View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13091_high_4 (Length: 369)
Name: NF13091_high_4
Description: NF13091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13091_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 12 - 352
Target Start/End: Original strand, 4273948 - 4274288
Alignment:
| Q |
12 |
atgaaccaaaacaagatgatatcattagataagcctcacctgattttcaggaaccaacaagacttggcaatacacttcatcactcccttcctcagcctac |
111 |
Q |
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| T |
4273948 |
atgaaccaaaacaagatgatatcattagataagcctcacctgattttcaggaaccaacaagacttggcaatacacttcatcactcccttcctcagcctac |
4274047 |
T |
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| Q |
112 |
acagaaaaagcacaagcatttcaagaaaaatccaaaatccaaagttccctcaatacatgtctctccaaaagaacaataaactaggaaaagggtattctat |
211 |
Q |
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| T |
4274048 |
acagaaaaagcacaagcatttcaagaaaaatccaaaatccaaagttccctcaatacatgtctctccaaaagaacaataaactaggaaaagggtattctct |
4274147 |
T |
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| Q |
212 |
ccaccaatcaaagcacattatggttcattcaaacaataaagggggaaaacaaaaggtgtgactcataaattgttaaacttggaaagaaatcaataaaccc |
311 |
Q |
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| T |
4274148 |
ccaccaatcaaagcacattatggttcattcaaacaataaagggggaaaacaaaaagtgtgactcataaattgttaaacttggaaagaaatcaataaaccc |
4274247 |
T |
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| Q |
312 |
ttttctcataatcaattttcccaactacaagactaaacaaa |
352 |
Q |
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| T |
4274248 |
ttttctcataatcaattttcccaactacaagactaaacaaa |
4274288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 114
Target Start/End: Complemental strand, 34797190 - 34797132
Alignment:
| Q |
56 |
tttcaggaaccaacaagacttggcaatacacttcatcactcccttcctcagcctacaca |
114 |
Q |
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| T |
34797190 |
tttcaggaaccaacaacacctgacaatacacctcatcgttcccttcctcagcctgcaca |
34797132 |
T |
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