View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13091_high_5 (Length: 337)

Name: NF13091_high_5
Description: NF13091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13091_high_5
NF13091_high_5
[»] chr7 (16 HSPs)
chr7 (14-286)||(25176304-25176575)
chr7 (190-258)||(43492246-43492314)
chr7 (191-250)||(39316345-39316404)
chr7 (162-232)||(27338228-27338298)
chr7 (198-263)||(5482447-5482511)
chr7 (165-258)||(5907794-5907885)
chr7 (197-258)||(19619993-19620054)
chr7 (161-250)||(26871737-26871825)
chr7 (165-250)||(34299795-34299880)
chr7 (190-250)||(38362249-38362309)
chr7 (196-258)||(24299175-24299237)
chr7 (190-248)||(46716173-46716231)
chr7 (194-251)||(24610889-24610946)
chr7 (165-201)||(27076232-27076268)
chr7 (165-201)||(27202033-27202069)
chr7 (166-258)||(44452086-44452176)
[»] chr4 (21 HSPs)
chr4 (14-128)||(4781056-4781170)
chr4 (192-250)||(49951742-49951800)
chr4 (167-258)||(23136551-23136642)
chr4 (167-238)||(41462020-41462091)
chr4 (169-252)||(53622278-53622359)
chr4 (169-258)||(53261531-53261620)
chr4 (192-260)||(2818355-2818423)
chr4 (158-250)||(52650742-52650834)
chr4 (165-232)||(24546778-24546844)
chr4 (158-260)||(8297833-8297935)
chr4 (190-258)||(17970804-17970873)
chr4 (190-258)||(21241121-21241189)
chr4 (191-250)||(27963166-27963226)
chr4 (191-251)||(49622997-49623057)
chr4 (194-261)||(36876098-36876165)
chr4 (196-250)||(45743315-45743369)
chr4 (192-250)||(50617492-50617550)
chr4 (163-232)||(24175468-24175537)
chr4 (165-250)||(47937833-47937917)
chr4 (160-224)||(32175397-32175461)
chr4 (217-261)||(53919889-53919933)
[»] chr8 (14 HSPs)
chr8 (167-258)||(1876526-1876617)
chr8 (159-258)||(44220754-44220851)
chr8 (171-251)||(2376779-2376859)
chr8 (191-258)||(11533227-11533294)
chr8 (165-252)||(31264966-31265053)
chr8 (190-258)||(12002261-12002329)
chr8 (165-225)||(24869383-24869443)
chr8 (192-252)||(30158112-30158172)
chr8 (165-204)||(40298850-40298889)
chr8 (192-250)||(18842307-18842365)
chr8 (166-232)||(25279899-25279965)
chr8 (165-238)||(27801290-27801363)
chr8 (197-250)||(37449541-37449594)
chr8 (190-258)||(14016911-14016979)
[»] chr1 (21 HSPs)
chr1 (167-252)||(33791789-33791874)
chr1 (167-261)||(39973863-39973957)
chr1 (156-250)||(40053253-40053347)
chr1 (155-252)||(35543453-35543550)
chr1 (165-258)||(49478781-49478875)
chr1 (165-261)||(3047836-3047932)
chr1 (206-260)||(1656446-1656500)
chr1 (152-258)||(48947160-48947266)
chr1 (191-248)||(37188576-37188633)
chr1 (190-250)||(42573821-42573881)
chr1 (165-232)||(5423816-5423883)
chr1 (165-252)||(34861262-34861349)
chr1 (165-258)||(16113888-16113981)
chr1 (165-261)||(31042970-31043066)
chr1 (165-261)||(33744176-33744272)
chr1 (207-250)||(290602-290645)
chr1 (206-257)||(51904614-51904665)
chr1 (192-250)||(27934781-27934839)
chr1 (191-261)||(48811928-48811998)
chr1 (165-250)||(48938-49023)
chr1 (165-250)||(31807832-31807917)
[»] chr3 (13 HSPs)
chr3 (169-250)||(48551013-48551094)
chr3 (160-250)||(45757893-45757983)
chr3 (196-252)||(12140145-12140201)
chr3 (167-260)||(24313522-24313615)
chr3 (191-251)||(28691975-28692035)
chr3 (159-252)||(54290827-54290920)
chr3 (191-259)||(25317800-25317868)
chr3 (162-252)||(43803936-43804025)
chr3 (192-261)||(37388403-37388472)
chr3 (196-233)||(45584395-45584432)
chr3 (166-250)||(11465677-11465761)
chr3 (163-227)||(50604020-50604084)
chr3 (194-250)||(54911199-54911255)
[»] chr5 (13 HSPs)
chr5 (196-260)||(38594973-38595037)
chr5 (164-263)||(10228288-10228385)
chr5 (165-238)||(8208148-8208221)
chr5 (194-260)||(14309129-14309195)
chr5 (158-251)||(34032141-34032234)
chr5 (191-258)||(4695067-4695134)
chr5 (209-263)||(27325863-27325917)
chr5 (164-238)||(30501204-30501278)
chr5 (164-238)||(30541547-30541621)
chr5 (197-250)||(21259470-21259523)
chr5 (166-210)||(10051700-10051744)
chr5 (196-252)||(17774332-17774388)
chr5 (191-235)||(39335665-39335709)
[»] chr2 (21 HSPs)
chr2 (191-250)||(4655013-4655072)
chr2 (190-257)||(24389668-24389735)
chr2 (169-261)||(6334713-6334805)
chr2 (196-260)||(9049192-9049256)
chr2 (160-249)||(21277517-21277606)
chr2 (167-251)||(30869613-30869695)
chr2 (191-252)||(33634848-33634909)
chr2 (166-252)||(6411424-6411510)
chr2 (192-258)||(12762915-12762981)
chr2 (190-252)||(12848522-12848584)
chr2 (190-258)||(3074074-3074143)
chr2 (165-261)||(13538364-13538461)
chr2 (189-258)||(30822764-30822833)
chr2 (165-258)||(565736-565830)
chr2 (210-250)||(42342541-42342581)
chr2 (165-252)||(32859754-32859841)
chr2 (216-258)||(431678-431720)
chr2 (171-261)||(8964368-8964457)
chr2 (192-250)||(33454964-33455022)
chr2 (160-261)||(2825997-2826098)
chr2 (189-250)||(6083954-6084015)
[»] chr6 (6 HSPs)
chr6 (165-251)||(13445782-13445868)
chr6 (164-252)||(33970376-33970464)
chr6 (190-232)||(1840977-1841019)
chr6 (168-250)||(3753147-3753229)
chr6 (217-258)||(29716809-29716850)
chr6 (165-261)||(6586458-6586553)
[»] scaffold0010 (1 HSPs)
scaffold0010 (190-250)||(26695-26755)
[»] scaffold0053 (1 HSPs)
scaffold0053 (190-250)||(5756-5816)


Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 14 - 286
Target Start/End: Complemental strand, 25176575 - 25176304
Alignment:
Q  14 ttcttcctgatgattttgtgtctggacttcaagtacgtaaaggaaatgactggatcactgttaagcctgtccctaatgcttttatcatcaacattggtga 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25176575 ttcttcctgatgattttgtgtctggacttcaagtacgtaaaggaaatgactggatcactgttaagcctgtccctaatgcttttatcatcaacattggtga 25176476  T
Q  114 ccaaattcaggtcctacctctttctacaatgttagatatatatattttaaaggtcttgttaacgagtgtccctatagcactctttaagcatgttaaatta 213  Q
    ||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||| ||||||||  ||||||||||| ||||||||||||    
T  25176475 ccaaattcaggtcctacctctttctacaatg-tatagatatatattttaaaggtcttgttaacgaatgtccctagggcactctttaaacatgttaaatta 25176377  T
Q  214 gataattattcttttaaaatgtcaaaattttcaatttccgatgcattggtccatattttgattttggtaaatg 286  Q
    |||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||    
T  25176376 gataattattcttttaaaatgtcaaatttttcaatttctgatgcactggtccatattttgattttggtaaatg 25176304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 190 - 258
Target Start/End: Complemental strand, 43492314 - 43492246
Alignment:
Q  190 gcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgca 258  Q
    |||||||||||||||  |||||||  ||||||||||||  |||||||||||||| |||||||| |||||    
T  43492314 gcactctttaagcattctaaattaagtaattattctttagaaatgtcaaaatttacaatttccaatgca 43492246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 250
Target Start/End: Complemental strand, 39316404 - 39316345
Alignment:
Q  191 cactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 250  Q
    |||||||||||||| ||||||||  |||||||||||  | ||||||||||||||||||||    
T  39316404 cactctttaagcatattaaattaagtaattattcttcaataatgtcaaaattttcaattt 39316345  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 232
Target Start/End: Original strand, 27338228 - 27338298
Alignment:
Q  162 aaaggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaa 232  Q
    ||||||||||| ||||||||| | |   |||||||||||||||| ||||||||| ||||||||||| ||||    
T  27338228 aaaggtcttgtgaacgagtgttcttggggcactctttaagcatgctaaattagaaaattattctttaaaaa 27338298  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 198 - 263
Target Start/End: Complemental strand, 5482511 - 5482447
Alignment:
Q  198 taagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgcattggt 263  Q
    |||| ||| |||||||  |||||||||||||||||||||||| ||||| |||||| ||||||||||    
T  5482511 taagtatgctaaattaagtaattattcttttaaaatgtcaaagttttc-atttccaatgcattggt 5482447  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 165 - 258
Target Start/End: Original strand, 5907794 - 5907885
Alignment:
Q  165 ggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgca 258  Q
    ||||||||||||||||| |||||  |||||||||||||||  |||||||  |||||||| |||| |||||||||| ||||  |||||| |||||    
T  5907794 ggtcttgttaacgagtg-ccctagggcactctttaagcattctaaattaagtaattatt-tttttaaatgtcaaacttttttatttccaatgca 5907885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 197 - 258
Target Start/End: Original strand, 19619993 - 19620054
Alignment:
Q  197 ttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgca 258  Q
    ||||||||| |||||||   ||||||||||| ||||||||||| |||||||||||| |||||    
T  19619993 ttaagcatgctaaattaagaaattattctttaaaaatgtcaaagttttcaatttccaatgca 19620054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 161 - 250
Target Start/End: Original strand, 26871737 - 26871825
Alignment:
Q  161 taaaggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 250  Q
    ||||||| |||||||||||||||||   |||||| |||||||||| ||||| |  |||||||||||||||||| | ||| |||| |||||    
T  26871737 taaaggtattgttaacgagtgtcccgg-agcactatttaagcatgctaaataaagtaattattcttttaaaatttaaaagttttgaattt 26871825  T

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Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 165 - 250
Target Start/End: Complemental strand, 34299880 - 34299795
Alignment:
Q  165 ggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 250  Q
    ||||||||||||||||| |||    ||||| |||||||||| || ||||   ||||||||||| ||||||||||| ||||||||||    
T  34299880 ggtcttgttaacgagtgcccccggggcactttttaagcatgctagattaagcaattattctttaaaaatgtcaaagttttcaattt 34299795  T

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Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 250
Target Start/End: Original strand, 38362249 - 38362309
Alignment:
Q  190 gcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 250  Q
    ||||| ||||||||| ||||||||||||||||||| || ||||| | ||| ||||||||||    
T  38362249 gcactttttaagcattttaaattagataattattcattaaaaatattaaagttttcaattt 38362309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 258
Target Start/End: Complemental strand, 24299237 - 24299175
Alignment:
Q  196 tttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgca 258  Q
    ||||||||||||||||||   |||||||| || ||||||||||| |||| ||||||| |||||    
T  24299237 tttaagcatgttaaattaagaaattattccttaaaaatgtcaaattttttaatttccaatgca 24299175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 248
Target Start/End: Original strand, 46716173 - 46716231
Alignment:
Q  190 gcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaat 248  Q
    ||||||||||| |||  ||||||| ||||||||||||| ||||| ||||| ||||||||    
T  46716173 gcactctttaaccattctaaattaaataattattctttaaaaatatcaaagttttcaat 46716231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 251
Target Start/End: Complemental strand, 24610946 - 24610889
Alignment:
Q  194 tctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttc 251  Q
    ||||||| |||| ||||||| | ||||||||||||||||||| ||| |||| ||||||    
T  24610946 tctttaaacatgctaaattaaacaattattcttttaaaatgttaaagttttgaatttc 24610889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 201
Target Start/End: Complemental strand, 27076268 - 27076232
Alignment:
Q  165 ggtcttgttaacgagtgtccctatagcactctttaag 201  Q
    |||||||||||||||||||| || |||||||||||||    
T  27076268 ggtcttgttaacgagtgtccttagagcactctttaag 27076232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 201
Target Start/End: Original strand, 27202033 - 27202069
Alignment:
Q  165 ggtcttgttaacgagtgtccctatagcactctttaag 201  Q
    |||||||||||||||||||| || |||||||||||||    
T  27202033 ggtcttgttaacgagtgtccttagagcactctttaag 27202069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 258
Target Start/End: Complemental strand, 44452176 - 44452086
Alignment:
Q  166 gtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgca 258  Q
    |||||||||||||||| ||| | | |||||||||| |||  |||||||  |||||||| ||| ||||| |||||| ||||||||||| |||||    
T  44452176 gtcttgttaacgagtgcccc-aga-cactctttaaacattctaaattaagtaattattatttaaaaatatcaaaagtttcaatttccaatgca 44452086  T

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Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 14 - 128
Target Start/End: Original strand, 4781056 - 4781170
Alignment:
Q  14 ttcttcctgatgattttgtgtctggacttcaagtacgtaaaggaaatgactggatcactgttaagcctgtccctaatgcttttatcatcaacattggtga 113  Q
    ||||||||||||||| ||| ||||||||||||||||||| |||| | || |||||||| |||||||||||||| |||||||| |||||||| ||||||||    
T  4781056 ttcttcctgatgattatgtatctggacttcaagtacgtagaggagaagattggatcacagttaagcctgtcccaaatgctttcatcatcaatattggtga 4781155  T
Q  114 ccaaattcaggtcct 128  Q
    |||||||||||||||    
T  4781156 ccaaattcaggtcct 4781170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 250
Target Start/End: Complemental strand, 49951800 - 49951742
Alignment:
Q  192 actctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 250  Q
    |||||||||||||| |||||||  |||||||||||||||||||||||| ||||||||||    
T  49951800 actctttaagcatgctaaattaagtaattattcttttaaaatgtcaaagttttcaattt 49951742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 167 - 258
Target Start/End: Complemental strand, 23136642 - 23136551
Alignment:
Q  167 tcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgca 258  Q
    ||||||||||||||||| |   ||||||| ||||| || ||||||||  |||||||||||||||||| | ||| |||||||||||| |||||    
T  23136642 tcttgttaacgagtgtctccgaagcactccttaagtatattaaattaagtaattattcttttaaaatttaaaagttttcaatttccaatgca 23136551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 167 - 238
Target Start/End: Original strand, 41462020 - 41462091
Alignment:
Q  167 tcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaa 238  Q
    ||||||||||||||||||||  |||||||||||||||| ||| |||   ||||||||||||||||| |||||    
T  41462020 tcttgttaacgagtgtccctggagcactctttaagcattttatatttagtaattattcttttaaaaagtcaa 41462091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 169 - 252
Target Start/End: Original strand, 53622278 - 53622359
Alignment:
Q  169 ttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttcc 252  Q
    ||||||||||||| ||| || ||||||||||| ||| ||||||||  ||||| || ||||||||||||||||||||||||||||    
T  53622278 ttgttaacgagtgcccc-at-gcactctttaaacatcttaaattaagtaattttttttttaaaatgtcaaaattttcaatttcc 53622359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 258
Target Start/End: Original strand, 53261531 - 53261620
Alignment:
Q  169 ttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgca 258  Q
    ||||||||||||| ||| |   ||||||||||||||| |||||||  |||||||||||| ||||| | ||| |||||||||||| |||||    
T  53261531 ttgttaacgagtgcccccaggacactctttaagcatgctaaattaagtaattattctttaaaaatttaaaagttttcaatttccaatgca 53261620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 192 - 260
Target Start/End: Original strand, 2818355 - 2818423
Alignment:
Q  192 actctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgcatt 260  Q
    ||||||||||||| ||||||||   |||||||||||||||| |||||||  |||||||||| |||||||    
T  2818355 actctttaagcattttaaattaagaaattattcttttaaaaggtcaaaaagttcaatttccaatgcatt 2818423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 158 - 250
Target Start/End: Complemental strand, 52650834 - 52650742
Alignment:
Q  158 ttttaaaggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 250  Q
    |||||| ||||||||||||||||| | |   | |||||||||| |||| |||||||   |||||||||||  |||||||||||||||||||||    
T  52650834 ttttaagggtcttgttaacgagtgcctccggaacactctttaaacatgctaaattaagaaattattctttacaaatgtcaaaattttcaattt 52650742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 232
Target Start/End: Complemental strand, 24546844 - 24546778
Alignment:
Q  165 ggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaa 232  Q
    ||||||||||||||||| | ||| | ||||||||||||||||||||||||  ||||||||||| ||||    
T  24546844 ggtcttgttaacgagtg-ctctagaacactctttaagcatgttaaattaggaaattattctttaaaaa 24546778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 260
Target Start/End: Original strand, 8297833 - 8297935
Alignment:
Q  158 ttttaaaggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgc 257  Q
    |||||| ||||||||||||||||| |||    |||||||||||||||   |||||   |||||||||||||||||||||||   || |||||||| ||||    
T  8297833 ttttaagggtcttgttaacgagtgcccccggggcactctttaagcatcccaaatttagtaattattcttttaaaatgtcaactgttacaatttccaatgc 8297932  T
Q  258 att 260  Q
    |||    
T  8297933 att 8297935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 190 - 258
Target Start/End: Original strand, 17970804 - 17970873
Alignment:
Q  190 gcactctttaagcatgttaaattagataattattcttttaaaatgtcaaa-attttcaatttccgatgca 258  Q
    |||||||||||||||| |||||||  ||||||||| |||||||| |||||  |||||||||||| |||||    
T  17970804 gcactctttaagcatgataaattaagtaattattcatttaaaatatcaaagtttttcaatttccaatgca 17970873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 258
Target Start/End: Original strand, 21241121 - 21241189
Alignment:
Q  190 gcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgca 258  Q
    ||||||||||| ||||||||||||   ||| ||| ||| ||||| |||||||||||||||||| |||||    
T  21241121 gcactctttaaacatgttaaattaagaaatgattttttaaaaatatcaaaattttcaatttccaatgca 21241189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 250
Target Start/End: Complemental strand, 27963226 - 27963166
Alignment:
Q  191 cactctttaagcatgttaaa-ttagataattattcttttaaaatgtcaaaattttcaattt 250  Q
    |||||||||  ||||||||| ||| ||||||||||||||||||| | ||||||||||||||    
T  27963226 cactctttacacatgttaaaattaaataattattcttttaaaatattaaaattttcaattt 27963166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 251
Target Start/End: Complemental strand, 49623057 - 49622997
Alignment:
Q  191 cactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttc 251  Q
    |||| ||||||||| ||||||||  |||||||||  | |||||||||||||||||||||||    
T  49623057 cactatttaagcattttaaattaagtaattattccataaaaatgtcaaaattttcaatttc 49622997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 194 - 261
Target Start/End: Complemental strand, 36876165 - 36876098
Alignment:
Q  194 tctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgcattg 261  Q
    |||||||||||| |||||||  ||| |||||||||||||||| ||  |||||||||||| || |||||    
T  36876165 tctttaagcatgctaaattaagtaactattcttttaaaatgtaaatgttttcaatttccaatacattg 36876098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 250
Target Start/End: Original strand, 45743315 - 45743369
Alignment:
Q  196 tttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 250  Q
    |||||| |||||||||||   ||||||||||| ||||||||||| ||||||||||    
T  45743315 tttaagtatgttaaattaagaaattattctttaaaaatgtcaaagttttcaattt 45743369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 250
Target Start/End: Original strand, 50617492 - 50617550
Alignment:
Q  192 actctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 250  Q
    ||||||||| |||  |||||||  |||||||| ||||||||||||||| ||||||||||    
T  50617492 actctttaaacattataaattaagtaattatttttttaaaatgtcaaacttttcaattt 50617550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 232
Target Start/End: Complemental strand, 24175537 - 24175468
Alignment:
Q  163 aaggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaa 232  Q
    |||||||||||||||||||||| ||   ||||||||||||||  ||||||   ||| |||||||||||||    
T  24175537 aaggtcttgttaacgagtgtccttaggacactctttaagcatcctaaatttagtaaatattcttttaaaa 24175468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 250
Target Start/End: Original strand, 47937833 - 47937917
Alignment:
Q  165 ggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 250  Q
    |||||||||||||||||| ||   || ||||||||| |||  |||||||  |||||||||||| |||| |||||| ||||||||||    
T  47937833 ggtcttgttaacgagtgtgccgg-agtactctttaaacatactaaattatgtaattattctttaaaaaagtcaaagttttcaattt 47937917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 224
Target Start/End: Original strand, 32175397 - 32175461
Alignment:
Q  160 ttaaaggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattc 224  Q
    |||||||||||||||| |||||||| |   | ||||||||||||| ||||||||  |||||||||    
T  32175397 ttaaaggtcttgttaaagagtgtccatgaggtactctttaagcattttaaattaagtaattattc 32175461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 261
Target Start/End: Original strand, 53919889 - 53919933
Alignment:
Q  217 aattattcttttaaaatgtcaaaattttcaatttccgatgcattg 261  Q
    ||||||||| | |||| ||||||| ||||||||||||||||||||    
T  53919889 aattattctataaaaaagtcaaaaatttcaatttccgatgcattg 53919933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 167 - 258
Target Start/End: Complemental strand, 1876617 - 1876526
Alignment:
Q  167 tcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgca 258  Q
    ||||||||||||||| |||    |||||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||| |||||    
T  1876617 tcttgttaacgagtgcccccggggcactctttaagcatgctaaattaagtaattattcttttaaaatgtcaaaattttcaatttccaatgca 1876526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 159 - 258
Target Start/End: Complemental strand, 44220851 - 44220754
Alignment:
Q  159 tttaaaggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgca 258  Q
    ||||||| |||||||||||||||||||   |||||| |  |||||||||||||||  |||||||||||||||||||||||| |||||||||||| |||||    
T  44220851 tttaaagttcttgttaacgagtgtccccggagcactat--aagcatgttaaattaagtaattattcttttaaaatgtcaaagttttcaatttccaatgca 44220754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 171 - 251
Target Start/End: Complemental strand, 2376859 - 2376779
Alignment:
Q  171 gttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttc 251  Q
    ||||||||||||  ||| |  ||||||||||||| |||||||| ||||||||||||| ||||| ||||| |||||||||||    
T  2376859 gttaacgagtgtttctagaatactctttaagcattttaaattaaataattattctttaaaaatatcaaagttttcaatttc 2376779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 258
Target Start/End: Original strand, 11533227 - 11533294
Alignment:
Q  191 cactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgca 258  Q
    |||||||||| ||||||||||||   ||||||||||| ||||||||||| |||||||||||| |||||    
T  11533227 cactctttaaacatgttaaattaataaattattctttaaaaatgtcaaagttttcaatttccaatgca 11533294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 165 - 252
Target Start/End: Original strand, 31264966 - 31265053
Alignment:
Q  165 ggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttcc 252  Q
    ||||||||||||||||| |||| | |||||||||||||||| ||||||||  | ||||||||| |||| ||||||   ||||||||||    
T  31264966 ggtcttgttaacgagtgcccctgtggcactctttaagcatgctaaattaggaagttattctttaaaaaagtcaaacaattcaatttcc 31265053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 258
Target Start/End: Original strand, 12002261 - 12002329
Alignment:
Q  190 gcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgca 258  Q
    |||||||||||| ||  |||||||  |||||||||||| ||||||| ||| |||||||||||| |||||    
T  12002261 gcactctttaagtatactaaattaagtaattattctttaaaaatgtaaaagttttcaatttccaatgca 12002329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 24869383 - 24869443
Alignment:
Q  165 ggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattct 225  Q
    ||||||||||||||||| |||| | ||||||||||| |||| |||||||  ||||||||||    
T  24869383 ggtcttgttaacgagtgcccctgtggcactctttaaacatgctaaattaagtaattattct 24869443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 252
Target Start/End: Complemental strand, 30158172 - 30158112
Alignment:
Q  192 actctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttcc 252  Q
    |||||||||||||  ||||||| ||||||||||||| ||||||| ||| |||| |||||||    
T  30158172 actctttaagcattctaaattaaataattattctttgaaaatgtaaaagtttttaatttcc 30158112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 204
Target Start/End: Original strand, 40298850 - 40298889
Alignment:
Q  165 ggtcttgttaacgagtgtccctatagcactctttaagcat 204  Q
    ||||||||||||||||||||||||  ||||||||||||||    
T  40298850 ggtcttgttaacgagtgtccctatgacactctttaagcat 40298889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 250
Target Start/End: Complemental strand, 18842365 - 18842307
Alignment:
Q  192 actctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 250  Q
    ||||||||| ||| ||||||||  |||||||||||| ||||||||||| |||| |||||    
T  18842365 actctttaaccattttaaattaagtaattattctttaaaaatgtcaaagtttttaattt 18842307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 232
Target Start/End: Original strand, 25279899 - 25279965
Alignment:
Q  166 gtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaa 232  Q
    |||||||||||||||| |||||   ||||||||||||||| ||||||||  | ||||||||| ||||    
T  25279899 gtcttgttaacgagtgcccctacgacactctttaagcatgctaaattaggaagttattctttaaaaa 25279965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 238
Target Start/End: Complemental strand, 27801363 - 27801290
Alignment:
Q  165 ggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaa 238  Q
    ||||||||||||||||| ||| ||  |||||||||| |||  ||||||   ||||||||||||||||| |||||    
T  27801363 ggtcttgttaacgagtgcccccatgacactctttaatcattctaaatttagtaattattcttttaaaaagtcaa 27801290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 250
Target Start/End: Original strand, 37449541 - 37449594
Alignment:
Q  197 ttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 250  Q
    |||| ||| ||||||||  |||||||| ||||||||||||||| ||||||||||    
T  37449541 ttaaacattttaaattaagtaattatttttttaaaatgtcaaacttttcaattt 37449594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 258
Target Start/End: Complemental strand, 14016979 - 14016911
Alignment:
Q  190 gcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgca 258  Q
    |||||||||||||||| ||||| |  |||| ||||||| ||||| | ||| |||||||||||| |||||    
T  14016979 gcactctttaagcatgctaaataaagtaatgattctttcaaaatttaaaagttttcaatttccaatgca 14016911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 6e-22; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 167 - 252
Target Start/End: Complemental strand, 33791874 - 33791789
Alignment:
Q  167 tcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttcc 252  Q
    ||||||||||||||||||||| |  |||||||||| ||| |||||||  |||||||||||||||||||||||| ||||||||||||    
T  33791874 tcttgttaacgagtgtccctagactactctttaagtatgctaaattaagtaattattcttttaaaatgtcaaatttttcaatttcc 33791789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 167 - 261
Target Start/End: Original strand, 39973863 - 39973957
Alignment:
Q  167 tcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgcattg 261  Q
    ||||||||||||||||| |    |||||||||||||||| |||||||  |||||||||||||||||||| ||| |||||||||| | ||||||||    
T  39973863 tcttgttaacgagtgtctccggggcactctttaagcatgctaaattaagtaattattcttttaaaatgttaaagttttcaattttcaatgcattg 39973957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 156 - 250
Target Start/End: Original strand, 40053253 - 40053347
Alignment:
Q  156 tattttaaaggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 250  Q
    |||||||  ||||||||||||||||||| |||  ||||| |||||||||  |||||||| ||||| |||||| ||||||||||| ||||||||||    
T  40053253 tattttatgggtcttgttaacgagtgtctctagtgcactttttaagcattctaaattaggtaattgttctttaaaaatgtcaaagttttcaattt 40053347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 155 - 252
Target Start/End: Complemental strand, 35543550 - 35543453
Alignment:
Q  155 atattttaaaggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttcc 252  Q
    ||||| ||||||||||||||||||||| |  |  |||||| |||||||||| |||||||  |||||||| ||||||||| ||||| ||||||||||||    
T  35543550 atattgtaaaggtcttgttaacgagtgcctttggagcactatttaagcatgctaaattaagtaattatttttttaaaatatcaaagttttcaatttcc 35543453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 165 - 258
Target Start/End: Original strand, 49478781 - 49478875
Alignment:
Q  165 ggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaa-ttttcaatttccgatgca 258  Q
    ||||||||||||||||||| ||  || |||||||||||||||| | |||  |||||||| |||| ||||||||||| |||||||||||| |||||    
T  49478781 ggtcttgttaacgagtgtctctggagtactctttaagcatgttgagttaagtaattattttttttaaatgtcaaaagttttcaatttccaatgca 49478875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 165 - 261
Target Start/End: Original strand, 3047836 - 3047932
Alignment:
Q  165 ggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgcattg 261  Q
    ||||||||||| ||||| |||    |||||||||||||||| |||||||  ||||| |||||| ||||||||||| ||||| |||||| ||||||||    
T  3047836 ggtcttgttaaagagtgcccccggggcactctttaagcatgctaaattaagtaattgttctttaaaaatgtcaaatttttcgatttccaatgcattg 3047932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 206 - 260
Target Start/End: Original strand, 1656446 - 1656500
Alignment:
Q  206 ttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgcatt 260  Q
    |||||||| ||||||||| ||| |||||||||||||||||||||||| |||||||    
T  1656446 ttaaattaaataattattttttaaaaatgtcaaaattttcaatttccaatgcatt 1656500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 152 - 258
Target Start/End: Original strand, 48947160 - 48947266
Alignment:
Q  152 tatatattttaaaggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttc 251  Q
    |||||||| ||  ||| ||||||||||||| ||||   ||| |||||||||||  |||||||  |||||||| ||| ||||||||||| |||||||||||    
T  48947160 tatatattatatgggttttgttaacgagtgcccctggggcattctttaagcatactaaattaagtaattattttttaaaaatgtcaaagttttcaatttc 48947259  T
Q  252 cgatgca 258  Q
    | |||||    
T  48947260 caatgca 48947266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 248
Target Start/End: Complemental strand, 37188633 - 37188576
Alignment:
Q  191 cactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaat 248  Q
    |||||||||||||| |||||||| ||||||||||  | ||||||||||||||||||||    
T  37188633 cactctttaagcattttaaattaaataattattcaataaaaatgtcaaaattttcaat 37188576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 42573881 - 42573821
Alignment:
Q  190 gcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 250  Q
    |||||||||||||||| |||||||  |||||||||||||||||||| ||  ||||||||||    
T  42573881 gcactctttaagcatgctaaattaagtaattattcttttaaaatgttaaggttttcaattt 42573821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 232
Target Start/End: Complemental strand, 5423883 - 5423816
Alignment:
Q  165 ggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaa 232  Q
    |||||||||||||| |||  ||| |||| ||||||||||| |||||||||| ||||||||||| ||||    
T  5423883 ggtcttgttaacgaatgttactagagcattctttaagcattttaaattagaaaattattctttaaaaa 5423816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 252
Target Start/End: Complemental strand, 34861349 - 34861262
Alignment:
Q  165 ggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttcc 252  Q
    ||||||||||||||||| |||    |||||||||||||||  |||||||  |||||||| ||| |||||||||||  |||||||||||    
T  34861349 ggtcttgttaacgagtgccccgggggcactctttaagcattctaaattaagtaattattttttaaaaatgtcaaacatttcaatttcc 34861262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 165 - 258
Target Start/End: Original strand, 16113888 - 16113981
Alignment:
Q  165 ggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgca 258  Q
    ||||||||||||||||| | |    |||||||||||||||  || ||||  |||||||| ||| ||||||||||| |||||||||||| |||||    
T  16113888 ggtcttgttaacgagtgcctccggggcactctttaagcatactatattaagtaattattttttcaaaatgtcaaagttttcaatttccaatgca 16113981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 261
Target Start/End: Original strand, 31042970 - 31043066
Alignment:
Q  165 ggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgcattg 261  Q
    |||||||||||||| ||||||     || |||||||||||  |||||||  |||||||| ||| ||||||||||| |||||||||| | ||||||||    
T  31042970 ggtcttgttaacgaatgtccccggcacagtctttaagcattctaaattaagtaattattttttaaaaatgtcaaagttttcaattttcaatgcattg 31043066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 261
Target Start/End: Complemental strand, 33744272 - 33744176
Alignment:
Q  165 ggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgcattg 261  Q
    ||||||||| | ||||| ||||  |||||||||||||||| ||||| ||  |||||||| |||||||| ||||||  |||| |||| | ||||||||    
T  33744272 ggtcttgtttaggagtgccccttgagcactctttaagcattttaaaataagtaattatttttttaaaaagtcaaatatttcgattttcaatgcattg 33744176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 207 - 250
Target Start/End: Original strand, 290602 - 290645
Alignment:
Q  207 taaattagataattattcttttaaaatgtcaaaattttcaattt 250  Q
    |||||||  |||||||||||||||||||||||| ||||||||||    
T  290602 taaattaagtaattattcttttaaaatgtcaaagttttcaattt 290645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 257
Target Start/End: Complemental strand, 51904665 - 51904614
Alignment:
Q  206 ttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgc 257  Q
    ||||||||  |||||||||||||||||||| ||| |||||||||||| ||||    
T  51904665 ttaaattaagtaattattcttttaaaatgttaaagttttcaatttccaatgc 51904614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 250
Target Start/End: Complemental strand, 27934839 - 27934781
Alignment:
Q  192 actctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 250  Q
    |||||||||||||  ||||||| ||||||||| ||| ||||| |||||| |||||||||    
T  27934839 actctttaagcattctaaattaaataattattatttaaaaatatcaaaagtttcaattt 27934781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 261
Target Start/End: Original strand, 48811928 - 48811998
Alignment:
Q  191 cactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgcattg 261  Q
    |||||||||||| ||||||| ||  ||||||||||||||||| || |||  ||||||| ||| ||||||||    
T  48811928 cactctttaagcctgttaaaataagtaattattcttttaaaaagtaaaatatttcaatctccaatgcattg 48811998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 250
Target Start/End: Complemental strand, 49023 - 48938
Alignment:
Q  165 ggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 250  Q
    ||||||||||||||||  |||||   ||||| |||| |||| |||||||  |||||||||||  ||||||| ||| ||||||||||    
T  49023 ggtcttgttaacgagttcccctaggacactcgttaatcatgctaaattaagtaattattcttgaaaaatgtaaaagttttcaattt 48938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 250
Target Start/End: Complemental strand, 31807917 - 31807832
Alignment:
Q  165 ggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 250  Q
    ||||||||||||||||| |||   |||||| |||||||||  |||| ||  |||||||||||| ||||||| | | ||||||||||    
T  31807917 ggtcttgttaacgagtgcccccggagcactatttaagcattctaaaataagtaattattctttaaaaatgtgatagttttcaattt 31807832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 169 - 250
Target Start/End: Original strand, 48551013 - 48551094
Alignment:
Q  169 ttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 250  Q
    ||||||||||||||||| | ||||||||||||||||| |||||||   ||||||||||| ||||||||||| ||||||||||    
T  48551013 ttgttaacgagtgtccccagagcactctttaagcatgctaaattaagaaattattctttaaaaatgtcaaagttttcaattt 48551094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 160 - 250
Target Start/End: Original strand, 45757893 - 45757983
Alignment:
Q  160 ttaaaggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 250  Q
    |||| ||||||||||||||||||| |   | |||||||||||||||||||||||   ||||||||||| ||||||||||| ||||||||||    
T  45757893 ttaagggtcttgttaacgagtgtctccggatcactctttaagcatgttaaattaagcaattattctttaaaaatgtcaaagttttcaattt 45757983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 196 - 252
Target Start/End: Original strand, 12140145 - 12140201
Alignment:
Q  196 tttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttcc 252  Q
    |||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||    
T  12140145 tttaagcatgctaaattaaataattattcttttaaaatgtcaaagttttcaatttcc 12140201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 260
Target Start/End: Original strand, 24313522 - 24313615
Alignment:
Q  167 tcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgcatt 260  Q
    ||||||||||||||||||     ||||||||||| |||  ||||||| | ||||||||||| ||||||||||| |||||||||| | |||||||    
T  24313522 tcttgttaacgagtgtcctcggggcactctttaaacattctaaattaaacaattattctttaaaaatgtcaaagttttcaattttcaatgcatt 24313615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 191 - 251
Target Start/End: Complemental strand, 28692035 - 28691975
Alignment:
Q  191 cactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttc 251  Q
    |||||||||| ||| ||||||||  |||||||||||||||||||| ||| |||||||||||    
T  28692035 cactctttaaacatattaaattaagtaattattcttttaaaatgttaaagttttcaatttc 28691975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 159 - 252
Target Start/End: Complemental strand, 54290920 - 54290827
Alignment:
Q  159 tttaaaggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttcc 252  Q
    ||||| |||||||||||||||| ||||    |||||||||||||||| ||||||||  | ||||||||| |||| ||||||   ||||||||||    
T  54290920 tttaagggtcttgttaacgagtatccccggggcactctttaagcatgataaattaggaagttattctttaaaaaagtcaaacagttcaatttcc 54290827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 259
Target Start/End: Original strand, 25317800 - 25317868
Alignment:
Q  191 cactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgcat 259  Q
    ||||||| ||||||| ||||| |  |||||||||||||||||| | ||| |||||||||||| ||||||    
T  25317800 cactcttcaagcatgctaaataaagtaattattcttttaaaatttaaaagttttcaatttccaatgcat 25317868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 252
Target Start/End: Original strand, 43803936 - 43804025
Alignment:
Q  162 aaaggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttcc 252  Q
    ||||||||||||||||||||||| |   | |||||||||||||| |||||| || | ||||||||| |||| ||||||   ||||||||||    
T  43803936 aaaggtcttgttaacgagtgtcc-tcgggtactctttaagcatgataaattggaaagttattctttaaaaaagtcaaacaattcaatttcc 43804025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 261
Target Start/End: Original strand, 37388403 - 37388472
Alignment:
Q  192 actctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgcattg 261  Q
    |||||||||  |||||||||||  |||||||||||| ||||||| ||| |||||| ||| | ||||||||    
T  37388403 actctttaaatatgttaaattaagtaattattctttaaaaatgtgaaatttttcagttttcaatgcattg 37388472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 233
Target Start/End: Complemental strand, 45584432 - 45584395
Alignment:
Q  196 tttaagcatgttaaattagataattattcttttaaaat 233  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  45584432 tttaagcatgttaaattaagtaattattcttttaaaat 45584395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 250
Target Start/End: Complemental strand, 11465761 - 11465677
Alignment:
Q  166 gtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 250  Q
    |||||||||||||||||||  | | ||||||||||| || || ||| | | ||||||||||| |||| |||||||  ||||||||    
T  11465761 gtcttgttaacgagtgtcctaagaacactctttaaggatttttaataaaaaaattattctttaaaaaagtcaaaaacttcaattt 11465677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 227
Target Start/End: Original strand, 50604020 - 50604084
Alignment:
Q  163 aaggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttt 227  Q
    ||||||||||||||||||||| | |  ||||||||||| |||  |||||||  ||||||||||||    
T  50604020 aaggtcttgttaacgagtgtctccagggcactctttaaccattctaaattaagtaattattcttt 50604084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 250
Target Start/End: Original strand, 54911199 - 54911255
Alignment:
Q  194 tctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 250  Q
    ||||||| |||  ||||||| ||||||||||||||||||||| ||| |||| |||||    
T  54911199 tctttaaacattctaaattaaataattattcttttaaaatgttaaagttttaaattt 54911255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 38595037 - 38594973
Alignment:
Q  196 tttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgcatt 260  Q
    |||||| ||| |||||||  ||||||||||||||||||||||||||||||||||||| |||||||    
T  38595037 tttaagtatgctaaattaagtaattattcttttaaaatgtcaaaattttcaatttccaatgcatt 38594973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 263
Target Start/End: Original strand, 10228288 - 10228385
Alignment:
Q  164 aggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgcattggt 263  Q
    ||||||||||||||||||||||||  | |||||||||||||| |||   || |||||||||||| ||||| | ||| |||||||||||||||||| ||||    
T  10228288 aggtcttgttaacgagtgtccctag-gtactctttaagcatgctaataaag-taattattctttcaaaatttaaaagttttcaatttccgatgcactggt 10228385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 238
Target Start/End: Original strand, 8208148 - 8208221
Alignment:
Q  165 ggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaa 238  Q
    ||||||||||||||||||    | |||||||||||||||| ||||||| || |||||||||||||||| |||||    
T  8208148 ggtcttgttaacgagtgttttcagagcactctttaagcattttaaatttgaaaattattcttttaaaaagtcaa 8208221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 14309195 - 14309129
Alignment:
Q  194 tctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgcatt 260  Q
    ||||||||||| ||||||||  || ||||||||| ||||| ||||| |||||||||||| |||||||    
T  14309195 tctttaagcatattaaattaagtagttattctttaaaaatatcaaagttttcaatttccaatgcatt 14309129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 158 - 251
Target Start/End: Complemental strand, 34032234 - 34032141
Alignment:
Q  158 ttttaaaggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttc 251  Q
    |||||| |||||||||||||||||||| |   |||||||||||||||  |||| ||  |||||||||||| |||| || |||  ||||||||||    
T  34032234 ttttaagggtcttgttaacgagtgtccttggggcactctttaagcattctaaaataagtaattattctttaaaaaagttaaatatttcaatttc 34032141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 258
Target Start/End: Original strand, 4695067 - 4695134
Alignment:
Q  191 cactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgca 258  Q
    ||||||||||||||| ||||||| | ||||||||||| ||||| | ||| |||| ||||||| |||||    
T  4695067 cactctttaagcatgctaaattaaaaaattattctttaaaaatattaaagtttttaatttccaatgca 4695134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 263
Target Start/End: Complemental strand, 27325917 - 27325863
Alignment:
Q  209 aattagataattattcttttaaaatgtcaaaattttcaatttccgatgcattggt 263  Q
    |||||| |||||||||||| ||||||||||| |||||||||| | ||||| ||||    
T  27325917 aattaggtaattattctttaaaaatgtcaaacttttcaattttcaatgcactggt 27325863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 238
Target Start/End: Complemental strand, 30501278 - 30501204
Alignment:
Q  164 aggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaa 238  Q
    |||||||||||||||||| ||| |  |||||||||||||||   |||||   ||||||||||||||||| |||||    
T  30501278 aggtcttgttaacgagtgcccccagggcactctttaagcatcccaaatttagtaattattcttttaaaaagtcaa 30501204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 238
Target Start/End: Complemental strand, 30541621 - 30541547
Alignment:
Q  164 aggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaa 238  Q
    |||||||||||||||||| ||| |  |||||||||||||||   |||||   ||||||||||||||||| |||||    
T  30541621 aggtcttgttaacgagtgcccccagggcactctttaagcatcccaaatttagtaattattcttttaaaaagtcaa 30541547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 250
Target Start/End: Complemental strand, 21259523 - 21259470
Alignment:
Q  197 ttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 250  Q
    ||||| ||||||||||| | ||||||||||| || ||||||||||||| |||||    
T  21259523 ttaagaatgttaaattaaaaaattattctttaaagatgtcaaaatttttaattt 21259470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 210
Target Start/End: Original strand, 10051700 - 10051744
Alignment:
Q  166 gtcttgttaacgagtgtccctatagcactctttaagcatgttaaa 210  Q
    ||||||||||||||||||||||  |||||||||||| || |||||    
T  10051700 gtcttgttaacgagtgtccctaaggcactctttaaggattttaaa 10051744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 252
Target Start/End: Complemental strand, 17774388 - 17774332
Alignment:
Q  196 tttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttcc 252  Q
    ||||||||| |||||| |  |||||||||||| ||||| ||||| ||||||||||||    
T  17774388 tttaagcattttaaatcaagtaattattctttaaaaatatcaaatttttcaatttcc 17774332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 235
Target Start/End: Original strand, 39335665 - 39335709
Alignment:
Q  191 cactctttaagcatgttaaattagataattattcttttaaaatgt 235  Q
    |||||||||| ||| |||||||| ||||||||||||| |||||||    
T  39335665 cactctttaaacattttaaattaaataattattctttaaaaatgt 39335709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 191 - 250
Target Start/End: Complemental strand, 4655072 - 4655013
Alignment:
Q  191 cactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 250  Q
    ||||||||||||||| ||||||||||||||||| ||||||||| ||||| ||||||||||    
T  4655072 cactctttaagcatgctaaattagataattatttttttaaaatatcaaagttttcaattt 4655013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 190 - 257
Target Start/End: Complemental strand, 24389735 - 24389668
Alignment:
Q  190 gcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgc 257  Q
    |||||||||||||||| |||||||  ||||||||||||||| |||||||| |||||||||||| ||||    
T  24389735 gcactctttaagcatgctaaattaagtaattattcttttaagatgtcaaagttttcaatttccaatgc 24389668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 169 - 261
Target Start/End: Complemental strand, 6334805 - 6334713
Alignment:
Q  169 ttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgcattg 261  Q
    ||||||||||||||||    | |||||||||| |||| ||||||| | ||||||| ||| ||||||||||| |||||||||||| ||||||||    
T  6334805 ttgttaacgagtgtcctcggaacactctttaaacatgctaaattaaaaaattattttttaaaaatgtcaaagttttcaatttccaatgcattg 6334713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 9049256 - 9049192
Alignment:
Q  196 tttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgcatt 260  Q
    ||||||||||||||||||  |||||||||||||||||||| ||| |||||||||| | |||||||    
T  9049256 tttaagcatgttaaattaagtaattattcttttaaaatgttaaatttttcaattttcaatgcatt 9049192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 249
Target Start/End: Original strand, 21277517 - 21277606
Alignment:
Q  160 ttaaaggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatt 249  Q
    ||||||||||||||||||||||   |   | ||||||||||| || ||||||||  |||||||| ||||||||||||||| |||||||||    
T  21277517 ttaaaggtcttgttaacgagtgcttccgcatcactctttaagtattttaaattaagtaattatttttttaaaatgtcaaacttttcaatt 21277606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 251
Target Start/End: Complemental strand, 30869695 - 30869613
Alignment:
Q  167 tcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttc 251  Q
    ||||||||||||||||| | |  |||||||||||||||| ||||||| ||  ||||||||| ||||||| ||| |||||||||||    
T  30869695 tcttgttaacgagtgtctccagggcactctttaagcatgctaaattaaat--ttattctttaaaaatgttaaagttttcaatttc 30869613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 252
Target Start/End: Complemental strand, 33634909 - 33634848
Alignment:
Q  191 cactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttcc 252  Q
    ||||||||||| ||||||||||| |||||||||| |||||||| | ||| ||||||||||||    
T  33634909 cactctttaaggatgttaaattaaataattattcgtttaaaatatgaaagttttcaatttcc 33634848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 252
Target Start/End: Complemental strand, 6411510 - 6411424
Alignment:
Q  166 gtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttcc 252  Q
    |||||||||||||||||  | | |||||| ||||| |||| ||||| |  |||||||||||||||||| | ||| ||||||||||||    
T  6411510 gtcttgttaacgagtgtttccagagcactttttaaacatgctaaataaagtaattattcttttaaaatttaaaagttttcaatttcc 6411424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 258
Target Start/End: Complemental strand, 12762981 - 12762915
Alignment:
Q  192 actctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgca 258  Q
    ||||||||||||| | ||||||  |||||||||||  ||||||| |||||||||||||||| |||||    
T  12762981 actctttaagcatttaaaattaagtaattattcttaaaaaatgttaaaattttcaatttccaatgca 12762915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 252
Target Start/End: Complemental strand, 12848584 - 12848522
Alignment:
Q  190 gcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttcc 252  Q
    ||||||||||||||| ||||||||  ||| |||||||| | ||||||||| ||||||||||||    
T  12848584 gcactctttaagcatattaaattaagtaactattctttaataatgtcaaagttttcaatttcc 12848522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 190 - 258
Target Start/End: Original strand, 3074074 - 3074143
Alignment:
Q  190 gcactctttaagcatgttaaattagataattattcttttaaaatgtcaaa-attttcaatttccgatgca 258  Q
    |||||||||||||||| |||||||  ||||||||| |||||||| |||||  |||||||||||| |||||    
T  3074074 gcactctttaagcatgataaattaagtaattattcatttaaaatatcaaagtttttcaatttccaatgca 3074143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 165 - 261
Target Start/End: Original strand, 13538364 - 13538461
Alignment:
Q  165 ggtcttgttaacgagtgtccct-atagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgcattg 261  Q
    ||||||||||||||||| |||  |  |||||||||||||||  ||||||||| ||||||||||| ||||  |||||   |||||||||| ||||||||    
T  13538364 ggtcttgttaacgagtgcccccgagggcactctttaagcatactaaattagaaaattattctttaaaaaattcaaataattcaatttccaatgcattg 13538461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 189 - 258
Target Start/End: Complemental strand, 30822833 - 30822764
Alignment:
Q  189 agcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgca 258  Q
    ||||||||| |||| | ||||||||  |||||||| ||| ||||||||||| |||||||||||| |||||    
T  30822833 agcactcttaaagctttttaaattaagtaattattttttgaaaatgtcaaagttttcaatttccaatgca 30822764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 258
Target Start/End: Complemental strand, 565830 - 565736
Alignment:
Q  165 ggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataat--tattcttttaaaatgtcaaaattttcaatttccgatgca 258  Q
    ||||||||||||||||||||| | |  |||||||||||||| |||||||  |||   |||||||| ||||||| ||| |||||||||||| |||||    
T  565830 ggtcttgttaacgagtgtcccgagat-actctttaagcatgctaaattaagtaaaagtattctttaaaaatgtgaaagttttcaatttcctatgca 565736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 250
Target Start/End: Complemental strand, 42342581 - 42342541
Alignment:
Q  210 attagataattattcttttaaaatgtcaaaattttcaattt 250  Q
    |||| ||||||||||||| ||||||||||||||||||||||    
T  42342581 attaaataattattctttaaaaatgtcaaaattttcaattt 42342541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 252
Target Start/End: Original strand, 32859754 - 32859841
Alignment:
Q  165 ggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttcc 252  Q
    ||||||||||||||||| ||| |  ||||||||||| |||| ||||||||  | ||||||||| |||| ||||||   ||||||||||    
T  32859754 ggtcttgttaacgagtgcccccagggcactctttaaacatgctaaattaggaagttattctttaaaaaagtcaaacagttcaatttcc 32859841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 258
Target Start/End: Complemental strand, 431720 - 431678
Alignment:
Q  216 taattattcttttaaaatgtcaaaattttcaatttccgatgca 258  Q
    |||||||||||| ||||||| |||||||||||||||| |||||    
T  431720 taattattctttaaaaatgttaaaattttcaatttccaatgca 431678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 261
Target Start/End: Original strand, 8964368 - 8964457
Alignment:
Q  171 gttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgcattg 261  Q
    ||||||||||||| | | |||||| |||||||||  |||||||  |||||||||||| |||| || |||  ||||||||||| ||||||||    
T  8964368 gttaacgagtgtctcca-agcactgtttaagcattctaaattaagtaattattctttaaaaaagtaaaatatttcaatttccaatgcattg 8964457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 250
Target Start/End: Original strand, 33454964 - 33455022
Alignment:
Q  192 actctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 250  Q
    |||||||||||||| |||||||   || |||||||| ||||||||||| ||||||||||    
T  33454964 actctttaagcatgctaaattaagaaactattctttaaaaatgtcaaagttttcaattt 33455022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 261
Target Start/End: Complemental strand, 2826098 - 2825997
Alignment:
Q  160 ttaaaggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgcat 259  Q
    |||| |||||||||||||||||||||| | | |||||||||||||  |||| ||   ||||||| ||| |||| || |||  |||| |||||| ||||||    
T  2826098 ttaagggtcttgttaacgagtgtccctgtggtactctttaagcatactaaaataagaaattattttttaaaaaagtaaaatatttcgatttccaatgcat 2825999  T
Q  260 tg 261  Q
    ||    
T  2825998 tg 2825997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 250
Target Start/End: Complemental strand, 6084015 - 6083954
Alignment:
Q  189 agcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 250  Q
    ||||||||||||||||  ||||||   |||||||| ||||||||| ||||| ||||||||||    
T  6084015 agcactctttaagcatactaaatttagtaattattattttaaaatatcaaagttttcaattt 6083954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 165 - 251
Target Start/End: Complemental strand, 13445868 - 13445782
Alignment:
Q  165 ggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttc 251  Q
    |||||||||||||||||||||    |||||||||||||||| |||||||  ||| |||||||| ||||||| ||| |||||||||||    
T  13445868 ggtcttgttaacgagtgtccccggtgcactctttaagcatgctaaattaagtaagtattctttaaaaatgtgaaagttttcaatttc 13445782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 252
Target Start/End: Complemental strand, 33970464 - 33970376
Alignment:
Q  164 aggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttcc 252  Q
    |||||||||||| |||| |||  | | ||||||||||  ||||||||| | ||||||||||||| ||||| | |||||||| |||||||    
T  33970464 aggtcttgttaatgagtatcctcaaaacactctttaaatatgttaaataaaataattattctttcaaaatttaaaaatttttaatttcc 33970376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 232
Target Start/End: Original strand, 1840977 - 1841019
Alignment:
Q  190 gcactctttaagcatgttaaattagataattattcttttaaaa 232  Q
    ||||||||||||||| |||||||  ||||||||||||||||||    
T  1840977 gcactctttaagcatattaaatttaataattattcttttaaaa 1841019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 250
Target Start/End: Complemental strand, 3753229 - 3753147
Alignment:
Q  168 cttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 250  Q
    ||||||||| |||| |||| |  ||||||||||||||| ||||| |  |||||||||||| ||||| | ||| ||||||||||    
T  3753229 cttgttaacaagtgcccctgtgccactctttaagcatgataaataaagtaattattctttcaaaatttaaaagttttcaattt 3753147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 258
Target Start/End: Complemental strand, 29716850 - 29716809
Alignment:
Q  217 aattattcttttaaaatgtcaaaattttcaatttccgatgca 258  Q
    ||||||| ||||||||||||||| |||||||||||| |||||    
T  29716850 aattatttttttaaaatgtcaaagttttcaatttccaatgca 29716809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 261
Target Start/End: Complemental strand, 6586553 - 6586458
Alignment:
Q  165 ggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgcattg 261  Q
    |||||||||||||| || ||||   |||||||||||||||  ||||||||  ||||| ||||| |||| |||| |   |||||||||||||||||||    
T  6586553 ggtcttgttaacgattg-ccctggggcactctttaagcatactaaattaggaaattaatctttgaaaaagtcagatagttcaatttccgatgcattg 6586458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 190 - 250
Target Start/End: Original strand, 26695 - 26755
Alignment:
Q  190 gcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 250  Q
    |||||||||||||||| |||||||  |||||||| ||||||||||||||| ||||||||||    
T  26695 gcactctttaagcatgctaaattaagtaattattattttaaaatgtcaaagttttcaattt 26755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 250
Target Start/End: Original strand, 5756 - 5816
Alignment:
Q  190 gcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 250  Q
    |||||||||||| || ||||||||  ||||| |||||| ||||||||||| ||||||||||    
T  5756 gcactctttaagaattttaaattaagtaatttttctttaaaaatgtcaaagttttcaattt 5816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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