View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13092_high_2 (Length: 629)
Name: NF13092_high_2
Description: NF13092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13092_high_2 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 551; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 1 - 629
Target Start/End: Original strand, 47178135 - 47178762
Alignment:
| Q |
1 |
tgtgatatcgaagtattgaaccattgccaaatggtgtgtaagtatttcggaggtatttaaaatgtgactgttgtagagcttgtatcattgtacaaaaatg |
100 |
Q |
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| T |
47178135 |
tgtgatatcgaagtattgaaccattgccaaatggtgtgtaagtattttggaggtatttaaaatgtgactgttgtagagcttgtatcattgtacaaaaatg |
47178234 |
T |
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| Q |
101 |
tcacgcataacttgtactattttggaggtatttctgtgcatacttgagcttgtacctgactgtactcattctactaggtgacacaattgtgatgatttca |
200 |
Q |
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| T |
47178235 |
tcacgcataacttgtactattttggaggtatttctgtgcatacttgagcttgtacctgactgtactcattctactaggtgacacaattgtgatgatttca |
47178334 |
T |
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| Q |
201 |
aaattgattctttatgaacgatttgaaatctatcttcaaagcatttcatcttcagttgtagattaagatttgcaacaaagtacttcaaataaattggtcc |
300 |
Q |
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| T |
47178335 |
aaattgattctttatgaatgatttgaaatctatcttcaaagcatttcatcttcagttgtagattaagatttgcaacaaagtacttcaaataaattggtcc |
47178434 |
T |
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| Q |
301 |
tatcatgagcaaataattggtctagatgatttgtgttaaacaaattacttcaaagaaattgatccaatgtagtttttccattggatgatttgatcatttg |
400 |
Q |
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|||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47178435 |
tatcattagcaaataattggtctagatgatttgtgttaaataaattacttcaaagaaattgatccaatgtagtttttccattggatgatttgatcatttg |
47178534 |
T |
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| Q |
401 |
agacgttgaccaaataaaccaaattt----attggtgattttcttggcttctaacaatgattttcatggattcggattcacggctgtcataaaaaacctg |
496 |
Q |
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| T |
47178535 |
agacgttgaccaaataaaccaaatttattaattggtgattttcttcgcttctaacaatgattttcatggattcggattcacggctgtcat-aaaaacctg |
47178633 |
T |
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| Q |
497 |
cggtcacctaatatatatccaccctatgatgaatccagcgctccatatcatttccatcttaactactaaatgaaaaatcgcaaaatgctagctgatggca |
596 |
Q |
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| T |
47178634 |
cagtcaccta----atatccaccctatgatgaatccagcgctccatatcatttccatcctaactaataaatgaaaaatcggaaaatgctagctgatggca |
47178729 |
T |
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| Q |
597 |
aagctcaaccattgtggtggtggtggtgatggt |
629 |
Q |
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| T |
47178730 |
aagctcaaccattgtggtgttggtggtgatggt |
47178762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 511 - 545
Target Start/End: Complemental strand, 47179050 - 47179016
Alignment:
| Q |
511 |
atatccaccctatgatgaatccagcgctccatatc |
545 |
Q |
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| T |
47179050 |
atatctaccctatgatgaatccagcgctccatatc |
47179016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 174 - 214
Target Start/End: Original strand, 27097759 - 27097799
Alignment:
| Q |
174 |
ctaggtgacacaattgtgatgatttcaaaattgattcttta |
214 |
Q |
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| T |
27097759 |
ctaggtgagacagttgtgatgatttcaaaattgattcttta |
27097799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 174 - 214
Target Start/End: Complemental strand, 27180544 - 27180504
Alignment:
| Q |
174 |
ctaggtgacacaattgtgatgatttcaaaattgattcttta |
214 |
Q |
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| T |
27180544 |
ctaggtgagacagttgtgatgatttcaaaattgattcttta |
27180504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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