View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13091_low_1 (Length: 555)

Name: NF13091_low_1
Description: NF13091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13091_low_1
NF13091_low_1
[»] chr1 (6 HSPs)
chr1 (4-541)||(29690549-29691086)
chr1 (4-541)||(29718061-29718598)
chr1 (4-114)||(29658461-29658571)
chr1 (4-433)||(30827579-30828014)
chr1 (4-105)||(33160988-33161089)
chr1 (299-524)||(33161277-33161499)
[»] chr5 (1 HSPs)
chr5 (8-97)||(20477613-20477702)
[»] chr6 (3 HSPs)
chr6 (8-106)||(6403366-6403464)
chr6 (380-430)||(6427344-6427394)
chr6 (15-88)||(6395335-6395408)
[»] chr4 (1 HSPs)
chr4 (386-423)||(1524174-1524211)


Alignment Details
Target: chr1 (Bit Score: 530; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 4 - 541
Target Start/End: Complemental strand, 29691086 - 29690549
Alignment:
Q  4 agagaactcggcaacatgttgatcattgagaaaattagtgtgactaagatccaaatgttgtatatacggagagttggataacagagagctaattccatta 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  29691086 agagaactcggcaacatgttgatcattgagaaaattagtgtgactaagatccaaatgttgtatatatggagagttggataacagagagctaattccatta 29690987  T
Q  104 atatgatcctcaacaggctgagagaggttgtaccaagggcgagagaggtcgaggtgtttgagcaaagggaaacaatgagcaacgggtaagagctggctgt 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29690986 atatgatcctcaacaggctgagagaggttgtaccaagggcgagagaggtcgaggtgtttgagcaaagggaaacaatgagcaacgggtaagagctggctgt 29690887  T
Q  204 gaacaaaagaagcacgggaacaagtgagagaggtcaatgttgtaacggtttggcagaatgcgagcaagccatctgctggaaagggggtagggacagggag 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29690886 gaacaaaagaagcacgggaacaagtgagagaggtcaatgttgtaacggtttggcagaatgcgagcaagccatctgctggaaagggggtagggacagggag 29690787  T
Q  304 tttgagtgatgtgagttttttcaatgggaagttagatattttgcagagaagatcgttcggtaaatagttgtagcgggagaggtcgagggaagtgaggttg 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29690786 tttgagtgatgtgagttttttcaatgggaagttagatattttgcagagaagatcgttcggtaaatagttgtagcgggagaggtcgagggaagtgaggttg 29690687  T
Q  404 gtgaaccttttcaagagacgagggaggtaatgacgtgatgcatcagttacggagagtgaaaaccgaagacgattagtgatggagaggatttgttttgaaa 503  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29690686 gtgaaccttttcaagagacgagggaggtaatgacgtgatgcatcagtgacggagagtgaaaaccgaagacgattagtgatggagaggatttgttttgaaa 29690587  T
Q  504 cgagagatagagaattgaagttgatttgagatgatttt 541  Q
    ||||||||||||||||||||||||||||||||||||||    
T  29690586 cgagagatagagaattgaagttgatttgagatgatttt 29690549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 4 - 541
Target Start/End: Complemental strand, 29718598 - 29718061
Alignment:
Q  4 agagaactcggcaacatgttgatcattgagaaaattagtgtgactaagatccaaatgttgtatatacggagagttggataacagagagctaattccatta 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  29718598 agagaactcggcaacatgttgatcattgagaaaattagtgtgactaagatccaaatgttgtatatatggagagttggataacagagagctaattccatta 29718499  T
Q  104 atatgatcctcaacaggctgagagaggttgtaccaagggcgagagaggtcgaggtgtttgagcaaagggaaacaatgagcaacgggtaagagctggctgt 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29718498 atatgatcctcaacaggctgagagaggttgtaccaagggcgagagaggtcgaggtgtttgagcaaagggaaacaatgagcaacgggtaagagctggctgt 29718399  T
Q  204 gaacaaaagaagcacgggaacaagtgagagaggtcaatgttgtaacggtttggcagaatgcgagcaagccatctgctggaaagggggtagggacagggag 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29718398 gaacaaaagaagcacgggaacaagtgagagaggtcaatgttgtaacggtttggcagaatgcgagcaagccatctgctggaaagggggtagggacagggag 29718299  T
Q  304 tttgagtgatgtgagttttttcaatgggaagttagatattttgcagagaagatcgttcggtaaatagttgtagcgggagaggtcgagggaagtgaggttg 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29718298 tttgagtgatgtgagttttttcaatgggaagttagatattttgcagagaagatcgttcggtaaatagttgtagcgggagaggtcgagggaagtgaggttg 29718199  T
Q  404 gtgaaccttttcaagagacgagggaggtaatgacgtgatgcatcagttacggagagtgaaaaccgaagacgattagtgatggagaggatttgttttgaaa 503  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29718198 gtgaaccttttcaagagacgagggaggtaatgacgtgatgcatcagtgacggagagtgaaaaccgaagacgattagtgatggagaggatttgttttgaaa 29718099  T
Q  504 cgagagatagagaattgaagttgatttgagatgatttt 541  Q
    ||||||||||||||||||||||||||||||||||||||    
T  29718098 cgagagatagagaattgaagttgatttgagatgatttt 29718061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 4 - 114
Target Start/End: Complemental strand, 29658571 - 29658461
Alignment:
Q  4 agagaactcggcaacatgttgatcattgagaaaattagtgtgactaagatccaaatgttgtatatacggagagttggataacagagagctaattccatta 103  Q
    ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  29658571 agagaactcggcaacatgttgatcattgagaaacttagtgcgactaagatccaaatgttgtatatacggagagttggataacagagagttaattccatta 29658472  T
Q  104 atatgatcctc 114  Q
    | |||||||||    
T  29658471 acatgatcctc 29658461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 4 - 433
Target Start/End: Original strand, 30827579 - 30828014
Alignment:
Q  4 agagaactcggcaacatgttgatcattgagaaaattagtgtgactaagatccaaatgttgtatatacggagagttggataacagagagctaattccatta 103  Q
    |||||| |||||||||||||||||||||||||||  ||||  |||||||||||||||||||||||| ||||||||||| || |||||   || |||||||    
T  30827579 agagaagtcggcaacatgttgatcattgagaaaacaagtgaaactaagatccaaatgttgtatatatggagagttggacaagagagattgaaatccatta 30827678  T
Q  104 atatgatcctcaacaggctgagagaggttgtaccaagggcgagagaggtcgaggtgtttgagcaaagggaaacaatgagcaacgggt---aagagctggc 200  Q
    || ||| | |   |  | |  | | |||   || ||||| ||||||||| ||| ||||||||||||||||||||||  |||| | ||   ||||| |||     
T  30827679 atgtgaacgttgtcgaggtacgtggggtcaaacaaagggtgagagaggttgagttgtttgagcaaagggaaacaatcggcaatgagtaacaagaggtggt 30827778  T
Q  201 tgtgaacaaaagaagcacgggaac-aagtgagagaggtcaatgttgtaacggtttggcagaatgcgagcaagccatctgctggaaagggggtagggacag 299  Q
    ||| | ||||| ||||| |||||| |||||||||| || || | ||||| ||| | | |||| ||  ||||||||| ||  || ||   ||    || ||    
T  30827779 tgttatcaaaataagcatgggaacaaagtgagagaagttaaagatgtaatggtcttggagaaagcctgcaagccatttgtggggaaatcggattcgagag 30827878  T
Q  300 ggagtttgagtgatgtgagttttttcaatgggaagttagatattttgcagagaagatcgttcggtaaatagttg--tagcgggagaggtcgagggaagtg 397  Q
    ||||||||||||||||||||| |||||||||||| ||||| ||||||  |||||| ||||   ||  ||| |||  ||| |||||||||||||||| |||    
T  30827879 ggagtttgagtgatgtgagttgtttcaatgggaaattagagattttgatgagaagttcgtcgagtggatacttgtatagtgggagaggtcgagggaggtg 30827978  T
Q  398 aggttggtgaaccttttcaagagacgagggaggtaa 433  Q
    || |||||||||||||| ||||||||||| ||||||    
T  30827979 agattggtgaaccttttgaagagacgaggaaggtaa 30828014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 4 - 105
Target Start/End: Original strand, 33160988 - 33161089
Alignment:
Q  4 agagaactcggcaacatgttgatcattgagaaaattagtgtgactaagatccaaatgttgtatatacggagagttggataacagagagctaattccatta 103  Q
    ||||||||||||||||||||||||||| ||||||| ||||||| | |||||||||| |||||||||  || |||||||||| ||||||  || |||||||    
T  33160988 agagaactcggcaacatgttgatcattcagaaaataagtgtgatttagatccaaatattgtatatattgacagttggataagagagagtgaaatccatta 33161087  T
Q  104 at 105  Q
    ||    
T  33161088 at 33161089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 299 - 524
Target Start/End: Original strand, 33161277 - 33161499
Alignment:
Q  299 gggagtttgagtgatgtgagttttttcaatgggaagttagatattttgcagagaagatcgttcggtaaatagttgtagcgggagaggtcgagggaagtga 398  Q
    |||||||||||||||| ||||||   ||||||||| ||| | ||||||| |||||| || |   ||  ||||   ||| |||||||||| ||||| ||||    
T  33161277 gggagtttgagtgatgagagttt---caatgggaaattatagattttgcggagaagctcatctagttcatagccatagtgggagaggtcaagggaggtga 33161373  T
Q  399 ggttggtgaaccttttcaagagacgagggaggtaatgacgtgatgcatcagttacggagagtgaaaaccgaagacgattagtgatggagaggatttgttt 498  Q
    |||||||||||||||||||||||||||||||| || |  ||| ||  |   | | || |||||| || ||||||| ||||||||||||||| |  |||||    
T  33161374 ggttggtgaaccttttcaagagacgagggaggaaagggtgtgttgagtttttgagggtgagtgagaatcgaagactattagtgatggagagaaactgttt 33161473  T
Q  499 tgaaacgagagatagagaattgaagt 524  Q
     || ||||| ||||||||||| ||||    
T  33161474 ggagacgagggatagagaattcaagt 33161499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 8 - 97
Target Start/End: Complemental strand, 20477702 - 20477613
Alignment:
Q  8 aactcggcaacatgttgatcattgagaaaattagtgtgactaagatccaaatgttgtatatacggagagttggataacagagagctaatt 97  Q
    |||||||||||| |||||||||| ||||||| ||| |    ||||||||||||||||||| | ||| | |||||||| ||||||| ||||    
T  20477702 aactcggcaacaagttgatcattcagaaaataagtcttttgaagatccaaatgttgtatacatggacacttggataatagagagcaaatt 20477613  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 8 - 106
Target Start/End: Original strand, 6403366 - 6403464
Alignment:
Q  8 aactcggcaacatgttgatcattgagaaaattagtgtgactaagatccaaatgttgtatatacggagagttggataacagagagctaattccattaata 106  Q
    ||||| |||||||||  |||||| ||||||| | ||| | |||||||||||||||||||| |   | | |||||||||||||||   ||||||||||||    
T  6403366 aactcagcaacatgtaaatcattcagaaaataactgttattaagatccaaatgttgtatacatctacacttggataacagagagtatattccattaata 6403464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 380 - 430
Target Start/End: Original strand, 6427344 - 6427394
Alignment:
Q  380 gagaggtcgagggaagtgaggttggtgaaccttttcaagagacgagggagg 430  Q
    |||||||||||||| |||||||  ||||||||||| |||||| ||||||||    
T  6427344 gagaggtcgagggaggtgaggtgtgtgaaccttttgaagagaagagggagg 6427394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 6395335 - 6395408
Alignment:
Q  15 caacatgttgatcattgagaaaattagtgtgactaagatccaaatgttgtatatacggagagttggataacaga 88  Q
    |||||||||||||||| |||  | || |||||| ||| ||||||||||||||| | ||||| ||||||| ||||    
T  6395335 caacatgttgatcatttagactagtaatgtgacaaagttccaaatgttgtatacatggagacttggatagcaga 6395408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 423
Target Start/End: Complemental strand, 1524211 - 1524174
Alignment:
Q  386 tcgagggaagtgaggttggtgaaccttttcaagagacg 423  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  1524211 tcgagggaagtgaggttggtgaacctttggaagagacg 1524174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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