View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13094_low_2 (Length: 390)
Name: NF13094_low_2
Description: NF13094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13094_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 29552186 - 29551860
Alignment:
| Q |
1 |
caccttaacaagaacagtatcatcttctctagcatagatggtggggccagggaaattcccatttacagttacaatgggcttggttgaacacaatcttgtg |
100 |
Q |
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| T |
29552186 |
caccttaacaagaacagtatcatcttctctagcatagatggtggggccagggaaattcccatttatagttacaatgggtttggttgaacacaatcttgtg |
29552087 |
T |
|
| Q |
101 |
acattcttcatcaccacctgaattaacattaataatattacattatcaaccttaatggtcatgaagtagatataggagtcaacatgtattcttgaccaac |
200 |
Q |
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| T |
29552086 |
gcattcttcatcaccacctgaattaacaataataataaaacattatcaaccttaatggtcatgaagtagatataggagtc-----------------aac |
29552004 |
T |
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| Q |
201 |
aagaacaaaaataaagtctaagtactagtgcatgacatgtaacatctaccaaacttgagtgccttgcattgctcaacaattaatacaatttgaagatgac |
300 |
Q |
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| T |
29552003 |
aagaacaaaaataaagtcta------agtgcatgacatgtaacatctaccaaacttgagtgccttgcattgctcaaaaattaatacaatttgaagatgac |
29551910 |
T |
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| Q |
301 |
aattggtagacaaacttaacagaacaatggtttggtacatattagtataa |
350 |
Q |
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| T |
29551909 |
aattggtagacaaacttaacagaacaatggtttggtacatattagtataa |
29551860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 11 - 120
Target Start/End: Complemental strand, 25091342 - 25091233
Alignment:
| Q |
11 |
agaacagtatcatcttctctagcatagatggtggggccagggaaattcccatttacagttacaatgggcttggttgaacacaatcttgtgacattcttca |
110 |
Q |
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|||||| | ||||||||||| |||||||| || || |||||||| || |||||||| |||||||| || ||||||||||||||||||||| |||| |||| |
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| T |
25091342 |
agaacattgtcatcttctctggcatagattgtaggaccagggaactttccatttactgttacaattggtttggttgaacacaatcttgtggcatttttca |
25091243 |
T |
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| Q |
111 |
tcaccacctg |
120 |
Q |
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| T |
25091242 |
tcacaacctg |
25091233 |
T |
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