View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13095_high_7 (Length: 391)
Name: NF13095_high_7
Description: NF13095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13095_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 19 - 338
Target Start/End: Complemental strand, 36261387 - 36261068
Alignment:
| Q |
19 |
gaaattaaaccacaaaattgaagaacataatgacataataccgtggtactttttcattcaaatgtgctaatataaatggtacaatataaagatattagtg |
118 |
Q |
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| T |
36261387 |
gaaattaaaccacaaaattgaagaaaataatgacataataccgtggtactttttcattcaaatgtgctaatataaatggtacaatataaagatattagtg |
36261288 |
T |
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| Q |
119 |
aaatgtattcaatttcagggaaagatgttcacccgattataaactagtcatagagtagtagagtccaagcttttctttctatagggcatgtgatacaaaa |
218 |
Q |
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| T |
36261287 |
aaatgtattcaatttcagggaaagatgttcacccaattataaactagtcatagagtagtagagtccaagcttttctttctatagtgcatgtgatacaaaa |
36261188 |
T |
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| Q |
219 |
cacacatgcatctatctggtcttcatggatgttccacatgatcgccattttcgatccctccgccttctcctccaggtccttttgtttcaccccgaccttt |
318 |
Q |
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| T |
36261187 |
cacacattcatctatctggttttcatggatgttccacatgatcgccattttcgatccctccgccttctcctccaggtccttttgtttctccccgaccttt |
36261088 |
T |
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| Q |
319 |
tcctccaggtccttcgggaa |
338 |
Q |
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| T |
36261087 |
tcctccaggtccttcgggaa |
36261068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 358 - 391
Target Start/End: Complemental strand, 36260988 - 36260955
Alignment:
| Q |
358 |
aggttctttattttcacttccttttgaacctcct |
391 |
Q |
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| T |
36260988 |
aggttctttattttcacttccttttgaacctcct |
36260955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 387
Target Start/End: Complemental strand, 36261042 - 36261013
Alignment:
| Q |
358 |
aggttctttattttcacttccttttgaacc |
387 |
Q |
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| T |
36261042 |
aggttctttattttcacttccttttgaacc |
36261013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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