View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13092_low_13 (Length: 236)
Name: NF13092_low_13
Description: NF13092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13092_low_13 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 8691163 - 8690943
Alignment:
| Q |
16 |
catgaatcacccagttgcttttaacaccaggaacacaaccattatagaacacaagtgttttctttatcccaataacattgtcagtgcctctaaccttaat |
115 |
Q |
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| T |
8691163 |
catgaatcacccagttgcttttaacaccaggaacacaaccattatagaacacaagtgttttttttatcccaataacattgtcagtgcctctaaccttaat |
8691064 |
T |
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| Q |
116 |
cttacggtcaagaccagtggctttccagtatccacactgtgtccttctgttaaaccttttactatttgcgtatttgtaatcgcgaggacaaaagaaaaac |
215 |
Q |
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| T |
8691063 |
cttacggtcaagaccagtggctttccagtatccacactgtgtccttctgttaaaccttttactatttgcgtatttgtaatcgcgaggacaaaagaaaaac |
8690964 |
T |
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| Q |
216 |
cattcgggatcattggatttt |
236 |
Q |
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| T |
8690963 |
cattcgggatcattggatttt |
8690943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 16 - 220
Target Start/End: Original strand, 14372284 - 14372488
Alignment:
| Q |
16 |
catgaatcacccagttgcttttaacaccaggaacacaaccattatagaacacaagtgttttctttatcccaataacattgtcagtgcctctaaccttaat |
115 |
Q |
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| T |
14372284 |
catgaatcacccggctgcttttaacaccaggaacacgaccattatagtaaacaagagttttcttaatcccaataatattattgctacccctaaccttaat |
14372383 |
T |
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| Q |
116 |
cttacggtcaagaccagtggctttccagtatccacactgtgtccttctgttaaaccttttactatttgcgtatttgtaatcgcgaggacaaaagaaaaac |
215 |
Q |
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| T |
14372384 |
cttccggtcctttccagtagctttccaaaaaccattttttgttgtccttttaaaccttttactctttgcatacttgtaatcaataggacacaagaaaaac |
14372483 |
T |
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| Q |
216 |
cattc |
220 |
Q |
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| T |
14372484 |
cattc |
14372488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 8705443 - 8705317
Alignment:
| Q |
16 |
catgaatcacccagttgcttttaacaccaggaacacaaccattatagaacacaagtgttttctttatcccaataacattgtcagtgcctctaaccttaat |
115 |
Q |
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|||||||||||||| ||||||||||||||||||||| |||||| ||| | ||||| || ||||| |||||||||| ||| | | || ||||||||||| |
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| T |
8705443 |
catgaatcacccagctgcttttaacaccaggaacacgaccattgtagtaaacaagagtcttcttaatcccaataatattattgctacccctaaccttaat |
8705344 |
T |
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| Q |
116 |
cttacggtcaagaccagtggctttcca |
142 |
Q |
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| T |
8705343 |
cttccggtccttaccagtagctttcca |
8705317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 220
Target Start/End: Complemental strand, 8738824 - 8738768
Alignment:
| Q |
164 |
gttaaaccttttactatttgcgtatttgtaatcgcgaggacaaaagaaaaaccattc |
220 |
Q |
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||||||| ||||||| |||||||| |||||||| | |||||| |||||||||||||| |
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| T |
8738824 |
gttaaactttttactctttgcgtacttgtaatcacaaggacacaagaaaaaccattc |
8738768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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