View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13091_low_2 (Length: 492)
Name: NF13091_low_2
Description: NF13091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13091_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 11 - 486
Target Start/End: Complemental strand, 51806334 - 51805859
Alignment:
| Q |
11 |
catcatcaaccattcttcttctttggactaatagttattatttccatgaccaacatgtcacatgttatcagcacaaaccaatctgagnnnnnnnctctaa |
110 |
Q |
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| T |
51806334 |
catcatcaaccattcttcttctttggactaatagttattatttccatgaccaacatgtcacatgttatcagcacaaaccaatctgagtttttttctctaa |
51806235 |
T |
|
| Q |
111 |
tgaaagagtctctctcaggaaactacccttttgattggggtgtaagcaaagtggataaaccaatctgcgacttcaccggaatcacctgtgacaacaaagg |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51806234 |
tgaaagagtctctctcaggaaactacccttttgattggggtgtaagcaaagtggataaaccaatctgcgacttcaccggaatcacctgtgacaacaaagg |
51806135 |
T |
|
| Q |
211 |
agacatcataagtcttgatttttcaggttggtcatcactttccggaaacttcccatcaaatatttgctcttaccttccaaatttacgtgtcctaaacctc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51806134 |
agacatcataagtcttgatttttcaggttggtcatcactttccggaaacttcccgtcaaatatttgctcttaccttccaaatttacgtgtcctaaacctc |
51806035 |
T |
|
| Q |
311 |
ggtaatacaaaattcaagttcccaacaaacagcataatcaactgttctcacttagaacaactcaacatgaacaagatgcacctgtcaggaacacttcctg |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
51806034 |
ggtaatacaaaattcaagttcccaacaaacagcataatcaactgttctcacttagaactactcaacatgaacaagatgcacctgtcaggaacacttcctg |
51805935 |
T |
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| Q |
411 |
atttctcgtctttaaaatatctcagagtcctcgacttatcatacaactccttcaccggcgattttcccatgtctgt |
486 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51805934 |
atttctcgtctttaaaatatctcagagtcctcgacttatcatacaactccttcaccggcgattttcccatgtctgt |
51805859 |
T |
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