View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13092_high_4 (Length: 468)
Name: NF13092_high_4
Description: NF13092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13092_high_4 |
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| [»] scaffold0224 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 390; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 16 - 436
Target Start/End: Complemental strand, 44662845 - 44662424
Alignment:
| Q |
16 |
catattacagggatataatggagagtcaagaaggaaacaacatggcaatgacgttcattcctgatgcagaattgttgccaacggttgtagtcaatgccaa |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44662845 |
catattacagggatataatggagagtcaagaaggaaacaacatggcaatgactttcattcctgatgcagaattgttgccaacggttgtagtcaatgccaa |
44662746 |
T |
|
| Q |
116 |
gctctcaagagaagagaaacatgatgaagagaacattattggacttacaaaccttgatgtcacgaagtccataggtgaaacagatgccaatttggatgca |
215 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44662745 |
actctcaagagaagagaaacatgatgaagagaacattattggacttacaaaccttgatgtcacgaagtccataggtgaaacagatgccaatttggatgca |
44662646 |
T |
|
| Q |
216 |
gtaattgctcactatgctcagactataaccatgtacaacatgcgtaacttaggtaggcttttggtgcttcatatttttctatctttagatactattttat |
315 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44662645 |
ataattgctcactatgctcagactataaccaagtacaacatgcgtaacttaggtaggcttttggtgcttcatatttttctatctttagatactattttat |
44662546 |
T |
|
| Q |
316 |
accaaaaaataccttgtagacaattaattcaatctcttattgattgacatttataga-tgacttatcggattttgagtggtggtcgaatctgatcgtttg |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
44662545 |
accaaaaaataccttgtagacaattaattcaatctcttattgattgacatttatagaccgacttatcggattttgagtggtggtcgaatctgatcgtttg |
44662446 |
T |
|
| Q |
415 |
aagcatcgtaccttcgccggct |
436 |
Q |
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|||||||||||||||| ||||| |
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| T |
44662445 |
aagcatcgtaccttcgtcggct |
44662424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 192 - 303
Target Start/End: Complemental strand, 44685083 - 44684974
Alignment:
| Q |
192 |
gaaacagatgccaatttggatgcagtaattgctcactatgctcagactataaccatgtacaacatgcgtaacttaggtaggcttttggtgcttcatattt |
291 |
Q |
| |
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|||| ||||||||||||||||||| ||||||||| |||||| ||||||||| || ||||||| | ||||||||||||||| |||||||||||| |||| |
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| T |
44685083 |
gaaaaagatgccaatttggatgcaataattgctcgctatgcggagactataaacaagtacaacttacgtaacttaggtagggttttggtgcttc--attt |
44684986 |
T |
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| Q |
292 |
ttctatctttag |
303 |
Q |
| |
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|||||| ||||| |
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| T |
44684985 |
ttctatatttag |
44684974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 418
Target Start/End: Complemental strand, 42919751 - 42919709
Alignment:
| Q |
376 |
cttatcggattttgagtggtggtcgaatctgatcgtttgaagc |
418 |
Q |
| |
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|||||||||| ||||||||||| ||| |||||||||||||||| |
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| T |
42919751 |
cttatcggatgttgagtggtgggcgactctgatcgtttgaagc |
42919709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 89; Significance: 1e-42; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 16 - 306
Target Start/End: Original strand, 29339451 - 29339748
Alignment:
| Q |
16 |
catattacagggatataatggagagtcaagaaggaaacaacatggcaatgacgttcattcctgatgcagaattgttgccaacggttgtagtcaatgccaa |
115 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||||||| ||||| | |||||||||||||||| |||||||||| ||||| | ||||||||| |
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| T |
29339451 |
catattacagggatataatggagagcttagaaggaagcaacatgacaatggctatcattcctgatgcagagatgttgccaacagttgttggcaatgccaa |
29339550 |
T |
|
| Q |
116 |
gctctcaagagaagagaaacatg---------atgaagagaacattattggacttacaaaccttgatgtcacgaagtccataggtgaaacagatgccaat |
206 |
Q |
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|||||| ||||||||| ||||| |||||||| |||||| | ||||||| ||| ||| | |||| | | ||| |||||||| ||||||||| |
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| T |
29339551 |
actctcaggagaagagagacatgcaaatattcatgaagaggacattaatagacttaccaacattgctatcacacaatgcattggtgaaactgatgccaat |
29339650 |
T |
|
| Q |
207 |
ttggatgcagtaattgctcactatgctcagactataaccatgtacaacatgcgtaacttaggtaggcttttggtgcttcatatttttctatctttagata |
306 |
Q |
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|| |||||||||||| ||||||||| ||||||||| || ||||||| |||| ||||||||| || ||||| ||||| ||||||||||||||||||| |
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| T |
29339651 |
ttagatgcagtaattactcactatgtggagactataaacaagtacaacttgcgcaacttaggtgggtttttgatgctt--gatttttctatctttagata |
29339748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 16 - 297
Target Start/End: Original strand, 29352613 - 29352903
Alignment:
| Q |
16 |
catattacagggatataatggagagtcaagaaggaaacaacatggcaatgacgttcattcctgatgcagaattgttgccaacggttgtagtcaatgccaa |
115 |
Q |
| |
|
||||||||||||||| | ||||||| |||||||| ||||||| ||||| | |||||||||||||||| |||||||||| ||||| | || |||||| |
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| T |
29352613 |
catattacagggatacagtggagagcttagaaggaagcaacatgacaatggctatcattcctgatgcagagatgttgccaacagttgttggcattgccaa |
29352712 |
T |
|
| Q |
116 |
gctctcaagagaagagaaacatg---------atgaagagaacattattggacttacaaaccttgatgtcacgaagtccataggtgaaacagatgccaat |
206 |
Q |
| |
|
|||||| |||||||| ||||| |||||||| |||||| | ||||||| ||| ||| | |||| | | ||| |||||||| ||||||||| |
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| T |
29352713 |
actctcagaagaagagagacatgcaaatattcatgaagaggacattaatagacttaccaacattgctatcacacaatgcattggtgaaactgatgccaat |
29352812 |
T |
|
| Q |
207 |
ttggatgcagtaattgctcactatgctcagactataaccatgtacaacatgcgtaacttaggtaggcttttggtgcttcatatttttctat |
297 |
Q |
| |
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|| |||||||||||||||||||||| ||||||||| || |||||| || |||||||||||||| ||||| ||||| || ||| ||||| |
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| T |
29352813 |
ttagatgcagtaattgctcactatgtggagactataaacaaatacaacttgtgtaacttaggtaggtttttgatgcttgatttttctctat |
29352903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 419
Target Start/End: Original strand, 1799254 - 1799287
Alignment:
| Q |
386 |
tttgagtggtggtcgaatctgatcgtttgaagca |
419 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |
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| T |
1799254 |
tttgagtggtggtcgaagctgatcgtttgaagca |
1799287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 373 - 417
Target Start/End: Original strand, 1918454 - 1918498
Alignment:
| Q |
373 |
tgacttatcggattttgagtggtggtcgaatctgatcgtttgaag |
417 |
Q |
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|||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
1918454 |
tgacatatcggatgttgagtggtggtcgaatctgatcgtttgaag |
1918498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0224 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0224
Description:
Target: scaffold0224; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 418
Target Start/End: Original strand, 18580 - 18622
Alignment:
| Q |
376 |
cttatcggattttgagtggtggtcgaatctgatcgtttgaagc |
418 |
Q |
| |
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|||||||||| ||||||||||| ||| |||||||||||||||| |
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| T |
18580 |
cttatcggatgttgagtggtgggcgactctgatcgtttgaagc |
18622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 419
Target Start/End: Original strand, 23264820 - 23264849
Alignment:
| Q |
390 |
agtggtggtcgaatctgatcgtttgaagca |
419 |
Q |
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|
|||||||||||||||||||||||||||||| |
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|
| T |
23264820 |
agtggtggtcgaatctgatcgtttgaagca |
23264849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 387 - 419
Target Start/End: Original strand, 36796715 - 36796747
Alignment:
| Q |
387 |
ttgagtggtggtcgaatctgatcgtttgaagca |
419 |
Q |
| |
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|||||||||||||| |||||||||||||||||| |
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|
| T |
36796715 |
ttgagtggtggtcgcatctgatcgtttgaagca |
36796747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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