View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13091_low_7 (Length: 317)
Name: NF13091_low_7
Description: NF13091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13091_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 19 - 302
Target Start/End: Complemental strand, 28565928 - 28565642
Alignment:
| Q |
19 |
tccttttatttacatcttaaacattaaagagacatctagaagtttattgcatgatatttctttgatttatatcttaaaacactgttttgacaacctattg |
118 |
Q |
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| T |
28565928 |
tccttttatttacatcttaaacattaaagagacatctagaagtttattgcatgatatttctttgatttatatcttaaaacactgttttgacaacctattg |
28565829 |
T |
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| Q |
119 |
ttctgttttttaaaatgccctctataattcacttttttaatggttcagaaacccgtatctaaagctgttccatctaaaaatgggagtgcacctgcaaaga |
218 |
Q |
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||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28565828 |
ttctgttttttaaaatggcctctataattcactttttttatggttcagaaacccgtatctaaagctgttccatctaaaaatgggagtgcacctgcaaaga |
28565729 |
T |
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| Q |
219 |
aagttgatacttctgaag---aagattctgaagaatcttctgatgaagacaaggtaatagacattttgaagtttattgcatgatgat |
302 |
Q |
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| T |
28565728 |
aagttgatacttctgaagaagaagattctgaagaatcttctgatgaagacaaggtaatagacattttgaagtttattgcatgatgat |
28565642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 151 - 264
Target Start/End: Complemental strand, 28565535 - 28565422
Alignment:
| Q |
151 |
ttttttaatggttcagaaacccgtatctaaagctgttccatctaaaaatgggagtgcacctgcaaagaaagttgatacttctgaagaagattctgaagaa |
250 |
Q |
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|||||| |||||||||||||| | | |||||||||||||||||||||||||||||||||| |||||||||| || | || |||||||||| |||| ||| |
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| T |
28565535 |
tttttttatggttcagaaacctgcagctaaagctgttccatctaaaaatgggagtgcacccgcaaagaaagctgcttctgatgaagaagatactgatgaa |
28565436 |
T |
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| Q |
251 |
tcttctgatgaaga |
264 |
Q |
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| T |
28565435 |
tcttctgatgaaga |
28565422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 42 - 212
Target Start/End: Original strand, 25281608 - 25281776
Alignment:
| Q |
42 |
ttaaagagacatctagaagtttattgcatgatatttctttgatttatatcttaaaacactgttttgacaacctattgttctgttttttaaaatgccctct |
141 |
Q |
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|||||||| ||||| ||||||||||||||||||||| |||||||||||||||| |||||| ||| ||||||||||||||||||||||||| || ||| |
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| T |
25281608 |
ttaaagagccatcttgaagtttattgcatgatattttgttgatttatatcttaa--cactgtgttggcaacctattgttctgttttttaaaacaccgtct |
25281705 |
T |
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| Q |
142 |
ataattcacttttttaatggttcagaaacccgtatctaaagctgttccatctaaaaatgggagtgcacctg |
212 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
25281706 |
ataattcactttttgtatggttcagaaacccgtatctaaagctgttccatctaaaaacaggagtgcacctg |
25281776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 42 - 212
Target Start/End: Original strand, 12347897 - 12348065
Alignment:
| Q |
42 |
ttaaagagacatctagaagtttattgcatgatatttctttgatttatatcttaaaacactgttttgacaacctattgttctgttttttaaaatgccctct |
141 |
Q |
| |
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|||||||| ||||| ||||||||||||||||||| |||||||||||||||| |||||| ||| ||||||||||||||||||||||||| | ||| |
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| T |
12347897 |
ttaaagagccatcttgaagtttattgcatgatatgctgttgatttatatcttaa--cactgtgttggcaacctattgttctgttttttaaaacactgtct |
12347994 |
T |
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| Q |
142 |
ataattcacttttttaatggttcagaaacccgtatctaaagctgttccatctaaaaatgggagtgcacctg |
212 |
Q |
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|||||||||||||| |||||||| |||| ||||||||||| ||||||||||||||| |||||||||||| |
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| T |
12347995 |
ataattcactttttgtatggttcaaaaactcgtatctaaagttgttccatctaaaaacaggagtgcacctg |
12348065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 179 - 302
Target Start/End: Original strand, 20041394 - 20041517
Alignment:
| Q |
179 |
aaagctgttccatctaaaaatgggagtgcacctgcaaagaaagttgatacttctgaagaagattctgaagaatcttctgatgaagacaaggtaatagaca |
278 |
Q |
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|||| |||||||||||||||||| |||||||||| |||||||| |||| ||| | | | |||||||||||||| ||||||||| ||||| |||| | |
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| T |
20041394 |
aaagttgttccatctaaaaatggaagtgcacctgtaaagaaagctgatccttattattcatcttctgaagaatcttttgatgaagatgaggtattagata |
20041493 |
T |
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| Q |
279 |
ttttgaagtttattgcatgatgat |
302 |
Q |
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||||||||||||||||||| |||| |
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| T |
20041494 |
ttttgaagtttattgcatggtgat |
20041517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 264
Target Start/End: Original strand, 20041633 - 20041697
Alignment:
| Q |
200 |
gggagtgcacctgcaaagaaagttgatacttctgaagaagattctgaagaatcttctgatgaaga |
264 |
Q |
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| T |
20041633 |
gggagtgcacccgcaaagaaggctgatagttctgacttagaatctgacgaatcttctgatgaaga |
20041697 |
T |
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