View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13094_low_1 (Length: 478)
Name: NF13094_low_1
Description: NF13094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13094_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 414; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 7 - 445
Target Start/End: Original strand, 9490608 - 9491048
Alignment:
| Q |
7 |
tcgaagaatatgatattaaatagagttgaatttggtattgtaatggtatggaccagaaaaggccaaacctagttatctcatgaaatattgtctagcaaga |
106 |
Q |
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| T |
9490608 |
tcgaacaatatgatattaaatagagttgaatttggtattgtaatggtatggaccagaaaaggccaaacctagttatctcatgaaatattgtctagcaaga |
9490707 |
T |
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| Q |
107 |
aagttcaagaatggccccatatcaaggtctaaatataaacttgtatgaggttttgaccatagtagcataaaggatgataaattgtggaaatctaccccct |
206 |
Q |
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| T |
9490708 |
aagttcaagaatggccccatatcaaggtctaaatataaacttgtatgaggttttgaccatagtagcataaaggatgataaattgtggaaatctaccccct |
9490807 |
T |
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| Q |
207 |
aacatcatccttgaaaactcagaattctagaagcactgacagataggcacaacattgttggtagcatcgagggacacattcaaattagacaagttccacc |
306 |
Q |
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| T |
9490808 |
aacatcatccttgaaaactcagaattctagaagcactgacagataggcacaacattgttggtagcatcgagggacacattcaaattagacaagttccacc |
9490907 |
T |
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| Q |
307 |
tcccattttggattcagttgcataacaaactgaatatatcagaagcaaactcatgagt--aaagagtgtataactttgaagagacattataaatagagga |
404 |
Q |
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| T |
9490908 |
tcccattttggattcagttgcataacaaactgaatatatccgaagcaaactaatgagtaaaaagagcgtataactttgaagagacattataaatagagga |
9491007 |
T |
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| Q |
405 |
tcttctcctcatgtatgatcatgatattttttactcatttt |
445 |
Q |
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| T |
9491008 |
tcttctcctcatgtatgatcatgatattttttactcatttt |
9491048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 442 - 478
Target Start/End: Original strand, 9492008 - 9492044
Alignment:
| Q |
442 |
ttttttatccactatcacacctttgacatcggagtat |
478 |
Q |
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| T |
9492008 |
ttttctatccactatcacacctttgacatcggagtat |
9492044 |
T |
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