View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13095_high_2 (Length: 555)
Name: NF13095_high_2
Description: NF13095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13095_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 511; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 17 - 539
Target Start/End: Original strand, 42535182 - 42535704
Alignment:
| Q |
17 |
acagatcaacacgcattgaagacataaggagggccaagccggatgccggttttgatctttttcagtcagagtcttttgttgtgaaatttgatgatgttaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42535182 |
acagatcaacacgcattgaagacataaggagggccaagccggatgccggttttgatctttttcagtcagagtcttttgttgtgaaatttgatgatgttaa |
42535281 |
T |
|
| Q |
117 |
tgccaaggtcctaacctactctccgcaagatagtatattcaaggtttttgatcttaaaaactacacttttctatacttgttttcatttagcaatgttgat |
216 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42535282 |
tgccaaggtcctaacctactctgcgcaagatagtatattcaaggtttttgatcttaaaaactacacttttctatacttgttttcatttagcaatgttgat |
42535381 |
T |
|
| Q |
217 |
tggatcaacatcacttctggcatcatgttattcatcttcaaaagaacaagtgaccatattccagtcaagattatatccattgaggatggcaaagttctca |
316 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42535382 |
tggatcaacatcagttctggcatcatgttattcatcttcaaaagaacaagtgaccatattccagtcaagattatatccattgaggatggcaaagttctca |
42535481 |
T |
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| Q |
317 |
aacaattcaattgtctacattggaatagggaggtagacatgattgtgtgcaatgaaaagcttctagtcatgcaggacaatgtcaaccttcagattcttga |
416 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42535482 |
aacaattcaattgtctacattagaatagggaggtagacatgattgtgtgcaatgaaaagcttctagtcatgcaggacaatgtcaaccttcagattcttga |
42535581 |
T |
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| Q |
417 |
cttaccaagttttaagattatggcatcggtaagcagaactgagttcatgaacccatcaagatttatctttctatgcaagaaacagttattccttactctc |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42535582 |
cttaccaagttttaagattatggcatcggtaagcagaactgagttcatgaacccatcaagatttatctttctatgcaagaaacagttattccttactctc |
42535681 |
T |
|
| Q |
517 |
aaaaaccaaacaaattttgtatg |
539 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
42535682 |
aaaaaccaaacaaattttgtatg |
42535704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 17 - 539
Target Start/End: Original strand, 42529460 - 42529985
Alignment:
| Q |
17 |
acagatcaacacgcattgaagacataaggagggccaagccggatgccggttttgatctttttcagtcagagtcttttgttgtgaaatttgatgatgttaa |
116 |
Q |
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||||||||||| | |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
42529460 |
acagatcaacaagtattgaatacacaaggagggccaagccggatgccggttttgatctttttcagtcagattcttttgttgtaaaatttgatgatgttaa |
42529559 |
T |
|
| Q |
117 |
tgccaaggtcctaacctactctccgcaagatagtatattcaaggtttttgatcttaaaaactacacttttctatacttgttttcatttagcaatgttgat |
216 |
Q |
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|| ||||||| ||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| | |
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| T |
42529560 |
tgtcaaggtcttaacctactctgcgcaagatagtatgttcaaggtttttgaccttaaaaactacacttttctatactcgttttcatttagcaatgttcaa |
42529659 |
T |
|
| Q |
217 |
tggatcaacatcacttctggcatcatgttattcatcttcaaaagaacaagtgaccatattccagtcaagattatatccattgaggatggcaaagttctca |
316 |
Q |
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|||||||||||| ||||||||||||||||||||||||| |||||| |||||| ||||||||| |||||||||||||||||||||||||| |||||||| |
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| T |
42529660 |
cggatcaacatcagttctggcatcatgttattcatcttccaaagaagaagtgatcatattccaatcaagattatatccattgaggatggcttagttctca |
42529759 |
T |
|
| Q |
317 |
aacaattcaattgtctacattggaatagggaggtagacatgattgtg---tgcaatgaaaagcttctagtcatgcaggacaatgtcaaccttcagattct |
413 |
Q |
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|| |||||| || |||||||||||||| |||||||||| | || ||| ||||||||||||||| |||||| ||||||||||||||||||||||||||| |
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| T |
42529760 |
aagaattcagttatctacattggaataaggaggtagacttcatagtgcaatgcaatgaaaagcttttagtcaagcaggacaatgtcaaccttcagattct |
42529859 |
T |
|
| Q |
414 |
tgacttaccaagttttaagattatggcatcggtaagcagaactgagttcatgaacccatcaagatttatctttctatgcaagaaacagttattccttact |
513 |
Q |
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|||||||| ||||| |||| | | | | ||||||||||||||||||||||| ||| | | ||||||| |||| | ||||||| |||||||||||||| |
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| T |
42529860 |
tgacttacaaagttctaagctgacgccggtagtaagcagaactgagttcatgaaaccaactatatttatccttctttacaagaaagagttattccttact |
42529959 |
T |
|
| Q |
514 |
ctcaaaaaccaaacaaattttgtatg |
539 |
Q |
| |
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|||| ||||| ||||| || |||||| |
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| T |
42529960 |
ctcataaaccgaacaatttctgtatg |
42529985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 233 - 416
Target Start/End: Original strand, 27824597 - 27824786
Alignment:
| Q |
233 |
ctggcatcatgttattcatcttcaaaagaacaagtgaccatattccagtcaagattatatccattgaggatggcaaagttctcaaacaattcaattgtct |
332 |
Q |
| |
|
|||||||||||||||| || ||||| ||| |||||| ||||||||| | || |||||||||||||||||||||| |||||||||| ||||||| ||| |
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| T |
27824597 |
ctggcatcatgttattaatattcaatagagcaagtggtcatattccactgaaaattatatccattgaggatggcacagttctcaaagcattcaatcatct |
27824696 |
T |
|
| Q |
333 |
a---cattggaatagggaggtagacatgattgtg---tgcaatgaaaagcttctagtcatgcaggacaatgtcaaccttcagattcttga |
416 |
Q |
| |
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| ||| |||||| | |||| ||| | || | | | |||||||||||||||||||| |||||| |||| |||||||| |||||||| |
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| T |
27824697 |
actccatcggaataagaaggtggacttcatagagcaattcaatgaaaagcttctagtcaagcaggaaaatgagaaccttcaaattcttga |
27824786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 95 - 149
Target Start/End: Original strand, 27822153 - 27822207
Alignment:
| Q |
95 |
ttgtgaaatttgatgatgttaatgccaaggtcctaacctactctccgcaagatag |
149 |
Q |
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||||| ||||||||||||||||||| ||||||||||| |||||| |||| ||||| |
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| T |
27822153 |
ttgtggaatttgatgatgttaatgcaaaggtcctaacatactctgcgcaggatag |
27822207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 38 - 92
Target Start/End: Original strand, 27822084 - 27822138
Alignment:
| Q |
38 |
acataaggagggccaagccggatgccggttttgatctttttcagtcagagtcttt |
92 |
Q |
| |
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|||||| |||||||||||||||||| |||||| |||||| ||||| |||||||| |
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| T |
27822084 |
acataaagagggccaagccggatgctggttttcctcttttccagtccgagtcttt |
27822138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 193
Target Start/End: Original strand, 27822302 - 27822347
Alignment:
| Q |
148 |
agtatattcaaggtttttgatcttaaaaactacacttttctatact |
193 |
Q |
| |
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||||||| |||||| || |||||||||||||||||||| ||||||| |
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| T |
27822302 |
agtatatacaaggtcttcgatcttaaaaactacactttgctatact |
27822347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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