View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13095_low_10 (Length: 247)
Name: NF13095_low_10
Description: NF13095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13095_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 33971442 - 33971212
Alignment:
| Q |
1 |
tcgcaatagattaacaccgtttgttatatgattgtgatggaaaaacccaaaatcgtaaggtatagaataaaattcaagtcgagtgcaaaagaggaaataa |
100 |
Q |
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| T |
33971442 |
tcgcaatagattaacaccgtttgttgcatgattgtgatggaaaaacccaaaatcgtaaggtatagaataaaattcaagtcgagtgtaaaagaggaaataa |
33971343 |
T |
|
| Q |
101 |
aagtaccaaaattgtgttatgtcctatctaactctcgtaccatgctattcggaagatatgtccctaacttatccggtctatatctacccgatattgtaaa |
200 |
Q |
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| T |
33971342 |
aagtaccaaaattgtgttatgtcctatataactctcgtaccatgccattcggaagatatgtccctaacttatccggtctatatctacccgatattgtaaa |
33971243 |
T |
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| Q |
201 |
taaggtaatttgagcatccggtagttatctt |
231 |
Q |
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| T |
33971242 |
taaggtaatttgagcatccagtagttatctt |
33971212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 31 - 120
Target Start/End: Original strand, 322810 - 322899
Alignment:
| Q |
31 |
attgtgatggaaaaacccaaaatcgtaaggtatagaataaaattcaagtcgagtgcaaaagaggaaataaaagtaccaaaattgtgttat |
120 |
Q |
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| T |
322810 |
attgttatggaaaatcccaaaatcgtaaagtttagaataaaattcaagtggagtgccaaagaggaaataatagaaccaaaattgtcttat |
322899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 6873312 - 6873216
Alignment:
| Q |
26 |
atatgattgtgatggaaaaacccaaaatcgtaaggtatagaataaaattcaagtcgagtgcaaaagaggaaataaaagtaccaaaattgtgttatgt |
122 |
Q |
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| T |
6873312 |
atatgattgatatggaaaatcccaaaatcgcaaggtttagaataaaattcaagtggagtgcaaaagaggaaataagagaaccaaaaccgtgttatgt |
6873216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 52 - 118
Target Start/End: Original strand, 24684447 - 24684513
Alignment:
| Q |
52 |
atcgtaaggtatagaataaaattcaagtcgagtgcaaaagaggaaataaaagtaccaaaattgtgtt |
118 |
Q |
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| T |
24684447 |
atcgcaaggtttagaagaaaatttaagtggagtgcaaaagaggaaataaaagtaccaaatttgtgtt |
24684513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 49 - 132
Target Start/End: Complemental strand, 45401158 - 45401075
Alignment:
| Q |
49 |
aaaatcgtaaggtatagaataaaattcaagtcgagtgcaaaagaggaaataaaagtaccaaaattgtgttatgtcctatctaac |
132 |
Q |
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| T |
45401158 |
aaaatcataaagtttagaataaaattcaagtgaagtgtaaaagaggaaataagagaaccaaaatcgtgttatgtcttatataac |
45401075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 63 - 132
Target Start/End: Original strand, 23849701 - 23849770
Alignment:
| Q |
63 |
tagaataaaattcaagtcgagtgcaaaagaggaaataaaagtaccaaaattgtgttatgtcctatctaac |
132 |
Q |
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| T |
23849701 |
tagaatataattcaagtggagtgcaaaagagcaattaagagaaccaaaattgtgttatgtcttatataac |
23849770 |
T |
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