View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13092_low_8 (Length: 264)
Name: NF13092_low_8
Description: NF13092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13092_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 7e-95; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 17 - 247
Target Start/End: Complemental strand, 36000751 - 36000513
Alignment:
| Q |
17 |
gcgagatgaccaacaataacaatttattcccccaacaaagaggaagaggacttgaataatagatatttgcatgaatgtttcaaatcggtaagaatcttca |
116 |
Q |
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| T |
36000751 |
gcgagatgaccaacaataacaatttattcccctaacaaagaggaagaggacttgaataatagatatttgcatgaatgtttcaaatcggtaagaatcttca |
36000652 |
T |
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| Q |
117 |
cccta----ttcctaatttatttnnnnnnncaa----tttaatcatttcaatgaagaaaataattcttaagaaaatactcatgacagattctaaaaaatg |
208 |
Q |
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| T |
36000651 |
ccctagctattcctaatttatttaaaaaaaaaaaaaatttaatcatttcaatgaagaaaataattcttaagaaaatactcatgacagattctaaaaaatg |
36000552 |
T |
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| Q |
209 |
atgtcagatagataaattgcattaacattgtgttgaaac |
247 |
Q |
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| T |
36000551 |
atgtcagatagataaattgcattaacattgtgttgaaac |
36000513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 120
Target Start/End: Complemental strand, 36021861 - 36021803
Alignment:
| Q |
62 |
gaggacttgaataatagatatttgcatgaatgtttcaaatcggtaagaatcttcaccct |
120 |
Q |
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| T |
36021861 |
gaggacttgaataataaatctttgcatgaacgttcaaaatcggtatggatcttcaccct |
36021803 |
T |
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