View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13091_low_11 (Length: 283)
Name: NF13091_low_11
Description: NF13091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13091_low_11 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 134; Significance: 8e-70; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 104 - 265
Target Start/End: Complemental strand, 3684672 - 3684511
Alignment:
| Q |
104 |
tcctaccacactcctagtgcccaaaatcaaaggaagaatggatcaagcatactccaccagagcgaagagacacaagtgataagcaagcagactcgaacaa |
203 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| || |
|
|
| T |
3684672 |
tcctaccacactcctattgcccaaaatcaaaggaagaatggatcaagcatactccaccagagcgaagagacacaagtgataaggaagcaggttcgaaaaa |
3684573 |
T |
|
| Q |
204 |
ccccacttaaagacacccaaacaagcaccccacatagtgagactaccaactccagcagagaa |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
3684572 |
ccccacttaaagacacccaaacaagcaccccacacagtgagactaccgactccagcagagaa |
3684511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 3684774 - 3684740
Alignment:
| Q |
1 |
accagaacaccaatagaaaagtcacaccaaacaac |
35 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
3684774 |
accagaacaccaatagaaaagtcacaccaaacaac |
3684740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University