View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13092_low_10 (Length: 257)
Name: NF13092_low_10
Description: NF13092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13092_low_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 8690852 - 8690606
Alignment:
| Q |
1 |
caaggttcgaacttgcatacatcaacttcagctataacattgttgacaatggaatcattaccaagtaacnnnnnnnngagatagtggtttacaagctctt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
8690852 |
caaggttcgaacttgcatacatcaacttcagctataacattgttgacaatggaatcattaccaagtaacttttttttgagatagtggtttacaagctctt |
8690753 |
T |
|
| Q |
101 |
catctgttggtcggaatctgaatccaacaggaacgtcatagttatgaggaaatgagtttgtcattgcttgttttgttttgaaaatgtgttttgcnnnnnn |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8690752 |
catctgttggtcggaatctgaatccaacaggaacgtcatagttatgaggaaatgagtttgtcattgcttgttttgttttgaaaatgtgttttgctttttt |
8690653 |
T |
|
| Q |
201 |
ngtagcaacaaaatgagacaaagagagactttctaataccacctatg |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8690652 |
tgtagcaacaaaatgagacaaagagagactttctaataccacctatg |
8690606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 13 - 134
Target Start/End: Complemental strand, 8705112 - 8704991
Alignment:
| Q |
13 |
ttgcatacatcaacttcagctataacattgttgacaatggaatcattaccaagtaacnnnnnnnngagatagtggtttacaagctcttcatctgttggtc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
8705112 |
ttgcatacatcaacttcagctataacattgtttacaatggaatcattaccaagtaacttttttttgagatagtggtttacaagctcttcatctgttggtc |
8705013 |
T |
|
| Q |
113 |
ggaatctgaatccaacaggaac |
134 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
8705012 |
ggaatctgaatccaacaggaac |
8704991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 8740200 - 8740138
Alignment:
| Q |
1 |
caaggttcgaacttgcatacatcaacttcagctataacattgttgacaatggaatcattacca |
63 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
8740200 |
caaggttcgtacttgcatacatcaacttcagctataacattgtttacaatggaatcattacca |
8740138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 8722201 - 8722069
Alignment:
| Q |
1 |
caaggttcgaacttgcatacatcaacttcagctataacattgttgacaatggaatcattaccaagtaacnnnnnnnngagatagtggtttacaagctctt |
100 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||| |||||||| |||| ||||| ||||||||| |||||||| |||||||||||||| |
|
|
| T |
8722201 |
caaggtttaaacttgaatacatcaacttcagctatgacattgttaacaaactcttcattgccaagtaacttgtttctgagatagtagtttacaagctctt |
8722102 |
T |
|
| Q |
101 |
catctgttggtcggaatctgaatccaacaggaa |
133 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |
|
|
| T |
8722101 |
gatctgttggatggaatctgaatccaacaggaa |
8722069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 8738633 - 8738501
Alignment:
| Q |
1 |
caaggttcgaacttgcatacatcaacttcagctataacattgttgacaatggaatcattaccaagtaacnnnnnnnngagatagtggtttacaagctctt |
100 |
Q |
| |
|
||||| || ||| |||| ||||||||||| ||||| |||||||| ||| |||| |||||||||||||| ||| ||||| || || || |||| |
|
|
| T |
8738633 |
caaggctcaaacctgcaaacatcaacttctgctatgacattgttaacatgggaaacattaccaagtaacttgttcttgaggtagtgattaactagttctt |
8738534 |
T |
|
| Q |
101 |
catctgttggtcggaatctgaatccaacaggaa |
133 |
Q |
| |
|
||| ||||||||||||||||||||| ||||||| |
|
|
| T |
8738533 |
catttgttggtcggaatctgaatccgacaggaa |
8738501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 65
Target Start/End: Complemental strand, 8723543 - 8723482
Alignment:
| Q |
4 |
ggttcgaacttgcatacatcaacttcagctataacattgttgacaatggaatcattaccaag |
65 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
8723543 |
ggttcgaacttgcgaatatcaacttcagctataacattgtttacaatggcgtcattaccaag |
8723482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University