225  Q
    |||||||| | |||| ||| |||| |||||||||||||||||||| |||||||||| | |  ||| ||||| |||||||| ||||||||| || |||||    
T  42476517 taaccgtttgattcagttagtgaattgtttttaaaataacggttcagttcaataactaatacaatagtttagttaattttagtttggttcagttcggtt 42476615  T

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Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 115 - 225
Target Start/End: Complemental strand, 37344674 - 37344564
Alignment:
Q  115 gttcggtttggttaaccgttcggttcaattaatgaactgtttttaaaataacggttcggttcaataaccactgtaatggtttaattaattttcgtttggt 214  Q
    |||||||| ||||||| |||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||| || | |||||||| ||||| |    
T  37344674 gttcggttcggttaactgttcggttcggttaatgaactgtttttaaaataacggttcggttcaataaccaatgtaatgattcagttaattttagtttgat 37344575  T
Q  215 tcggtccggtt 225  Q
    || || |||||    
T  37344574 tcagttcggtt 37344564  T

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Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 136 - 212
Target Start/End: Complemental strand, 50301926 - 50301850
Alignment:
Q  136 ggttcaattaatgaactgtttttaaaataacggttcggttcaataaccactgtaatggtttaattaattttcgtttg 212  Q
    |||||| ||||||||||||||||||||||| ||||||| |||||||||| |||||||||| | |||||||| |||||    
T  50301926 ggttcagttaatgaactgtttttaaaataatggttcggatcaataaccaatgtaatggttcagttaattttagtttg 50301850  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 127 - 216
Target Start/End: Complemental strand, 32862150 - 32862061
Alignment:
Q  127 taaccgttcggttcaattaatgaactgtttttaaaataacggttcggttcaataaccactgtaatggtttaattaattttcgtttggttc 216  Q
    ||||||||||||||| ||| |||| ||||||||||||||||||| ||||||||||  | || |||| || | |||||||| |||||||||    
T  32862150 taaccgttcggttcagttagtgaattgtttttaaaataacggtttggttcaataaataatgcaatgattcagttaattttagtttggttc 32862061  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 132 - 211
Target Start/End: Complemental strand, 10773559 - 10773480
Alignment:
Q  132 gttcggttcaattaatgaactgtttttaaaataacggttcggttcaataaccactgtaatggtttaattaattttcgttt 211  Q
    |||||||||| |||||  || ||||||||||||||||||||||||||||| || |  ||||||| | |||||||| ||||    
T  10773559 gttcggttcagttaattgaccgtttttaaaataacggttcggttcaataatcaataaaatggttcagttaattttagttt 10773480  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 25638501 - 25638461
Alignment:
Q  213 gttcggtccggttcagtttttggatatttttgcccacccct 253  Q
    ||||||| ||||||||||||||| |||||||||||||||||    
T  25638501 gttcggttcggttcagtttttggttatttttgcccacccct 25638461  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 225
Target Start/End: Original strand, 4317461 - 4317559
Alignment:
Q  127 taaccgttcggttcaattaatgaactgtttttaaaataacggttcggttcaataaccactgtaatggtttaattaattttcgtttggttcggtccggtt 225  Q
    |||| ||||| |||| |||||||||||| || |||||| |||||| |||||||| ||||| ||| ||||   |||||||| || ||| ||||| |||||    
T  4317461 taacggttcgattcagttaatgaactgtcttcaaaatagcggttcagttcaatatccactataaaggttcggttaattttagtatggatcggttcggtt 4317559  T

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