View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13092_low_1 (Length: 672)

Name: NF13092_low_1
Description: NF13092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13092_low_1
NF13092_low_1
[»] chr6 (2 HSPs)
chr6 (1-117)||(7373782-7373898)
chr6 (131-164)||(35129628-35129661)
[»] chr5 (4 HSPs)
chr5 (13-283)||(37075296-37075564)
chr5 (134-164)||(25215291-25215321)
chr5 (134-164)||(25279442-25279472)
chr5 (17-97)||(37411156-37411237)
[»] chr4 (4 HSPs)
chr4 (3-283)||(48517552-48517828)
chr4 (39-283)||(48514681-48514924)
chr4 (78-283)||(12704760-12704967)
chr4 (13-85)||(12703803-12703875)
[»] chr8 (3 HSPs)
chr8 (16-283)||(33293492-33293760)
chr8 (3-62)||(19488705-19488763)
chr8 (131-164)||(19954272-19954305)
[»] chr3 (4 HSPs)
chr3 (383-481)||(11766589-11766687)
chr3 (378-416)||(10442623-10442661)
chr3 (131-164)||(48432408-48432441)
chr3 (131-164)||(48435890-48435923)
[»] chr2 (2 HSPs)
chr2 (178-283)||(14918366-14918471)
chr2 (131-164)||(14104590-14104623)
[»] scaffold0018 (1 HSPs)
scaffold0018 (131-164)||(171777-171810)
[»] chr1 (3 HSPs)
chr1 (120-165)||(6789660-6789705)
chr1 (131-164)||(2493880-2493913)
chr1 (131-164)||(24159861-24159894)


Alignment Details
Target: chr6 (Bit Score: 113; Significance: 7e-57; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 7373898 - 7373782
Alignment:
Q  1 agttgagggtgtttggtttgatgagttctctttgtgcagagagtactcatagtcaagtttgaaaaggttgttttatcttggggacgacgaggtaagaaaa 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7373898 agttgagggtgtttggtttgatgagttctctttgtgcaaagagtactcatagtcaagtttgaaaaggttgttttatcttggggacgacgaggtaagaaaa 7373799  T
Q  101 atttgttgcatcattca 117  Q
    |||||||||||||||||    
T  7373798 atttgttgcatcattca 7373782  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 164
Target Start/End: Complemental strand, 35129661 - 35129628
Alignment:
Q  131 aacgtcttaaagagagcgacctagtctgcgactc 164  Q
    ||||||||||||||||||||||||||||||||||    
T  35129661 aacgtcttaaagagagcgacctagtctgcgactc 35129628  T

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Target: chr5 (Bit Score: 104; Significance: 2e-51; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 13 - 283
Target Start/End: Complemental strand, 37075564 - 37075296
Alignment:
Q  13 ttggtttgatgagttctctttgtgcagagagtactcatagtcaagtttgaaaaggttgttttatcttggggacgacgaggtaagaaaaatttgttgcatc 112  Q
    |||||||| ||||||||||||||||| |||||||||||| | ||||||| || |  ||||||||| ||| |||||||||  |||||| || ||||||| |    
T  37075564 ttggtttggtgagttctctttgtgcatagagtactcatacttaagtttgtaatgaatgttttatcctggagacgacgagccaagaaatatatgttgcacc 37075465  T
Q  113 attcatgcagaggcgcggaacgtcttaaagagagcgacctagtctgcgactcggcttatattgtgtatctaacaaaattattttgtgtgtgttagagttt 212  Q
    ||||| |||||| ||| ||||||||||||||||||||| || |||   |||| | | | ||| ||||||||||||| ||||||  | ||| ||| |||||    
T  37075464 attcaggcagagccgcagaacgtcttaaagagagcgacataatctataactcagttcaaattttgtatctaacaaagttattt--tatgttttaaagttt 37075367  T
Q  213 gattatttaaagaaatgatttaaagtattcgacgtatgtagcaacaatttaagtgttcaagaaatgttcca 283  Q
    |||| |||  ||||||||||| |||| |||||| |||| ||||||||||||||||||||||||||||||||    
T  37075366 gattctttgcagaaatgatttcaagtgttcgacatatgcagcaacaatttaagtgttcaagaaatgttcca 37075296  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 134 - 164
Target Start/End: Original strand, 25215291 - 25215321
Alignment:
Q  134 gtcttaaagagagcgacctagtctgcgactc 164  Q
    |||||||||||||||||||||||||||||||    
T  25215291 gtcttaaagagagcgacctagtctgcgactc 25215321  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 134 - 164
Target Start/End: Original strand, 25279442 - 25279472
Alignment:
Q  134 gtcttaaagagagcgacctagtctgcgactc 164  Q
    |||||||||||||||||||||||||||||||    
T  25279442 gtcttaaagagagcgacctagtctgcgactc 25279472  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 97
Target Start/End: Original strand, 37411156 - 37411237
Alignment:
Q  17 tttgatgagttctctttgtgcagagagtactcata-gtcaagtttgaaaaggttgttttatcttggggacgacgaggtaaga 97  Q
    |||| ||||||||||||||| ||||||||||||||  | ||||||   |||| ||||||||| ||| ||||| |||||||||    
T  37411156 tttggtgagttctctttgtgaagagagtactcatattttaagttttggaaggctgttttatcctggagacgatgaggtaaga 37411237  T

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Target: chr4 (Bit Score: 103; Significance: 7e-51; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 3 - 283
Target Start/End: Complemental strand, 48517828 - 48517552
Alignment:
Q  3 ttgagggtgtttggtttgatgagttctctttgtgcagagagtactcatagtcaagtttgaaaaggttgttttatcttggggacgacgaggtaagaaaaat 102  Q
    ||||||||||| ||||||  ||||| |||||||||| |||||| ||||| | |||||||||| || ||||||||| |||||||||||||| |||||| ||    
T  48517828 ttgagggtgtt-ggtttggagagttttctttgtgcaaagagtagtcatacttaagtttgaaagggctgttttatcctggggacgacgaggcaagaaagat 48517730  T
Q  103 ttgttgcatcattcatgcagaggcgcggaacgtcttaaagagagcgacctagtctgcgactcggcttatattgtgtatctaacaaaattattttgtgtgt 202  Q
     |||||||  ||||| |||||| ||| ||||||||||||||||||||||||||| ||||||| ||    ||| |||||||||  | ||||||||   |||    
T  48517729 ctgttgcacaattcaggcagagccgcagaacgtcttaaagagagcgacctagtccgcgactcagccccaattttgtatctaatgatattatttt---tgt 48517633  T
Q  203 gttagagtttgattatttaaagaaatgatttaaagtattcgacgtatgtagcaacaatttaagtgttcaagaaatgttcca 283  Q
    |||| ||||||||| |||  ||||||||||| |||| |||||| | |  | ||||||||||||||||||||||||||||||    
T  48517632 gttaaagtttgattctttgcagaaatgatttcaagtgttcgacatgttcatcaacaatttaagtgttcaagaaatgttcca 48517552  T

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Target: chr4; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 39 - 283
Target Start/End: Complemental strand, 48514924 - 48514681
Alignment:
Q  39 gagagtactcatagtcaagtttgaaaaggttgttttatcttggggacgacgaggtaagaaaaatttgttgcatcattcatgcagaggcgcggaacgtctt 138  Q
    |||||| |||||| |||| ||||||| |||||||| ||| |||||||||||||| |||||| || | ||| |  ||||| |||||| |||||||||||||    
T  48514924 gagagttctcatactcaaatttgaaagggttgtttcatcctggggacgacgaggcaagaaagatctattgtacaattcaggcagagccgcggaacgtctt 48514825  T
Q  139 aaagagagcgacctagtctgcgactcggcttatattgtgtatctaacaaaattattttgtgtgtgttagagtttgattatttaaagaaatgatttaaagt 238  Q
    |||||||||||||||||||||||||| ||    ||| |||||| ||| | |||||||| | ||||||| ||||||||| |||  ||||||||||| ||||    
T  48514824 aaagagagcgacctagtctgcgactcagccccaattttgtatcgaacgatattatttt-tttgtgttaaagtttgattctttgcagaaatgatttcaagt 48514726  T
Q  239 attcgacgtatgtagcaacaatttaagtgttcaagaaatgttcca 283  Q
     |||||| | |  | ||||||||||||||||||||||||| ||||    
T  48514725 gttcgacatgttcaacaacaatttaagtgttcaagaaatggtcca 48514681  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 78 - 283
Target Start/End: Original strand, 12704760 - 12704967
Alignment:
Q  78 ttggggacgacgaggtaagaaaaatttgttgcatcattcatgcagaggcgcggaacgtcttaaagagagcgacctagtctgcgactcggcttatattgtg 177  Q
    |||||||| |||||| |||||| |  ||||||| |||| | |||||| |||  || ||||||||||||||||||||||| ||||||| ||    ||| ||    
T  12704760 ttggggacaacgaggcaagaaataaatgttgcaccattgaggcagagccgcaaaaggtcttaaagagagcgacctagtccgcgactcagcccgaattttg 12704859  T
Q  178 tatctaacaaaattattttgtgtgtgttagagtttg-attatttaaagaaatgatttaaagtattcgacgtatgtagcaacaattt-aagtgttcaagaa 275  Q
    ||||||||| ||||||||||||||  ||  |||||| ||| |||  |||| || ||| |||| ||||||  ||| | |||| |||| |||||||||||||    
T  12704860 tatctaacataattattttgtgtgctttcaagtttgaattttttgcagaattgttttcaagtgttcgacagatgcaacaactatttaaagtgttcaagaa 12704959  T
Q  276 atgttcca 283  Q
    ||||||||    
T  12704960 atgttcca 12704967  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 12703803 - 12703875
Alignment:
Q  13 ttggtttgatgagttctctttgtgcagagagtactcatagtcaagtttgaaaaggttgttttatcttggggac 85  Q
    |||||||| ||| |||||||||||||||||||| ||||| | ||||||| || |||||||||||  |||||||    
T  12703803 ttggtttggtgaattctctttgtgcagagagtattcatacttaagtttggaagggttgttttattctggggac 12703875  T

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Target: chr8 (Bit Score: 93; Significance: 6e-45; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 16 - 283
Target Start/End: Complemental strand, 33293760 - 33293492
Alignment:
Q  16 gtttgatgagttctctttgtgcagagagtactcatagtcaagtttgaaaaggttgttttatcttggggacgacgaggtaagaaaaatttgttgcatcatt 115  Q
    ||||| || ||||||||||||||| |||||||||||  |||||||  ||||| ||||||||  ||| |||||||||| |||||| || ||||| |  |||    
T  33293760 gtttgctgggttctctttgtgcagtgagtactcatacacaagttttgaaaggctgttttattatggagacgacgaggcaagaaagatatgttgtactatt 33293661  T
Q  116 catgcagaggcgcggaacgtcttaaagagagcgacctagtctgcgactcggcttatattgtgtatctaacaaaattattttgtgtgtgtt-agagtttga 214  Q
    || |||||| | |||||| | ||||| |||| ||| ||||||||||||| ||  | ||| ||||| |||| |||||||||| |||||||| |||||||||    
T  33293660 caggcagagccacggaacatattaaaaagagtgacgtagtctgcgactcagcccaaattttgtatttaacgaaattattttttgtgtgttaagagtttga 33293561  T
Q  215 ttatttaaagaaatgatttaaagtattcgacgtatgtagcaacaatttaagtgttcaagaaatgttcca 283  Q
    || |||  |||||| |||| |||| ||||| ||||| ||||||| ||||||||||||||||||||||||    
T  33293560 ttttttgcagaaataatttcaagtgttcgatgtatgcagcaacattttaagtgttcaagaaatgttcca 33293492  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 62
Target Start/End: Original strand, 19488705 - 19488763
Alignment:
Q  3 ttgagggtgtttggtttgatgagttctctttgtgcagagagtactcatagtcaagtttga 62  Q
    ||||||||||| | |||| ||||||||| ||||||| | |||||||||||||||||||||    
T  19488705 ttgagggtgttggttttg-tgagttctcgttgtgcaaatagtactcatagtcaagtttga 19488763  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 164
Target Start/End: Complemental strand, 19954305 - 19954272
Alignment:
Q  131 aacgtcttaaagagagcgacctagtctgcgactc 164  Q
    ||||||||||||||||||| ||||||||||||||    
T  19954305 aacgtcttaaagagagcgatctagtctgcgactc 19954272  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 383 - 481
Target Start/End: Complemental strand, 11766687 - 11766589
Alignment:
Q  383 aaaaatcgtcaaaactaaaattaagaatgaaataggtatagcaaagtttgatgatgtgctttaccgttatcgtggagcttgctttgagtagtttcattt 481  Q
    ||||||||||||| |||||| ||||||||||||| | | | || ||||  |||||||| |||||||| ||||||||| ||||||| ||| |||||||||    
T  11766687 aaaaatcgtcaaacctaaaactaagaatgaaataagcaaaacatagttcaatgatgtgttttaccgtaatcgtggagtttgctttcagtggtttcattt 11766589  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 378 - 416
Target Start/End: Original strand, 10442623 - 10442661
Alignment:
Q  378 gaaacaaaaatcgtcaaaactaaaattaagaatgaaata 416  Q
    |||||| |||||||||||||||||| |||||||||||||    
T  10442623 gaaacagaaatcgtcaaaactaaaaataagaatgaaata 10442661  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 164
Target Start/End: Complemental strand, 48432441 - 48432408
Alignment:
Q  131 aacgtcttaaagagagcgacctagtctgcgactc 164  Q
    |||||||||||||||||||||||||| |||||||    
T  48432441 aacgtcttaaagagagcgacctagtccgcgactc 48432408  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 164
Target Start/End: Original strand, 48435890 - 48435923
Alignment:
Q  131 aacgtcttaaagagagcgacctagtctgcgactc 164  Q
    |||||||||||||||||||||||||| |||||||    
T  48435890 aacgtcttaaagagagcgacctagtccgcgactc 48435923  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 283
Target Start/End: Complemental strand, 14918471 - 14918366
Alignment:
Q  178 tatctaacaaaattattttgtgtgtgttagagtttgattatttaaagaaatgatttaaagtattcgacgtatgtagcaacaatttaa-gtgttcaagaaa 276  Q
    ||||||||||||||||||| ||||||||  ||| ||||| |||  |||||| |||  |||| |||||   ||| ||||||||||||| ||||||||||||    
T  14918471 tatctaacaaaattatttt-tgtgtgttcaagtatgattttttgcagaaataattccaagtgttcgatagatgcagcaacaatttaaagtgttcaagaaa 14918373  T
Q  277 tgttcca 283  Q
    |||||||    
T  14918372 tgttcca 14918366  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 164
Target Start/End: Complemental strand, 14104623 - 14104590
Alignment:
Q  131 aacgtcttaaagagagcgacctagtctgcgactc 164  Q
    |||||||||||||||||||||||||| |||||||    
T  14104623 aacgtcttaaagagagcgacctagtccgcgactc 14104590  T

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Target: scaffold0018 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 164
Target Start/End: Original strand, 171777 - 171810
Alignment:
Q  131 aacgtcttaaagagagcgacctagtctgcgactc 164  Q
    ||||||||||||||||||||||||||||||||||    
T  171777 aacgtcttaaagagagcgacctagtctgcgactc 171810  T

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Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 165
Target Start/End: Original strand, 6789660 - 6789705
Alignment:
Q  120 cagaggcgcggaacgtcttaaagagagcgacctagtctgcgactcg 165  Q
    ||||| ||| |||||||||||||||||| |||||||||||||||||    
T  6789660 cagagtcgcagaacgtcttaaagagagcaacctagtctgcgactcg 6789705  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 164
Target Start/End: Original strand, 2493880 - 2493913
Alignment:
Q  131 aacgtcttaaagagagcgacctagtctgcgactc 164  Q
    ||||||||||||||||||||||||| ||||||||    
T  2493880 aacgtcttaaagagagcgacctagtttgcgactc 2493913  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 164
Target Start/End: Original strand, 24159861 - 24159894
Alignment:
Q  131 aacgtcttaaagagagcgacctagtctgcgactc 164  Q
    |||||||||||||||||||||||||| |||||||    
T  24159861 aacgtcttaaagagagcgacctagtccgcgactc 24159894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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