View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13091_low_10 (Length: 300)
Name: NF13091_low_10
Description: NF13091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13091_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 32251497 - 32251640
Alignment:
| Q |
1 |
taatcagtgaaaccttcatctgaaccaccaaaaccacaacccaagaagtgtgcaaagaagaacaaattcaacctctttgttgggaaatcaactgggacag |
100 |
Q |
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| T |
32251497 |
taatcattgaaacctccatctgaaccaccaaaaccacaacccaagaagtgtgcaaagaagaacaaattcaacctctttgttgggaaatcaactgggacag |
32251596 |
T |
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| Q |
101 |
agaaagaaatagaaaggggtcgtgagagataggatgatataact |
144 |
Q |
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| T |
32251597 |
agaaagaaatagaaaggggtcgtgagagataggaggatataact |
32251640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 260
Target Start/End: Original strand, 32251687 - 32251717
Alignment:
| Q |
230 |
tataagagcgccaccccttgctactaacctg |
260 |
Q |
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| T |
32251687 |
tataagagcgccaccccttgctactaacctg |
32251717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 228
Target Start/End: Original strand, 38789655 - 38789708
Alignment:
| Q |
175 |
gcaacacagccactcatttcaactgaaccgtactatctccaccattcacatttc |
228 |
Q |
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| T |
38789655 |
gcaacagagccactcatttctactgaaccatactacctccaccattcacatttc |
38789708 |
T |
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