View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13091_low_8 (Length: 306)

Name: NF13091_low_8
Description: NF13091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13091_low_8
NF13091_low_8
[»] chr1 (9 HSPs)
chr1 (1-290)||(3378938-3379227)
chr1 (3-201)||(2006737-2006935)
chr1 (3-207)||(3372970-3373174)
chr1 (117-207)||(3341394-3341484)
chr1 (6-103)||(2012328-2012425)
chr1 (52-153)||(4334599-4334700)
chr1 (168-219)||(3341079-3341130)
chr1 (13-98)||(2010923-2011008)
chr1 (56-156)||(3362049-3362149)
[»] chr2 (3 HSPs)
chr2 (75-207)||(20953272-20953404)
chr2 (106-207)||(39274332-39274433)
chr2 (56-160)||(20927397-20927501)


Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 3379227 - 3378938
Alignment:
Q  1 ttctttgattgatttcagagctcaaataaatatttaaatcaacaaatacattagttaattggaaattgtttccaaagttaatatcctcaaatttaccacc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3379227 ttctttgattgatttcagagctcaaataaatatttaaatcaacaaatacattagttaattggaaattgtttccaaagttaatatcctcaaatttaccacc 3379128  T
Q  101 aattttaaaaaccttcagatttggtgcgtgagcattaatttgtgtgaaaccatcaacttcgaacaatgccaaatcttcaagtagagggcagccagatatc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  3379127 aattttaaaaaccttcagatttggtgcgtgagcattaatttgtgtgaaaccatcaacttccaacaatgccaaatcttcaagtagagggcagccagatatc 3379028  T
Q  201 atgtttttgaatgcatctttattcttgagccattgtaaccacttcaagactaagacttttcaaattcttgaagccttcaaatattgttgg 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3379027 atgtttttgaatgcatctttattcttgagccattgtaaccacttcaagactaagacttttcaaattcttgaagccttcaaatattgttgg 3378938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 3 - 201
Target Start/End: Complemental strand, 2006935 - 2006737
Alignment:
Q  3 ctttgattgatttcagagctcaaataaatatttaaatcaacaaatacattagttaattggaaattgtttccaaagttaatatcctcaaatttaccaccaa 102  Q
    ||||||||| |||||||| ||||||| | | |||||||||||||||||| |  |||||||||| ||||  ||||| |||||||||||||||||||||  |    
T  2006935 ctttgattgctttcagagttcaaatacaaacttaaatcaacaaatacataatctaattggaaagtgttgtcaaagctaatatcctcaaatttaccacaga 2006836  T
Q  103 ttttaaaaaccttcagatttggtgcgtgagcattaatttgtgtgaaaccatcaacttcgaacaatgccaaatcttcaagtagagggcagccagatatca 201  Q
    | |  |||||||| |||||||||||||||   || ||||| ||||||||||||| |||   ||||| ||||| |||||| |||||||| | ||||||||    
T  2006835 tatccaaaaccttaagatttggtgcgtgaatgtttatttgggtgaaaccatcaagttctgtcaatgtcaaattttcaagcagagggcaactagatatca 2006737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 3 - 207
Target Start/End: Complemental strand, 3373174 - 3372970
Alignment:
Q  3 ctttgattgatttcagagctcaaataaatatttaaatcaacaaatacattagttaattggaaattgtttccaaagttaatatcctcaaatttaccaccaa 102  Q
    ||||||||| |||  ||| ||| ||||||| ||||||||||| ||||  ||  || |||| || |||||  |||| ||||||||||||||||||||  ||    
T  3373174 ctttgattgcttttggagttcagataaatacttaaatcaacatatactgtatatatttgggaactgttttgaaagctaatatcctcaaatttaccataaa 3373075  T
Q  103 ttttaaaaaccttcagatttggtgcgtgagcattaatttgtgtgaaaccatcaacttcgaacaatgccaaatcttcaagtagagggcagccagatatcat 202  Q
     || ||||    | ||||||||||||||| |||||||||||| ||| ||||||| ||  | |||| ||||||  ||||||||||||||||||||||||||    
T  3373074 attgaaaagtactgagatttggtgcgtgaacattaatttgtgagaagccatcaattttcatcaataccaaatggtcaagtagagggcagccagatatcat 3372975  T
Q  203 gtttt 207  Q
    |||||    
T  3372974 gtttt 3372970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 117 - 207
Target Start/End: Complemental strand, 3341484 - 3341394
Alignment:
Q  117 agatttggtgcgtgagcattaatttgtgtgaaaccatcaacttcgaacaatgccaaatcttcaagtagagggcagccagatatcatgtttt 207  Q
    ||||||||||| |||  |||||| ||||| |||||||||| |||   ||||| ||| ||||||||||| ||||||| ||||||||||||||    
T  3341484 agatttggtgcatgaatattaatctgtgttaaaccatcaatttctttcaatgtcaattcttcaagtagggggcagctagatatcatgtttt 3341394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 103
Target Start/End: Complemental strand, 2012425 - 2012328
Alignment:
Q  6 tgattgatttcagagctcaaataaatatttaaatcaacaaatacattagttaattggaaattgtttccaaagttaatatcctcaaatttaccaccaat 103  Q
    |||||| |||||||| ||||| | | | |||||||||||| ||||| | ||||| || || ||||| ||||| |||||||||||||||||||| ||||    
T  2012425 tgattgctttcagagttcaaacacaaacttaaatcaacaattacataatttaataggtaagtgttttcaaagctaatatcctcaaatttaccaacaat 2012328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 153
Target Start/End: Original strand, 4334599 - 4334700
Alignment:
Q  52 tagttaattggaaattgtttccaaagttaatatcctcaaatttaccaccaattttaaaaaccttcagatttggtgcgtgagcattaatttgtgtgaaacc 151  Q
    |||||||||||||| |||| |||||| ||| | ||||||||| |||| | |||| ||||| ||| ||||||||||| |||  ||||||||| || |||||    
T  4334599 tagttaattggaaagtgttgccaaaggtaacaacctcaaattcaccaacgatttcaaaaaacttgagatttggtgcatgaatattaatttgcgttaaacc 4334698  T
Q  152 at 153  Q
    ||    
T  4334699 at 4334700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 219
Target Start/End: Complemental strand, 3341130 - 3341079
Alignment:
Q  168 gccaaatcttcaagtagagggcagccagatatcatgtttttgaatgcatctt 219  Q
    ||||| |||||||| |||||||||||||||||||||||||  ||||||||||    
T  3341130 gccaattcttcaagcagagggcagccagatatcatgttttcaaatgcatctt 3341079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 98
Target Start/End: Complemental strand, 2011008 - 2010923
Alignment:
Q  13 tttcagagctcaaataaatatttaaatcaacaaatacattagttaattggaaattgtttccaaagttaatatcctcaaatttacca 98  Q
    |||||||| ||||||| | | |||||||||||  ||||  |||||||| |||| |||||  |||| ||||||||||||||||||||    
T  2011008 tttcagagttcaaatacaaacttaaatcaacagctacacaagttaatttgaaagtgtttataaagctaatatcctcaaatttacca 2010923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 156
Target Start/End: Complemental strand, 3362149 - 3362049
Alignment:
Q  56 taattggaaattgtttccaaagttaatatcctcaaatttaccaccaattttaaaaaccttcagatttggtgcgtgagcattaatttgtgtgaaaccatca 155  Q
    |||| ||||| ||||| ||||| ||||||||||||||| |||||  || | |  |||||||||||||||| ||||   |||||||||  |||||||||||    
T  3362149 taatcggaaagtgttttcaaagctaatatcctcaaattcaccactgatatgagcaaccttcagatttggtccgtggatattaatttggctgaaaccatca 3362050  T
Q  156 a 156  Q
    |    
T  3362049 a 3362049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 75 - 207
Target Start/End: Complemental strand, 20953404 - 20953272
Alignment:
Q  75 aagttaatatcctcaaatttaccaccaattttaaaaaccttcagatttggtgcgtgagcattaatttgtgtgaaaccatcaacttcgaacaatgccaaat 174  Q
    ||||||||| ||||| |||  ||| ||||||  |||| ||| |||||||||||  ||  ||||||||| ||||||||||||||||| | ||||  ||| |    
T  20953404 aagttaataccctcatattcgccatcaatttccaaaaacttgagatttggtgcacgaatattaatttgggtgaaaccatcaacttctatcaatttcaatt 20953305  T
Q  175 cttcaagtagagggcagccagatatcatgtttt 207  Q
     |||||| |||||||||||||| |||| |||||    
T  20953304 tttcaagcagagggcagccagagatcaagtttt 20953272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 207
Target Start/End: Complemental strand, 39274433 - 39274332
Alignment:
Q  106 taaaaaccttcagatttggtgcgtgagcattaatttgtgtgaaaccatcaacttcgaacaatgccaaatcttcaagtagagggcagccagatatcatgtt 205  Q
    |||||| ||||||||||||||| |||  ||||| ||| || |||||||||  ||| | |||   ||||| |||||||||||||||||| |||||||| ||    
T  39274433 taaaaaacttcagatttggtgcatgaatattaacttgggttaaaccatcaggttctatcaaactcaaatattcaagtagagggcagccggatatcatttt 39274334  T
Q  206 tt 207  Q
    ||    
T  39274333 tt 39274332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 160
Target Start/End: Complemental strand, 20927501 - 20927397
Alignment:
Q  56 taattggaaattgtttccaaagttaatatcctcaaatttaccaccaattttaaaaaccttcagatttggtgcgtgagcattaatttgtgtgaaaccatca 155  Q
    |||||||||| | ||| ||||||||||||||||| ||| ||||   ||||| |||| ||| |||||||||||  |   ||||| ||| ||||| ||||||    
T  20927501 taattggaaagtattttcaaagttaatatcctcatattcaccattgattttcaaaaacttgagatttggtgcacggatattaacttgggtgaagccatca 20927402  T
Q  156 acttc 160  Q
    |||||    
T  20927401 acttc 20927397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University