View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13091_high_11 (Length: 282)

Name: NF13091_high_11
Description: NF13091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13091_high_11
NF13091_high_11
[»] chr2 (2 HSPs)
chr2 (106-282)||(1158258-1158434)
chr2 (13-41)||(1158452-1158480)


Alignment Details
Target: chr2 (Bit Score: 161; Significance: 6e-86; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 106 - 282
Target Start/End: Complemental strand, 1158434 - 1158258
Alignment:
Q  106 atcaacatctccttttctttcctctttcactcgttaattcacaccaaacaatatatttaatgtactcccccttgacatctttttctttcttcccaccttc 205  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  1158434 atcaacatctctttttctttcctctttcactcgttaattcacatcaaacaatatatttaatgtactcccccttgacatctttttctttcttcccaccatc 1158335  T
Q  206 atcatctatcctcactttattctcacaatcaaacattaacatagtaaagtatactagataacgagtgtcatgactct 282  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1158334 atcatccatcctcactttattctcacaatcaaacattaacatagtaaagtatactagataacgagtgtcatgactct 1158258  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 41
Target Start/End: Complemental strand, 1158480 - 1158452
Alignment:
Q  13 aatatactagccgggtcaattggatgaag 41  Q
    |||||||||||||||||||||||||||||    
T  1158480 aatatactagccgggtcaattggatgaag 1158452  T

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