View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13093_high_1 (Length: 427)
Name: NF13093_high_1
Description: NF13093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13093_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 193 - 410
Target Start/End: Original strand, 779672 - 779889
Alignment:
| Q |
193 |
aactattagtcatgatccttgtgttattgatgtcttgttgagtatttttgaannnnnnnnnnatgaatgataataattgtgtctgtttgacatttttata |
292 |
Q |
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| T |
779672 |
aactattagtcatgatccttgtgttattgatgtcttgttgagtattttagaatgttttttt-atgaatgataacaattgtgtctgtttgacatttttata |
779770 |
T |
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| Q |
293 |
tgattataacatgagttttgatactaattcttgagctgagaatgttagttgtttattaatttcatgg-nnnnnnnattgtaatggagagtcatagtcaat |
391 |
Q |
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| T |
779771 |
tgattataacatgagttttgatactaattcttgagctgagaatgttagttgtttattaatttcatggtttgttttattgtaatggagagtcatagtcaat |
779870 |
T |
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| Q |
392 |
aggataatgatctatgaaa |
410 |
Q |
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| T |
779871 |
aggataatgatctatgaaa |
779889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 39 - 131
Target Start/End: Original strand, 779518 - 779610
Alignment:
| Q |
39 |
aacgatgagaagtccggggttgggacggagaagaaggatggggaaagtggcttagcaggtaagaaaataacgaatttcattctttgccctagc |
131 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
779518 |
aacgatgagaagtccggggttgggacggagaagaaggatggggaaagtggcttagcaggtaagaaaataacgaatttcattctttgccctagc |
779610 |
T |
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