View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13092_low_5 (Length: 351)
Name: NF13092_low_5
Description: NF13092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13092_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 17 - 345
Target Start/End: Complemental strand, 4064363 - 4064036
Alignment:
| Q |
17 |
agtacttaaatcaaatatattttggtttggaatccaaactttgattgctacatgtatttctgctcccgccctttgtctccttcctttttattttagtatt |
116 |
Q |
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| T |
4064363 |
agtacttaaatcaaatatatttttgtttggaatccaaactttgattgctacatgtatttctgctcccgccctttgtctccttcctttt-attttagtatt |
4064265 |
T |
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| Q |
117 |
ctttctcatgtttatagcattnnnnnnnnngtgcatggtatgaatgagctatatagctttagtctccatatctttttattcgtactcagcttctgataaa |
216 |
Q |
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| T |
4064264 |
ctttctcatgtttatagcattaaaaaaaaagtgcatggtatgaatgagctacatagctttagtctccatatctttttattcgtactcagcttctgataaa |
4064165 |
T |
|
| Q |
217 |
atgcatttttctgcttgtagttgcaacaaaagttgtgttcctttgtcgagcaataaataaattgtctgcgaggctaacgaggagatcatcagagtccaca |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4064164 |
atgcatttttctgcttgtagttgcaacaaaagttgtgttcctttgtcgagcaataaataaattgtctgcgaggctaacgaggagatcatcagagtccaca |
4064065 |
T |
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| Q |
317 |
caaccacaacagtcatcctcatcatctgt |
345 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
4064064 |
caaccacaacagtcatcctcatcatctgt |
4064036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 119
Target Start/End: Complemental strand, 4058042 - 4057976
Alignment:
| Q |
52 |
aaactttgattgctacatgtatttctgctcccgccctttgtctccttcctttttattttagtattctt |
119 |
Q |
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| T |
4058042 |
aaactttgattgcgacgtgtatttctgctcccacccttggtctccttcc-ttttgttttagtattctt |
4057976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 265
Target Start/End: Complemental strand, 4057926 - 4057882
Alignment:
| Q |
221 |
atttttctgcttgtagttgcaacaaaagttgtgttcctttgtcga |
265 |
Q |
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| T |
4057926 |
atttttctgcttgtagatgcaaacaaagttgtgttccttcgtcga |
4057882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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