View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13094_high_3 (Length: 382)
Name: NF13094_high_3
Description: NF13094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13094_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 44 - 363
Target Start/End: Original strand, 22652884 - 22653203
Alignment:
| Q |
44 |
tcattgagatttatgatttcatcatgctttacgcacaaaacaacgataaaaaattacaacctgatggcttgagcaacttgaaggatctattaagcaacct |
143 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||| |||| |
|
|
| T |
22652884 |
tcattgagaattatgatttcatcatgctttacgcacaaaacaacgataaaaaattacaacctgatcgattgagcaatttgaaggatctattaagtaaccg |
22652983 |
T |
|
| Q |
144 |
tccaatacaacatgtgggtctaactacacaaaacccaatactttttgacccaccaaatcacatcgtacgtgagccaaaccaaccctagattttacaagat |
243 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22652984 |
tccaatataacatgtgggtctaactacacaaaacccaatactttttgacccaccatatcacatcgtacgtgagccaaaccaaccctagattttacaagat |
22653083 |
T |
|
| Q |
244 |
caaattccatccacatattttgttgttggtgatgcccaatgataaatgactctacacctagtagatccgagttcccaaatgtgaaacaataaactgaatc |
343 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
22653084 |
caaattccatccacatattctgttgttggtgatgcccaatgataaatgactctacacctagtagatccgagtttccaaatgtgaaacaataaactgaatc |
22653183 |
T |
|
| Q |
344 |
attccccacaacccgacctg |
363 |
Q |
| |
|
|||||| ||||||||||||| |
|
|
| T |
22653184 |
attccctacaacccgacctg |
22653203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University