View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13092_high_6 (Length: 316)
Name: NF13092_high_6
Description: NF13092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13092_high_6 |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold0147 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 16 - 316
Target Start/End: Complemental strand, 43879189 - 43878889
Alignment:
| Q |
16 |
aatatctaaataaataggactcttgagacgagaataatagtgaagtgcttcttctatatctagtacttgttcaacatcacctgaatcattcatctccaat |
115 |
Q |
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| T |
43879189 |
aatatctaaataaataggactcttgagacgagaataatagtgaagtgcttcttctatatctagtacttgttcaacatcacctgaatcattcatctccaat |
43879090 |
T |
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| Q |
116 |
tccttcatcttcaatgccaattcattaacacatgaatcattcttcttattccctttgtcttttttctctttcactccattttctggactaatttgtttca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43879089 |
tccttcatcttcaatgccaattcattaacacatgaatcattcttcttattccctttgtcttttttctctttcactccattttctggactaatttgtttca |
43878990 |
T |
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| Q |
216 |
caaaactcacatgnnnnnnnncaatacttgcagcatcttccattgtttgttctcttgacacattcatgctaatttcaccattcctgtttattctattgag |
315 |
Q |
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| T |
43878989 |
caaaactcacatgttttttttcaatacttgcagcatcttccattgttttttctcttgacacattcatgctaatttcaccattcctgtttattctattgag |
43878890 |
T |
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| Q |
316 |
a |
316 |
Q |
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| T |
43878889 |
a |
43878889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 16 - 127
Target Start/End: Original strand, 7590 - 7701
Alignment:
| Q |
16 |
aatatctaaataaataggactcttgagacgagaataatagtgaagtgcttcttctatatctagtacttgttcaacatcacctgaatcattcatctccaat |
115 |
Q |
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| T |
7590 |
aatatctagataaaccggacttttaaggcgagaatagtagtgaagtgcttcttcgatgtctagtacgtgttcaagatcacctgaatccatcatatctaat |
7689 |
T |
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| Q |
116 |
tccttcatcttc |
127 |
Q |
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|||||||||||| |
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| T |
7690 |
tccttcatcttc |
7701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 44 - 127
Target Start/End: Original strand, 13202 - 13285
Alignment:
| Q |
44 |
cgagaataatagtgaagtgcttcttctatatctagtacttgttcaacatcacctgaatcattcatctccaattccttcatcttc |
127 |
Q |
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|||||||| |||||||||||||||||||| ||||| || ||||||| ||||||||| || |||| |||| || |||||||||| |
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| T |
13202 |
cgagaatagtagtgaagtgcttcttctatgtctagcacatgttcaagatcacctgattccatcatatccattttcttcatcttc |
13285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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