View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13091_low_15 (Length: 233)
Name: NF13091_low_15
Description: NF13091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13091_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 36314227 - 36314009
Alignment:
| Q |
1 |
tgttaacactttcatccgcaagttggtggtgttacgggtgacttccaacaatccttttaaaagtttattgataatttcactttccaaacgtttactttca |
100 |
Q |
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| T |
36314227 |
tgttaacactttcgtccgcaagttggtggtgttacgcgtgacttccaacaatccttttaaaagtttattgataatttcactttccaaacgtttactttca |
36314128 |
T |
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| Q |
101 |
cggtacggtatatggaaatcaaattatcaaatcgtttcggttgcttggcttcttcttctattccatcaatggaagaggaaagtgagagcacaacaggacc |
200 |
Q |
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| T |
36314127 |
cggta-----tatggaaatcaaattatcaaatcgtttcggttgcttggcttcttcttctattccatcaatggaagaggaaagtgagagcacaacaggacc |
36314033 |
T |
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| Q |
201 |
accagcaatggaagaggaaagtga |
224 |
Q |
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| T |
36314032 |
accagcaatggaagaggaaagtga |
36314009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 50 - 105
Target Start/End: Complemental strand, 36334246 - 36334191
Alignment:
| Q |
50 |
aatccttttaaaagtttattgataatttcactttccaaacgtttactttcacggta |
105 |
Q |
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| T |
36334246 |
aatccttttcaaagtttattgatattttcactttccaaacgtttactttcacggta |
36334191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 193
Target Start/End: Complemental strand, 36336920 - 36336844
Alignment:
| Q |
117 |
aatcaaattatcaaatcgtttcggttgcttggcttcttcttctattccatcaatggaagaggaaagtgagagcacaa |
193 |
Q |
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| T |
36336920 |
aatcaaattatctaatcgtttcagttccttggccatttcttcaactccagcaatggaagaggaaagtgagagcacaa |
36336844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 197
Target Start/End: Complemental strand, 36334156 - 36334080
Alignment:
| Q |
118 |
atcaaattatcaaatcgtttcggttgcttggcttcttcttctattccatcaatggaagaggaaagtgagagcacaacagg |
197 |
Q |
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||||||||||||||||||||| |||||||| |||||| ||||| | ||||| ||||||||||| ||||||||||||| |
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| T |
36334156 |
atcaaattatcaaatcgtttcagttgcttg---acttcttgtattcaaacaatgaaagaggaaagttagagcacaacagg |
36334080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 201
Target Start/End: Complemental strand, 36321446 - 36321405
Alignment:
| Q |
160 |
attccatcaatggaagaggaaagtgagagcacaacaggacca |
201 |
Q |
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| T |
36321446 |
attccaaccatggaagaggaaagtgagagcacaacaggacca |
36321405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 86
Target Start/End: Complemental strand, 36328342 - 36328302
Alignment:
| Q |
46 |
caacaatccttttaaaagtttattgataatttcactttcca |
86 |
Q |
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| T |
36328342 |
caacaatccttttcaaagtttatcgataatttcactttcca |
36328302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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