View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13091_high_12 (Length: 265)

Name: NF13091_high_12
Description: NF13091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13091_high_12
NF13091_high_12
[»] chr1 (19 HSPs)
chr1 (9-265)||(3379343-3379599)
chr1 (9-137)||(3362460-3362588)
chr1 (9-169)||(3373416-3373576)
chr1 (11-136)||(4334187-4334312)
chr1 (59-136)||(4322347-4322424)
chr1 (23-127)||(2007223-2007327)
chr1 (9-131)||(3217770-3217892)
chr1 (71-136)||(3341995-3342060)
chr1 (23-127)||(2012706-2012810)
chr1 (10-134)||(6601008-6601132)
chr1 (17-129)||(1793451-1793563)
chr1 (23-127)||(2011209-2011313)
chr1 (23-123)||(2020466-2020566)
chr1 (60-131)||(3193366-3193437)
chr1 (60-131)||(3202184-3202255)
chr1 (60-131)||(3211021-3211092)
chr1 (31-140)||(2947732-2947841)
chr1 (226-258)||(3373302-3373334)
chr1 (39-131)||(6591754-6591846)
[»] chr2 (4 HSPs)
chr2 (9-131)||(20953718-20953840)
chr2 (9-137)||(20935174-20935302)
chr2 (9-137)||(20924173-20924301)
chr2 (9-131)||(39274720-39274848)
[»] chr4 (1 HSPs)
chr4 (17-137)||(21238223-21238343)
[»] chr5 (1 HSPs)
chr5 (61-137)||(17970509-17970585)


Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 9 - 265
Target Start/End: Complemental strand, 3379599 - 3379343
Alignment:
Q  9 agcaaagggcagccgaaatttccttcaagacattgaagtttatacataaggaaagataactcagatcgatacaaggtgtaggaagctttactggtacatc 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  3379599 agcaaagggcagccgaaatttccttcaagacattgaagtttatacataaggaaagataacttagatcgatacaaggtgtaggaagctttactgatacatc 3379500  T
Q  109 acctgcagccaaatactgaagcaaaacaggagggcgtcactaattgagtatatattgtttttgatactttacaaatcaagagattcatattatatctata 208  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  3379499 acctgcagccaaatactgaagcaaaacaggagggcgtcactaaatgagtatatattgtttttgatactttacaaatcaagagattcatattatatctgta 3379400  T
Q  209 ggggccgggagtagggattaaacaagaattaggttagtcactcctacagttaagttc 265  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3379399 ggggccgggagtagggattaaacaagaattaggttagtcactcctacagttaagttc 3379343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 9 - 137
Target Start/End: Complemental strand, 3362588 - 3362460
Alignment:
Q  9 agcaaagggcagccgaaatttccttcaagacattgaagtttatacataaggaaagataactcagatcgatacaaggtgtaggaagctttactggtacatc 108  Q
    ||||||| |||||| |||||| ||||||| ||| ||||| ||| |||||||||||||  || |||| |||||||||||| |||||||||| ||| ||| |    
T  3362588 agcaaagagcagccaaaattttcttcaagtcatcgaagtctatgcataaggaaagatgtctgagattgatacaaggtgtgggaagctttattggcacaac 3362489  T
Q  109 acctgcagccaaatactgaagcaaaacag 137  Q
    |||||||||||||||||||||||||||||    
T  3362488 acctgcagccaaatactgaagcaaaacag 3362460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 9 - 169
Target Start/End: Complemental strand, 3373576 - 3373416
Alignment:
Q  9 agcaaagggcagccgaaatttccttcaagacattgaagtttatacataaggaaagataactcagatcgatacaaggtgtaggaagctttactggtacatc 108  Q
    ||||||| ||||| ||||||||||||||| ||||||||||||| ||||||||||| | ||  ||   ||||||||||| ||||||||||||||| |||||    
T  3373576 agcaaagagcagctgaaatttccttcaagtcattgaagtttatgcataaggaaagctcacataggctgatacaaggtgcaggaagctttactggcacatc 3373477  T
Q  109 acctgcagccaaatactgaagcaaaacaggagggcgtcactaattgagtatatattgtttt 169  Q
    | ||||||||||||||| || ||||| || ||  ||||||||| | || ||||| ||||||    
T  3373476 atctgcagccaaatactaaaacaaaatagaagaacgtcactaaatcagaatataatgtttt 3373416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 11 - 136
Target Start/End: Original strand, 4334187 - 4334312
Alignment:
Q  11 caaagggcagccgaaatttccttcaagacattgaagtttatacataaggaaagataactcagatcgatacaaggtgtaggaagctttactggtacatcac 110  Q
    ||||| || ||||||||||||| || |  || |||||||||   |||||||||| |||| ||||  |||||||||||||||||||||||||| | | |||    
T  4334187 caaagagcggccgaaatttcctccatgttatcgaagtttatggttaaggaaagaaaacttagattaatacaaggtgtaggaagctttactggcaaaacac 4334286  T
Q  111 ctgcagccaaatactgaagcaaaaca 136  Q
    ||||||||||||||||||||| ||||    
T  4334287 ctgcagccaaatactgaagcataaca 4334312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 59 - 136
Target Start/End: Original strand, 4322347 - 4322424
Alignment:
Q  59 gaaagataactcagatcgatacaaggtgtaggaagctttactggtacatcacctgcagccaaatactgaagcaaaaca 136  Q
    |||||| |||| ||||| |||||||||||||||||||||||||| | | |||||||||||||||||||||||| ||||    
T  4322347 gaaagaaaacttagatcaatacaaggtgtaggaagctttactggcaaaacacctgcagccaaatactgaagcagaaca 4322424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 127
Target Start/End: Complemental strand, 2007327 - 2007223
Alignment:
Q  23 gaaatttccttcaagacattgaagtttatacataaggaaagataactcagatcgatacaaggtgtaggaagctttactggtacatcacctgcagccaaat 122  Q
    ||||||||||| ||| ||| |||||||||||  ||  |||||||  | ||||  |||||||||||||||||||||||||| ||| |||||||||||||||    
T  2007327 gaaatttccttaaagtcatagaagtttatactaaaccaaagatatgttagattaatacaaggtgtaggaagctttactggaacagcacctgcagccaaat 2007228  T
Q  123 actga 127  Q
    |||||    
T  2007227 actga 2007223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 131
Target Start/End: Original strand, 3217770 - 3217892
Alignment:
Q  9 agcaaagggcagccgaaatttccttcaagacattgaagtttatacataaggaaagataactcagatcgatacaaggtgtaggaagctttactggtacatc 108  Q
    ||||||| |||||| ||||||  |||||| |||||||  |||| |||| | ||||| |||| | || |||||||||||| ||||| ||||| || |||||    
T  3217770 agcaaagagcagccaaaatttgtttcaagtcattgaaccttatgcatatgaaaagagaacttaaattgatacaaggtgtcggaagttttaccggcacatc 3217869  T
Q  109 acctgcagccaaatactgaagca 131  Q
    ||||||| |||||||||||||||    
T  3217870 acctgcatccaaatactgaagca 3217892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 71 - 136
Target Start/End: Complemental strand, 3342060 - 3341995
Alignment:
Q  71 agatcgatacaaggtgtaggaagctttactggtacatcacctgcagccaaatactgaagcaaaaca 136  Q
    |||| ||||||||||||||||||||||||||| |||  ||||||||||||||||||| ||||||||    
T  3342060 agattgatacaaggtgtaggaagctttactggcacaatacctgcagccaaatactgaggcaaaaca 3341995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 127
Target Start/End: Complemental strand, 2012810 - 2012706
Alignment:
Q  23 gaaatttccttcaagacattgaagtttatacataaggaaagataactcagatcgatacaaggtgtaggaagctttactggtacatcacctgcagccaaat 122  Q
    |||||||| |||||| | | ||||||||||| |||  |||||||  | ||||  |||||||||||||||||||||||||| ||| |||||||||| ||||    
T  2012810 gaaatttctttcaagtcgtagaagtttatacttaaccaaagatacgttagattaatacaaggtgtaggaagctttactggcacaacacctgcagctaaat 2012711  T
Q  123 actga 127  Q
    |||||    
T  2012710 actga 2012706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 134
Target Start/End: Original strand, 6601008 - 6601132
Alignment:
Q  10 gcaaagggcagccgaaatttccttcaagacattgaagtttatacataaggaaagataactcagatcgatacaaggtgtaggaagctttactggtacatca 109  Q
    |||||| ||||| |||||||||||  |  ||| ||||||||| | || |||||||||||| ||||| || ||||| ||||||||||||||||||||| |     
T  6601008 gcaaagagcagctgaaatttcctttgaatcatagaagtttatgcgtatggaaagataacttagatcaatgcaaggggtaggaagctttactggtacagcc 6601107  T
Q  110 cctgcagccaaatactgaagcaaaa 134  Q
    ||   |||||||||||| |||||||    
T  6601108 cccagagccaaatactggagcaaaa 6601132  T

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Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 129
Target Start/End: Complemental strand, 1793563 - 1793451
Alignment:
Q  17 gcagccgaaatttccttcaagacattgaagtttatacataaggaaagataactcagatcgatacaaggtgtaggaagctttactggtacatcacctgcag 116  Q
    ||||| ||||||||||||||| ||||||||||||| | |||  |||||||  | | || ||||||||||||||||||| ||  ||| ||| |||||||||    
T  1793563 gcagctgaaatttccttcaagtcattgaagtttatgcttaaccaaagatatgttatattgatacaaggtgtaggaagcattgttggcacaacacctgcag 1793464  T
Q  117 ccaaatactgaag 129  Q
      |||||||||||    
T  1793463 ataaatactgaag 1793451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 127
Target Start/End: Complemental strand, 2011313 - 2011209
Alignment:
Q  23 gaaatttccttcaagacattgaagtttatacataaggaaagataactcagatcgatacaaggtgtaggaagctttactggtacatcacctgcagccaaat 122  Q
    ||||||||||||||  ||||||||||||||| |||  | ||| |  | ||||  |||||||||||||||||||||| ||| ||| |||||||||| ||||    
T  2011313 gaaatttccttcaactcattgaagtttatacttaaccatagagacattagattaatacaaggtgtaggaagctttagtggcacaacacctgcagctaaat 2011214  T
Q  123 actga 127  Q
    |||||    
T  2011213 actga 2011209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 123
Target Start/End: Complemental strand, 2020566 - 2020466
Alignment:
Q  23 gaaatttccttcaagacattgaagtttatacataaggaaagataactcagatcgatacaaggtgtaggaagctttactggtacatcacctgcagccaaat 122  Q
    ||||||||||| ||| ||| |||||||||||  ||  |||||||  | ||||  |||||||||||||||||||||||||| ||| |||||||||| ||||    
T  2020566 gaaatttccttaaagtcatagaagtttatactaaaccaaagatatgttagattaatacaaggtgtaggaagctttactggaacaacacctgcagctaaat 2020467  T
Q  123 a 123  Q
    |    
T  2020466 a 2020466  T

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Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 131
Target Start/End: Original strand, 3193366 - 3193437
Alignment:
Q  60 aaagataactcagatcgatacaaggtgtaggaagctttactggtacatcacctgcagccaaatactgaagca 131  Q
    ||||| |||| |||| ||||||| |||| ||||||||||| || |||||||||||| ||||||||| |||||    
T  3193366 aaagaaaacttagattgatacaacgtgtcggaagctttacgggcacatcacctgcatccaaatacttaagca 3193437  T

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Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 131
Target Start/End: Original strand, 3202184 - 3202255
Alignment:
Q  60 aaagataactcagatcgatacaaggtgtaggaagctttactggtacatcacctgcagccaaatactgaagca 131  Q
    ||||| |||| |||| ||||||| |||| ||||||||||| || |||||||||||| ||||||||| |||||    
T  3202184 aaagaaaacttagattgatacaacgtgtcggaagctttacgggcacatcacctgcatccaaatacttaagca 3202255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 131
Target Start/End: Original strand, 3211021 - 3211092
Alignment:
Q  60 aaagataactcagatcgatacaaggtgtaggaagctttactggtacatcacctgcagccaaatactgaagca 131  Q
    ||||| |||| |||| ||||||| |||| ||||||||||| || |||||||||||| ||||||||| |||||    
T  3211021 aaagaaaacttagattgatacaacgtgtcggaagctttacgggcacatcacctgcatccaaatacttaagca 3211092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 140
Target Start/End: Original strand, 2947732 - 2947841
Alignment:
Q  31 cttcaagacattgaagtttatacataaggaaagataactcagatcgatacaaggtgtaggaagctttactggtacatcacctgcagccaaatactgaagc 130  Q
    ||||||| ||||||||||||| || ||| ||| | | || |||| || |||  |||||||||| ||| |||| ||   ||||| ||||||||||| ||||    
T  2947732 cttcaagtcattgaagtttatccacaagcaaatagatcttagattgacacacagtgtaggaagtttttctggcacgatacctgtagccaaatactaaagc 2947831  T
Q  131 aaaacaggag 140  Q
    ||||||||||    
T  2947832 aaaacaggag 2947841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 258
Target Start/End: Complemental strand, 3373334 - 3373302
Alignment:
Q  226 ttaaacaagaattaggttagtcactcctacagt 258  Q
    ||||||||||||||||| |||||||||||||||    
T  3373334 ttaaacaagaattaggtgagtcactcctacagt 3373302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 131
Target Start/End: Original strand, 6591754 - 6591846
Alignment:
Q  39 cattgaagtttatacataaggaaagataactcagatcgatacaaggtgtaggaagctttactggtacatcacctgcagccaaatactgaagca 131  Q
    ||||||||||||| |||| ||||| |||||| ||||| || ||  | |||||||||| |||||| ||| | |||  |||||||||||| ||||    
T  6591754 cattgaagtttatgcatatggaaatataacttagatcaatgcaccgggtaggaagctctactggcacaacccctaaagccaaatactggagca 6591846  T

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Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 9 - 131
Target Start/End: Complemental strand, 20953840 - 20953718
Alignment:
Q  9 agcaaagggcagccgaaatttccttcaagacattgaagtttatacataaggaaagataactcagatcgatacaaggtgtaggaagctttactggtacatc 108  Q
    ||||||| ||||||||||||||||| | |   | ||||||||| |||||||||||||| || ||||  |||||||||||||||||||||||||| | | |    
T  20953840 agcaaagagcagccgaaatttcctttaggttgtcgaagtttatgcataaggaaagatagcttagataaatacaaggtgtaggaagctttactggcaaaac 20953741  T
Q  109 acctgcagccaaatactgaagca 131  Q
    |||||||||||||||||||||||    
T  20953740 acctgcagccaaatactgaagca 20953718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 9 - 137
Target Start/End: Complemental strand, 20935302 - 20935174
Alignment:
Q  9 agcaaagggcagccgaaatttccttcaagacattgaagtttatacataaggaaagataactcagatcgatacaaggtgtaggaagctttactggtacatc 108  Q
    ||||||| ||||||||||||||||||||| ||| ||||||||| |  |||||||||| ||| ||||| |||||||||||||||||||||  ||| | | |    
T  20935302 agcaaagagcagccgaaatttccttcaagtcatcgaagtttatgctcaaggaaagatgacttagatccatacaaggtgtaggaagcttttttggcaaaac 20935203  T
Q  109 acctgcagccaaatactgaagcaaaacag 137  Q
    |||||||| || |||||||||| ||||||    
T  20935202 acctgcagtcagatactgaagcgaaacag 20935174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 9 - 137
Target Start/End: Complemental strand, 20924301 - 20924173
Alignment:
Q  9 agcaaagggcagccgaaatttccttcaagacattgaagtttatacataaggaaagataactcagatcgatacaaggtgtaggaagctttactggtacatc 108  Q
    |||||||  |||||||||||||| ||||| | ||||||||||  |||| ||||||| |  | ||||  |||||| ||||||||||||||||||| ||  |    
T  20924301 agcaaagaacagccgaaatttccgtcaagtcgttgaagtttaggcatatggaaagaaatgttagattaatacaaagtgtaggaagctttactggcaccac 20924202  T
Q  109 acctgcagccaaatactgaagcaaaacag 137  Q
    |||||||||||||||||||||||||||||    
T  20924201 acctgcagccaaatactgaagcaaaacag 20924173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 131
Target Start/End: Complemental strand, 39274848 - 39274720
Alignment:
Q  9 agcaaagggcagccgaaatttccttcaagacattgaagtttatacataaggaaagataactcagatcgatacaaggtgtaggaagctttactggtac--- 105  Q
    ||||||| |||||| ||| |||||||| | |||||||  ||||||||| | ||||| |||| | || || | |||  ||||||||||||||||| ||       
T  39274848 agcaaagagcagccaaaacttccttcatgtcattgaaccttatacatatgaaaagaaaacttaaattgacaaaagtagtaggaagctttactggcactgg 39274749  T
Q  106 ---atcacctgcagccaaatactgaagca 131  Q
       ||||||||||||||||||||||||||    
T  39274748 cacatcacctgcagccaaatactgaagca 39274720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 17 - 137
Target Start/End: Complemental strand, 21238343 - 21238223
Alignment:
Q  17 gcagccgaaatttccttcaagacattgaagtttatacataaggaaagataactcagatcgatacaaggtgtaggaagctttactggtacatcacctgcag 116  Q
    |||||||| |||||||||||| |||||||||||||   |||  ||||||  || ||||  |||||||||||||||||||||||||| ||  |||||||||    
T  21238343 gcagccgagatttccttcaagtcattgaagtttatgtttaacaaaagatggcttagatgaatacaaggtgtaggaagctttactggaacgacacctgcag 21238244  T
Q  117 ccaaatactgaagcaaaacag 137  Q
    ||||||||||||||| |||||    
T  21238243 ccaaatactgaagcagaacag 21238223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 137
Target Start/End: Complemental strand, 17970585 - 17970509
Alignment:
Q  61 aagataactcagatcgatacaaggtgtaggaagctttactggtacatcacctgcagccaaatactgaagcaaaacag 137  Q
    |||| |||| ||||| |||  |||||| ||||||| |||||| |||  ||||||||||||||||| |||||||||||    
T  17970585 aagagaactaagatcaataataggtgtcggaagctctactggaacaatacctgcagccaaatactaaagcaaaacag 17970509  T

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