View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13091_low_9 (Length: 304)
Name: NF13091_low_9
Description: NF13091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13091_low_9 |
 | |
|
| [»] chr3 (3 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 17 - 304
Target Start/End: Original strand, 33995251 - 33995540
Alignment:
| Q |
17 |
aaattggagtatgctgaattaactatcttagcgagtt-agcaggatagttatgagaacaatttatatcttatatataaaaacagtttaaccgcattctac |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33995251 |
aaattggagtatgctgaattaactatcttagcgagtttagcaggatagttatgagaacaatttatatcttatatataaaaacagtttaaccgcattctac |
33995350 |
T |
|
| Q |
116 |
ctatgattataaaacaacttatagataagtgtttatgataaacctatagtcaataagcaattaattaagctgattactcatacacaccctaaaaaagtga |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33995351 |
ctatgattataaaacaacttatagataagtgtttatgataaacctatagtcaataagcaattaattaagctgattactcatacacaccctaaaaaagtga |
33995450 |
T |
|
| Q |
216 |
attgagctaacttgcaaacttgttttttctgtaattggaaggttatatgatcaagtaatcagaacatg-ttttatgtatatataccgttg |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
33995451 |
attgagctaacttgcaaacttgttttttctgtaattggaaggttatatgatcaagtaatcagaacatgtttttatgtatatataccgttg |
33995540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 290
Target Start/End: Original strand, 34001737 - 34001828
Alignment:
| Q |
201 |
accctaaaaaagtga--attgagctaacttgcaaacttgttttttctgtaattggaaggttatatg-atcaagtaatcagaacatgttttatg |
290 |
Q |
| |
|
||||| ||||||||| |||| |||||||||| || | |||||| |||||||||||| ||||||| ||||||||||| |||||||||||||| |
|
|
| T |
34001737 |
acccttaaaaagtgataattgtgctaacttgcgaaatcatttttt-tgtaattggaagattatatgtatcaagtaatctgaacatgttttatg |
34001828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 48
Target Start/End: Original strand, 34001547 - 34001578
Alignment:
| Q |
17 |
aaattggagtatgctgaattaactatcttagc |
48 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
34001547 |
aaattggagtatgctgaattaactatcttagc |
34001578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University