View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13092_high_3 (Length: 498)
Name: NF13092_high_3
Description: NF13092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13092_high_3 |
 | |
|
| [»] scaffold0836 (4 HSPs) |
| | |
|
| [»] scaffold1236 (2 HSPs) |
| | |
|
| [»] scaffold0043 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 464; Significance: 0; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 1 - 483
Target Start/End: Original strand, 18029183 - 18029668
Alignment:
| Q |
1 |
ctcatactaacaaatatctctacatcaataccaatagtcttcccgtaagattaatagtttcagaaacattaataaaaatatatagaaag---ggtggata |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
18029183 |
ctcatactaacaaatatctctacatcaataccaatattcttcccgtaagattaatagtttcagaaacattaataaaaatatatagaaagaaaggtggata |
18029282 |
T |
|
| Q |
98 |
ccttgacaaagaaatcaccaatagatttaatatcaaactgggtgcaattaatgagttcaagtaccgccaaaggtggaaacgtcgtgcgatagtttttggt |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18029283 |
ccttgacaaagaaatcaccaatagatttaatatcaaactgggtgcaattaatgagttcaagtaccgccaaaggtggaaacgtcgtgcgatagtttttggt |
18029382 |
T |
|
| Q |
198 |
acacatgccagttaaacttgggagtctgcaaagcttgagacatttcaaagctggaagatgaggattgtagttttgatgatcatcactatcatcaatgtgc |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18029383 |
acacatgccagttaaacttgggagtctgcaaagcttgagacatttcaaagctggaagatgaggattgtagttttgatgatcatcactatcatcaatgtgc |
18029482 |
T |
|
| Q |
298 |
ccaaatatgtattctaatttcccacaattttcaacgtagagctcttttaattgtgggaagacaatattgtcgttgccactgccatctccaatgtctacta |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18029483 |
ccaaatatgtattctaatttcccacaattttcaacgtagagctcttttaattgtgggaagacaatattgtcgttgccactgccatctccaatgtctacta |
18029582 |
T |
|
| Q |
398 |
ttatatgcttcaattcatcacaactttcaacagtcaaggtctccaacaacattcctgaagcaacagataagataaatactgatttt |
483 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18029583 |
ttatatgcttcaattcatcacaacttttaacagtcaaggtctccaacaacattcctgaagcaacagataagataaatactgatttt |
18029668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 243 - 479
Target Start/End: Original strand, 27396118 - 27396354
Alignment:
| Q |
243 |
caaagctggaagatgaggattgtagttttgatgatcatcactatcatcaatgtgcccaaatatgtattctaatttcccacaattttcaacgtagagctct |
342 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||| | |
|
|
| T |
27396118 |
caaagctggaagatgaagattgtggttttgatgatcatcactatcatcaatgtgcccaaatatgtattctaatttcccacaatttttaacttcgagcctt |
27396217 |
T |
|
| Q |
343 |
tttaattgtgggaagacaatattgtcgttgccactgccatctccaatgtctactattatatgcttcaattcatcacaactttcaacagtcaaggtctcca |
442 |
Q |
| |
|
|| |||| |||||||||| ||||||| ||||||||| ||||||||||||||||| ||| ||||||||||||||||| |||||| ||||||| |||||| |
|
|
| T |
27396218 |
ttcaattttgggaagacactattgtcactgccactgctatctccaatgtctactactatgtgcttcaattcatcacagttttcaatagtcaagctctcca |
27396317 |
T |
|
| Q |
443 |
acaacattcctgaagcaacagataagataaatactga |
479 |
Q |
| |
|
||| ||||| ||||| | ||||| || ||||||||| |
|
|
| T |
27396318 |
acatcattcttgaagtcatagataggacaaatactga |
27396354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 261 - 443
Target Start/End: Original strand, 18714008 - 18714199
Alignment:
| Q |
261 |
attgtagttttgatgatcatcactatcatcaatgtgcccaaatatgtattctaatttcccacaattttcaacgtagagctcttttaattgtgggaagaca |
360 |
Q |
| |
|
||||| ||| || |||| ||||||| ||||||||||||||||||||||||| |||||| |||||| ||||||| |||||||||||||| |||||||||| |
|
|
| T |
18714008 |
attgtggttgtggtgatgatcactagcatcaatgtgcccaaatatgtattccaatttctcacaatcatcaacgtcgagctcttttaattttgggaagaca |
18714107 |
T |
|
| Q |
361 |
at---------attgtcgttgccactgccatctccaatgtctactattatatgcttcaattcatcacaactttcaacagtcaaggtctccaa |
443 |
Q |
| |
|
| ||||| |||||||||| | |||||||||||||||| |||| ||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
18714108 |
ttgtttccccaattgtttccaccactgccatattcaatgtctactattatgtgctccaattcatcacaattttcaatagtcaaggtctccaa |
18714199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 108 - 360
Target Start/End: Original strand, 18079745 - 18080009
Alignment:
| Q |
108 |
gaaatcaccaatagatttaatatcaaactgggtgcaattaatgagttcaagtaccgccaaaggtggaaacgtcgtgcgatagtttttggtacacatgcca |
207 |
Q |
| |
|
||||| |||||||| ||||||||||| | | ||||| | ||||| |||||||||| |||||||||| || |||||||| ||||||||||||||| |
|
|
| T |
18079745 |
gaaattaccaataggtttaatatcaaccacgaagcaatcatcgagtttaagtaccgccgaaggtggaaatgttgtgcgataacgtttggtacacatgccg |
18079844 |
T |
|
| Q |
208 |
gttaaacttgggagtctgcaaagcttgagacatttcaaagctggaagatga----gg--------attgtagttttgatgatcatcactatcatcaatgt |
295 |
Q |
| |
|
|||||||||| || || || ||||||||||||| ||||||||||| |||| || ||||| |||||||||||||||||| | | ||||| |
|
|
| T |
18079845 |
attaaacttggaagactccagagcttgagacattccaaagctggaaaatgaatacgggtcacctcattgtgattttgatgatcatcactagctttaatgt |
18079944 |
T |
|
| Q |
296 |
gcccaaatatgtattctaatttcccacaattttcaacgtagagctcttttaattgtgggaagaca |
360 |
Q |
| |
|
| |||| ||||||||| | ||| ||||||||||||||| |||||||||||| | ||| |||||| |
|
|
| T |
18079945 |
gtccaactatgtattccattttatcacaattttcaacgttgagctcttttaagtttggaaagaca |
18080009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 46 - 175
Target Start/End: Original strand, 27395996 - 27396128
Alignment:
| Q |
46 |
taagattaatagtttcagaaacattaataaaaatatatagaaag---ggtggataccttgacaaagaaatcaccaatagatttaatatcaaactgggtgc |
142 |
Q |
| |
|
|||||||| |||||||| |||||||||| ||||||||| ||||| ||||| ||||||||||| |||||||||||| |||||| | ||| |||| ||| |
|
|
| T |
27395996 |
taagattactagtttcacaaacattaatgaaaatatatggaaagatgggtgggtaccttgacaatcaaatcaccaatatatttaagaacaagctggctgc |
27396095 |
T |
|
| Q |
143 |
aattaatgagttcaagtaccgccaaaggtggaa |
175 |
Q |
| |
|
|||| |||||||||||| || |||||| ||||| |
|
|
| T |
27396096 |
aattgatgagttcaagttccaccaaagctggaa |
27396128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 187 - 360
Target Start/End: Complemental strand, 27372850 - 27372662
Alignment:
| Q |
187 |
tagtttttggtacacatgccagttaaacttgggagtctgcaaagcttgagacatttcaaagctggaagatga-----gg----------attgtagtttt |
271 |
Q |
| |
|
|||| ||||||||||||||| ||||| | ||||||| | ||||||||||||||||||||||||||||||| || ||||| ||||| |
|
|
| T |
27372850 |
tagtgtttggtacacatgccgactaaacgtcggagtctacgaagcttgagacatttcaaagctggaagatgaaagtgggtcacttcattattgtggtttt |
27372751 |
T |
|
| Q |
272 |
gatgatcatcactatcatcaatgtgcccaaatatgtattctaatttcccacaattttcaacgtagagctcttttaattgtgggaagaca |
360 |
Q |
| |
|
| |||| |||| || |||||||||||||||||||||||| |||||| ||||| |||||| | ||| |||||||||| |||||||||| |
|
|
| T |
27372750 |
ggtgatgatcagtagcatcaatgtgcccaaatatgtatttcaatttcgtacaatattcaacttcgagatcttttaattttgggaagaca |
27372662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 386 - 482
Target Start/End: Complemental strand, 28049309 - 28049213
Alignment:
| Q |
386 |
caatgtctactattatatgcttcaattcatcacaactttc-aacagtcaaggtctccaacaacattcctgaagcaacagataagataaatactgattt |
482 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||| ||| | || ||||||||||||||||||||| ||||||| ||||| ||| ||||||||||| |
|
|
| T |
28049309 |
caatgtctattattatgtgcttcaattcatcaca-cttgctaattctcaaggtctccaacaacattctagaagcaatagataggatgaatactgattt |
28049213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 443
Target Start/End: Complemental strand, 27345956 - 27345886
Alignment:
| Q |
373 |
ccactgccatctccaatgtctactattatatgcttcaattcatcacaactttcaacagtcaaggtctccaa |
443 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||| ||||||||||||| || || |||||||| |||||| |
|
|
| T |
27345956 |
ccactgccatctttaatgtctactattatgtgctccaattcatcacaatttctaatagtcaaggactccaa |
27345886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 88
Target Start/End: Original strand, 18079648 - 18079686
Alignment:
| Q |
50 |
attaatagtttcagaaacattaataaaaatatatagaaa |
88 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
18079648 |
attaataatttcacaaacattaataaaaatatatagaaa |
18079686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 482
Target Start/End: Complemental strand, 27911162 - 27911066
Alignment:
| Q |
386 |
caatgtctactattatatgcttcaattcatcacaactttc-aacagtcaaggtctccaacaacattcctgaagcaacagataagataaatactgattt |
482 |
Q |
| |
|
||||||||| ||| || ||||||||||| ||||| ||| | || ||||| ||||||||||||||||||| ||||| |||| ||| ||||||||||| |
|
|
| T |
27911162 |
caatgtctattataatgtgcttcaattcgtcaca-cttactaattgtcaaagtctccaacaacattcctggagcaatcgataggatgaatactgattt |
27911066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0836 (Bit Score: 61; Significance: 6e-26; HSPs: 4)
Name: scaffold0836
Description:
Target: scaffold0836; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 261 - 420
Target Start/End: Original strand, 4570 - 4732
Alignment:
| Q |
261 |
attgtagttttgatgatcatcactatcatcaatgtgcccaaatatgtattctaatttcccacaattttcaacgtagagctcttttaattgtgggaagaca |
360 |
Q |
| |
|
||||| |||||| |||| || | || ||||||||||||||||||||||||| |||||| |||||| ||||||| |||||||||||||| |||||||||| |
|
|
| T |
4570 |
attgtggttttggtgatgattagtagcatcaatgtgcccaaatatgtattccaatttctcacaatgatcaacgttgagctcttttaattttgggaagaca |
4669 |
T |
|
| Q |
361 |
at---attgtcgttgccactgccatctccaatgtctactattatatgcttcaattcatcacaa |
420 |
Q |
| |
|
| ||| | |||||||||||| |||||||||||||||| |||| ||||||||||||| |
|
|
| T |
4670 |
ttccaattatttccaccactgccatcttcaatgtctactattatgtgctccaattcatcacaa |
4732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0836; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 373 - 420
Target Start/End: Original strand, 1169 - 1216
Alignment:
| Q |
373 |
ccactgccatctccaatgtctactattatatgcttcaattcatcacaa |
420 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
1169 |
ccactgccatctccaatgtctactattatgtgctccaattcatcacaa |
1216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0836; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 261 - 360
Target Start/End: Original strand, 1048 - 1147
Alignment:
| Q |
261 |
attgtagttttgatgatcatcactatcatcaatgtgcccaaatatgtattctaatttcccacaattttcaacgtagagctcttttaattgtgggaagaca |
360 |
Q |
| |
|
||||| |||||| |||| ||| || ||||||||||||||||||||||||| | |||| |||||| ||| || |||| ||||||||| |||||||||| |
|
|
| T |
1048 |
attgtggttttggtgatgatctgtagcatcaatgtgcccaaatatgtattccactttctcacaataagcaatgtggagcacttttaattttgggaagaca |
1147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0836; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 165 - 205
Target Start/End: Original strand, 937 - 977
Alignment:
| Q |
165 |
caaaggtggaaacgtcgtgcgatagtttttggtacacatgc |
205 |
Q |
| |
|
||||||||| ||||| |||||||||| |||||||||||||| |
|
|
| T |
937 |
caaaggtggcaacgttgtgcgatagtgtttggtacacatgc |
977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1236 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: scaffold1236
Description:
Target: scaffold1236; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 261 - 443
Target Start/End: Complemental strand, 2036 - 1845
Alignment:
| Q |
261 |
attgtagttttgatgatcatcactatcatcaatgtgcccaaatatgtattctaatttcccacaattttcaacgtagagctcttttaattgtgggaagaca |
360 |
Q |
| |
|
||||| ||||| |||| |||| || ||||||||||||||||||||||||| |||||| |||||| ||||| | ||||| |||||||| |||||||||| |
|
|
| T |
2036 |
attgtggtttttgtgatgatcagtagcatcaatgtgcccaaatatgtattccaatttctcacaatcatcaactttgagcttttttaattttgggaagaca |
1937 |
T |
|
| Q |
361 |
at---------attgtcgttgccactgccatctccaatgtctactattatatgcttcaattcatcacaactttcaacagtcaaggtctccaa |
443 |
Q |
| |
|
| ||||| |||||||||||| |||||||||||||||| |||| ||||||||||||| |||||| |||||||| |||||| |
|
|
| T |
1936 |
ttgtttccccgattgtttccaccactgccatcttcaatgtctactattatgtgctccaattcatcacaattttcaatagtcaaggactccaa |
1845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1236; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 169 - 221
Target Start/End: Complemental strand, 2143 - 2091
Alignment:
| Q |
169 |
ggtggaaacgtcgtgcgatagtttttggtacacatgccagttaaacttgggag |
221 |
Q |
| |
|
||||| ||||| |||| ||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
2143 |
ggtggcaacgttgtgcaatagtgtttggtacacatgccgattaaacttgggag |
2091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 108 - 258
Target Start/End: Original strand, 70553 - 70703
Alignment:
| Q |
108 |
gaaatcaccaatagatttaatatcaaactgggtgcaattaatgagttcaagtaccgccaaaggtggaaacgtcgtgcgatagtttttggtacacatgcca |
207 |
Q |
| |
|
|||||||||||||||| ||||||||| || || ||| | ||||||| || | ||||||||| ||||| |||| ||||| ||||||||||||||| |
|
|
| T |
70553 |
gaaatcaccaatagatgtaatatcaaccttggagcacgctactagttcaactagtgtcaaaggtggcaacgttgtgcaatagtgtttggtacacatgccg |
70652 |
T |
|
| Q |
208 |
gttaaacttgggagtctgcaaagcttgagacatttcaaagctggaagatga |
258 |
Q |
| |
|
|||||||| ||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
70653 |
attaaactttggagtctatgaagcttgagatatttcaaagctggaagatga |
70703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 261 - 324
Target Start/End: Original strand, 70721 - 70784
Alignment:
| Q |
261 |
attgtagttttgatgatcatcactatcatcaatgtgcccaaatatgtattctaatttcccacaa |
324 |
Q |
| |
|
||||| |||||| |||| |||| || ||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
70721 |
attgtggttttggtgatgatcagtagcatcaatgtgcccaaatatgtattccaatttctcacaa |
70784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University