View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13095_high_11 (Length: 238)

Name: NF13095_high_11
Description: NF13095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13095_high_11
NF13095_high_11
[»] chr3 (12 HSPs)
chr3 (18-221)||(8472348-8472551)
chr3 (18-210)||(6837922-6838114)
chr3 (43-106)||(8568015-8568078)
chr3 (42-128)||(6266566-6266652)
chr3 (42-128)||(6246183-6246269)
chr3 (46-163)||(6917962-6918079)
chr3 (42-106)||(13269660-13269724)
chr3 (42-130)||(6143192-6143280)
chr3 (42-98)||(6849845-6849901)
chr3 (42-130)||(7750974-7751062)
chr3 (42-104)||(6238566-6238628)
chr3 (42-110)||(6900972-6901040)
[»] chr7 (1 HSPs)
chr7 (18-216)||(6572334-6572532)
[»] scaffold0425 (1 HSPs)
scaffold0425 (42-98)||(12953-13009)


Alignment Details
Target: chr3 (Bit Score: 144; Significance: 7e-76; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 8472551 - 8472348
Alignment:
Q  18 ctcttcaataaaaagttgattaacaaacttgaaatcacactgaattctatcaatcaattgttggatgatgcagagacaaagaagtaccataaccaaaatg 117  Q
    |||| ||||||||||||| |||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  8472551 ctctgcaataaaaagttggttaaaaaactcgaaatcacattgaattctatcaatcaattgttggatgatgcagagacaaagaagtaccagaaccaaaatg 8472452  T
Q  118 ttaagaattggctcgatcgtcttagacacgaggtgtatgaagtagatcagttgttagatgagtttgatacacatgtacaacgaaagagcaaggttcaaca 217  Q
    ||||||||||||| |||||||| | ||| ||||| |||||||||||||| ||||| |||||||||||||||  |||||||||||||||||||||||||||    
T  8472451 ttaagaattggcttgatcgtctaaaacatgaggtatatgaagtagatcaattgttggatgagtttgatacaagtgtacaacgaaagagcaaggttcaaca 8472352  T
Q  218 cttc 221  Q
    ||||    
T  8472351 cttc 8472348  T

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Target: chr3; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 6837922 - 6838114
Alignment:
Q  18 ctcttcaataaaaagttgattaacaaacttgaaatcacactgaattctatcaatcaattgttggatgatgcagagacaaagaagtaccataaccaaaatg 117  Q
    |||||||||||||||||| || | ||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  6837922 ctcttcaataaaaagttggttgagaaacttgaagtcacactgaattctatcgatcaattgttgaatgatgcagagacaaagaagtaccaaaaccaaaatg 6838021  T
Q  118 ttaagaattggctcgatcgtcttagacacgaggtgtatgaagtagatcagttgttagatgagtttgatacacatgtacaacgaaagagcaagg 210  Q
    | ||||| ||| | |||  ||| | ||| ||||| |||||||||||||| ||||| |||||| |||||||| ||||| |||  ||||||||||    
T  6838022 tgaagaagtggtttgataatctaaaacatgaggtatatgaagtagatcaattgttggatgagattgatacaaatgtaaaactcaagagcaagg 6838114  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 43 - 106
Target Start/End: Original strand, 8568015 - 8568078
Alignment:
Q  43 aacttgaaatcacactgaattctatcaatcaattgttggatgatgcagagacaaagaagtacca 106  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||| |||||| |||||||    
T  8568015 aacttgaaatcacacttaattctataaatcaattgttggatgatgcagaaacaaagcagtacca 8568078  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 42 - 128
Target Start/End: Complemental strand, 6266652 - 6266566
Alignment:
Q  42 aaacttgaaatcacactgaattctatcaatcaattgttggatgatgcagagacaaagaagtaccataaccaaaatgttaagaattgg 128  Q
    ||||||||||||||||||  ||||||||||||| || ||||||| |||||||||||||||||| | || ||||| || |||||||||    
T  6266652 aaacttgaaatcacactggtttctatcaatcaagtgctggatgacgcagagacaaagaagtacgagaatcaaaacgtgaagaattgg 6266566  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 128
Target Start/End: Complemental strand, 6246269 - 6246183
Alignment:
Q  42 aaacttgaaatcacactgaattctatcaatcaattgttggatgatgcagagacaaagaagtaccataaccaaaatgttaagaattgg 128  Q
    ||||||||||||||| ||  ||||||||||||| || ||||||| |||||||||||||||||| | || ||||| || |||||||||    
T  6246269 aaacttgaaatcacattggtttctatcaatcaagtgctggatgacgcagagacaaagaagtacgagaatcaaaacgtgaagaattgg 6246183  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 163
Target Start/End: Complemental strand, 6918079 - 6917962
Alignment:
Q  46 ttgaaatcacactgaattctatcaatcaattgttggatgatgcagagacaaagaagtaccataaccaaaatgttaagaattggctcgatcgtcttagaca 145  Q
    ||||||||||| || ||||||||||| || || | ||||||||||||  |||| ||||||| |||| | | || ||||||||||| |||  ||| | |||    
T  6918079 ttgaaatcacattggattctatcaatgaagtgcttgatgatgcagaggtaaagcagtaccaaaaccgagacgtgaagaattggcttgatgatctcaaaca 6917980  T
Q  146 cgaggtgtatgaagtaga 163  Q
    |||||| |||||||||||    
T  6917979 cgaggtatatgaagtaga 6917962  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 106
Target Start/End: Original strand, 13269660 - 13269724
Alignment:
Q  42 aaacttgaaatcacactgaattctatcaatcaattgttggatgatgcagagacaaagaagtacca 106  Q
    |||||||||||||||||||| ||||||||| | ||| ||||||| |||||||| ||| |||||||    
T  13269660 aaacttgaaatcacactgaagtctatcaattatttgctggatgacgcagagactaagcagtacca 13269724  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 130
Target Start/End: Complemental strand, 6143280 - 6143192
Alignment:
Q  42 aaacttgaaatcacactgaattctatcaatcaattgttggatgatgcagagacaaagaagtaccataaccaaaatgttaagaattggct 130  Q
    ||||||||||||||||| || ||||||||| |  || |||||||  ||||||||||| ||||||| || ||||  || |||||||||||    
T  6143280 aaacttgaaatcacactcaagtctatcaattatgtgctggatgacacagagacaaagcagtaccaaaatcaaaccgtgaagaattggct 6143192  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 98
Target Start/End: Original strand, 6849845 - 6849901
Alignment:
Q  42 aaacttgaaatcacactgaattctatcaatcaattgttggatgatgcagagacaaag 98  Q
    ||||||||||||| |||||||||||||||| ||  | |||||| |||||||||||||    
T  6849845 aaacttgaaatcaaactgaattctatcaatgaagagctggatgttgcagagacaaag 6849901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 130
Target Start/End: Complemental strand, 7751062 - 7750974
Alignment:
Q  42 aaacttgaaatcacactgaattctatcaatcaattgttggatgatgcagagacaaagaagtaccataaccaaaatgttaagaattggct 130  Q
    |||||||||||||||||  ||||||||||| || |  ||||||||||||| | |||| |||||||  ||| ||| || |||||||||||    
T  7751062 aaacttgaaatcacactagattctatcaatgaagtactggatgatgcagatataaaggagtaccaacaccgaaacgtgaagaattggct 7750974  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 104
Target Start/End: Complemental strand, 6238628 - 6238566
Alignment:
Q  42 aaacttgaaatcacactgaattctatcaatcaattgttggatgatgcagagacaaagaagtac 104  Q
    |||||||||||||||||||| ||||||||| || || ||||||| | ||||||| || |||||    
T  6238628 aaacttgaaatcacactgaagtctatcaataaagtgctggatgacgaagagacagagtagtac 6238566  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 110
Target Start/End: Complemental strand, 6901040 - 6900972
Alignment:
Q  42 aaacttgaaatcacactgaattctatcaatcaattgttggatgatgcagagacaaagaagtaccataac 110  Q
    ||||||||||||||||||  |||||||||| || || ||||||| ||| || ||||| |||||| ||||    
T  6901040 aaacttgaaatcacactggtttctatcaataaagtgctggatgacgcaaaggcaaagcagtaccgtaac 6900972  T

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Target: chr7 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 18 - 216
Target Start/End: Original strand, 6572334 - 6572532
Alignment:
Q  18 ctcttcaataaaaagttgattaacaaacttgaaatcacactgaattctatcaatcaattgttggatgatgcagagacaaagaagtaccataaccaaaatg 117  Q
    ||||||||||||  |||| || | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||| |||| ||| |    
T  6572334 ctcttcaataaagggttggttgaaaaacttgaaatcacaatgaattctatcaatcaattgttggatgatgcagagacaaaacagtaccaaaacccaaacg 6572433  T
Q  118 ttaagaattggctcgatcgtcttagacacgaggtgtatgaagtagatcagttgttagatgagtttgatacacatgtacaacgaaagagcaaggttcaac 216  Q
    | |||| |||||| |||||||| | ||| ||||| |||||||||||||| ||||| |||||| ||| |||| |   ||||||||||| |||||| ||||    
T  6572434 tgaagatttggcttgatcgtctaaaacatgaggtatatgaagtagatcaattgttggatgagattgctacaaactcacaacgaaagatcaaggtgcaac 6572532  T

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Target: scaffold0425 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 98
Target Start/End: Original strand, 12953 - 13009
Alignment:
Q  42 aaacttgaaatcacactgaattctatcaatcaattgttggatgatgcagagacaaag 98  Q
    ||||||||||||| |||||||||||||||| ||  | |||||| |||||||||||||    
T  12953 aaacttgaaatcaaactgaattctatcaatgaagagctggatgttgcagagacaaag 13009  T

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