View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13094_high_4 (Length: 254)

Name: NF13094_high_4
Description: NF13094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13094_high_4
NF13094_high_4
[»] chr8 (1 HSPs)
chr8 (19-172)||(9492146-9492299)
[»] scaffold0048 (3 HSPs)
scaffold0048 (21-172)||(64271-64422)
scaffold0048 (19-95)||(50974-51050)
scaffold0048 (118-172)||(51047-51101)
[»] chr4 (3 HSPs)
chr4 (19-172)||(42272406-42272559)
chr4 (19-172)||(40483631-40483783)
chr4 (110-172)||(55899828-55899890)
[»] chr2 (1 HSPs)
chr2 (19-172)||(8384275-8384428)
[»] chr1 (3 HSPs)
chr1 (66-172)||(19015237-19015343)
chr1 (45-111)||(36379581-36379648)
chr1 (62-172)||(4939212-4939321)
[»] scaffold0246 (1 HSPs)
scaffold0246 (19-172)||(21570-21722)
[»] chr7 (1 HSPs)
chr7 (62-164)||(44846341-44846443)
[»] chr3 (1 HSPs)
chr3 (19-172)||(15792633-15792783)
[»] chr5 (1 HSPs)
chr5 (68-126)||(40168164-40168222)


Alignment Details
Target: chr8 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 19 - 172
Target Start/End: Complemental strand, 9492299 - 9492146
Alignment:
Q  19 ggtggtcggaccctttagtttgcttaggtcttgactgatgttgtatcttgtatatactttgtaagacggtttgtcttttggggtggtctctttggtacat 118  Q
    |||||||||||||||||||||| ||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9492299 ggtggtcggaccctttagtttgtttgagtcttgactaatgttgtatcttgtatatactttgtaagacggtttgtcttttggggtggtctctttggtacat 9492200  T
Q  119 cttgtactagggagttctcttcgccattcttaatatatcccattttgaattctt 172  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9492199 cttgtactagggagttctcttcgccattcttaatatatcccattttgaattctt 9492146  T

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Target: scaffold0048 (Bit Score: 104; Significance: 6e-52; HSPs: 3)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 21 - 172
Target Start/End: Original strand, 64271 - 64422
Alignment:
Q  21 tggtcggaccctttagtttgcttaggtcttgactgatgttgtatcttgtatatactttgtaagacggtttgtcttttggggtggtctctttggtacatct 120  Q
    |||||||| |||||| |||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  64271 tggtcggatcctttactttgtttgggtcttgactgatgttgtatcttgtaaatactttgtaagacggtttgtcttttgaggtggtctctttggtacatct 64370  T
Q  121 tgtactagggagttctcttcgccattcttaatatatcccattttgaattctt 172  Q
    ||||||||||| ||||| |||||||| ||||||||  ||||||||| |||||    
T  64371 tgtactagggaattctcatcgccattattaatataatccattttgatttctt 64422  T

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Target: scaffold0048; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 50974 - 51050
Alignment:
Q  19 ggtggtcggaccctttagtttgcttaggtcttgactgatgttgtatcttgtatatactttgtaagacggtttgtctt 95  Q
    |||||||||| ||||||  |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  50974 ggtggtcggatcctttacattgcttgggtcttgactgatgttgtatcttgtaaatactttgtaagacggtttgtctt 51050  T

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Target: scaffold0048; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 51047 - 51101
Alignment:
Q  118 tcttgtactagggagttctcttcgccattcttaatatatcccattttgaattctt 172  Q
    |||| ||||||||||||||| |||||||| ||||||||  ||||||||| |||||    
T  51047 tcttatactagggagttctcatcgccattattaatataatccattttgatttctt 51101  T

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Target: chr4 (Bit Score: 82; Significance: 8e-39; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 19 - 172
Target Start/End: Complemental strand, 42272559 - 42272406
Alignment:
Q  19 ggtggtcggaccctttagtttgcttaggtcttgactgatgttgtatcttgtatatactttgtaagacggtttgtcttttggggtggtctctttggtacat 118  Q
    ||||||||||||| ||||| || || |||||||| |||| ||  || |||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  42272559 ggtggtcggaccccttagtatgtttgggtcttgattgatctttcattttgtatatactttgtatgacgctttgtcttttggggtggtctctttggtacat 42272460  T
Q  119 cttgtactagggagttctcttcgccattcttaatatatcccattttgaattctt 172  Q
    |||||||||||||| ||||  ||||||| |||||||||  |||||||| |||||    
T  42272459 cttgtactagggagctctcaccgccattgttaatatatttcattttgatttctt 42272406  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 172
Target Start/End: Complemental strand, 40483783 - 40483631
Alignment:
Q  19 ggtggtcggaccctttagtttgcttaggtcttgactgatgttgt-atcttgtatatactttgtaagacggtttgtcttttggggtggtctctttggtaca 117  Q
    ||||||||||||| ||| | || || ||||||||||||  || | |||||||| |||||||||||||||| |||||||||||||||| |||  | |||||    
T  40483783 ggtggtcggaccccttattgtgtttgggtcttgactgacattattatcttgtaaatactttgtaagacgggttgtcttttggggtgg-ctccgtagtaca 40483685  T
Q  118 tcttgtactagggagttctcttcgccattcttaatatatcccattttgaattctt 172  Q
     |||||||||| ||||| || |||||||| |||||||||| |||||||| |||||    
T  40483684 acttgtactagagagtt-tcatcgccattgttaatatatcacattttgatttctt 40483631  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 110 - 172
Target Start/End: Complemental strand, 55899890 - 55899828
Alignment:
Q  110 ttggtacatcttgtactagggagttctcttcgccattcttaatatatcccattttgaattctt 172  Q
    ||||||||||||||||||||||| ||||  ||||||| |||||||||||| |||||| |||||    
T  55899890 ttggtacatcttgtactagggagctctcaccgccattgttaatatatcccgttttgatttctt 55899828  T

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Target: chr2 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 19 - 172
Target Start/End: Complemental strand, 8384428 - 8384275
Alignment:
Q  19 ggtggtcggaccctttagtttgcttaggtcttgactgatgttgt-atcttgtatatactttgtaagacggtttgtcttttggggtggtctctttggtaca 117  Q
    ||||||||||||||| | | || |||||||||||||||| || | |||||||||||||||||||||| |||||||||||  ||||| |||||||||||||    
T  8384428 ggtggtcggaccctt-attatgtttaggtcttgactgatctttttatcttgtatatactttgtaagatggtttgtctttaagggtgatctctttggtaca 8384330  T
Q  118 tcttgtactagggagttctcttcgccattcttaatatatcccattttgaattctt 172  Q
    |||| |||||||||| || | |||||||| ||||||||||||||||||| |||||    
T  8384329 tcttatactagggagctcgcatcgccattgttaatatatcccattttgatttctt 8384275  T

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Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 66 - 172
Target Start/End: Original strand, 19015237 - 19015343
Alignment:
Q  66 ttgtatatactttgtaagacggtttgtcttttggggtggtctctttggtacatcttgtactagggagttctcttcgccattcttaatatatcccattttg 165  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||  ||||||| |||||||||| |||||||    
T  19015237 ttgtatatactttgtaagacggtttgtcttttggagtggtctctttgatacatcttgtactagggagctctcaccgccattattaatatatctcattttg 19015336  T
Q  166 aattctt 172  Q
    | |||||    
T  19015337 atttctt 19015343  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 45 - 111
Target Start/End: Complemental strand, 36379648 - 36379581
Alignment:
Q  45 ggtcttgactgatgttgt-atcttgtatatactttgtaagacggtttgtcttttggggtggtctcttt 111  Q
    ||||||||||||| || | ||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  36379648 ggtcttgactgatctttttatcttgtgtatactttgtaagacggtttgtcttttggggtggcctcttt 36379581  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 62 - 172
Target Start/End: Complemental strand, 4939321 - 4939212
Alignment:
Q  62 tatcttgtatatactttgtaagacggtttgtcttttggggtggtctctttggtacatcttgtactagggagttctcttcgccattcttaatatatcccat 161  Q
    |||||| || |||||||||||||| | ||| |||||||| ||| |||| |  |||| |||||||||||||| |||| |||||||| |||||||||| |||    
T  4939321 tatcttatacatactttgtaagacagcttg-cttttgggatggcctctctaatacaacttgtactagggagctctcatcgccattgttaatatatctcat 4939223  T
Q  162 tttgaattctt 172  Q
    ||||| |||||    
T  4939222 tttgatttctt 4939212  T

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Target: scaffold0246 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 172
Target Start/End: Complemental strand, 21722 - 21570
Alignment:
Q  19 ggtggtcggaccctttagtttgcttaggtcttgactgatgttgt-atcttgtatatactttgtaagacggtttgtcttttggggtggtctctttggtaca 117  Q
    ||||||||||||| ||| | || || ||||||||||||  || | |||||||| |||||||||||||||| |||||||||||||||| |||  | |||||    
T  21722 ggtggtcggaccccttattgtgtttgggtcttgactgacattattatcttgtaaatactttgtaagacgggttgtcttttggggtgg-ctccgtagtaca 21624  T
Q  118 tcttgtactagggagttctcttcgccattcttaatatatcccattttgaattctt 172  Q
     |||||||||| ||||| || |||||||| |||||||||| |||||||| |||||    
T  21623 acttgtactagagagtt-tcatcgccattgttaatatatcacattttgatttctt 21570  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 62 - 164
Target Start/End: Original strand, 44846341 - 44846443
Alignment:
Q  62 tatcttgtatatactttgtaagacggtttgtcttttggggtggtctctttggtacatcttgtactagggagttctcttcgccattcttaatatatcccat 161  Q
    ||||||||| |||||||||||||||| |||||||||||| ||| ||||||| |||| ||| ||||| |||||| || ||| |||| ||||||||||||||    
T  44846341 tatcttgtaaatactttgtaagacggattgtcttttgggatggcctctttgatacaacttatactatggagttttcatcgtcattgttaatatatcccat 44846440  T
Q  162 ttt 164  Q
    |||    
T  44846441 ttt 44846443  T

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Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 172
Target Start/End: Complemental strand, 15792783 - 15792633
Alignment:
Q  19 ggtggtcggaccctttagtttgcttaggtcttgactgatgttgtatcttgtatatactttgtaagacggtttgtcttttggggtggtctctttggtacat 118  Q
    |||||| |||||| |||||||| || |||||||||| || || | |  |||||||||  |||||||||||| ||||||||||||||||||||||||||||    
T  15792783 ggtggttggaccccttagtttgtttgggtcttgactaatctttttt--tgtatatacactgtaagacggtt-gtcttttggggtggtctctttggtacat 15792687  T
Q  119 cttgtactagggagttctcttcgccattcttaatatatcccattttgaattctt 172  Q
    |||||||| || |  ||||  | ||||  ||||||||| ||||||||| |||||    
T  15792686 cttgtactcggaaaatctcaccaccatagttaatatattccattttgagttctt 15792633  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 126
Target Start/End: Original strand, 40168164 - 40168222
Alignment:
Q  68 gtatatactttgtaagacggtttgtcttttggggtggtctctttggtacatcttgtact 126  Q
    ||||||||||| || |||  ||||| |||||| ||||||| ||||||||||||||||||    
T  40168164 gtatatactttatatgacactttgttttttggagtggtctttttggtacatcttgtact 40168222  T

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