View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13095_low_3 (Length: 531)
Name: NF13095_low_3
Description: NF13095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13095_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 138 - 516
Target Start/End: Original strand, 447438 - 447818
Alignment:
| Q |
138 |
aaatatgtctttgaaatgagtttgaaatttccaagctgcaatatcgatattctataaatgctctagagcatcaccaaggcaaaagatatgattctatttt |
237 |
Q |
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| T |
447438 |
aaatatgtctttgaaatgagtttgaaatttcctagctgcaatatcgatattctataaatgctctagagcatcaccaaggcaaaagatatgattctatttt |
447537 |
T |
|
| Q |
238 |
atttacatattctaataatatagttcacattcattctcattttttatggctattctttgtatcacaggataatcattttgattcttccttctgttttctt |
337 |
Q |
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| T |
447538 |
atttacatattctaataatataattcacattcattctcattttttatggctattctatgtatcacaggataatcattttgattcttccttctgttttctt |
447637 |
T |
|
| Q |
338 |
agcc--tagtattctcacaatagtgttttatacaaatataatttctggctattctaatgagtataattttgattcttccctatgattacctaatattgaa |
435 |
Q |
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|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
447638 |
agcctatagtattctcacaatagtgttttatacaaatatagtttctggctattctaatgagtataattttgattcttccctatgattacctaatatagaa |
447737 |
T |
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| Q |
436 |
cgataaagtggttaataaaatagactgaaatctgatactaattgaagatagtaaaaacacaaaaaaggaagagtttgaatt |
516 |
Q |
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| T |
447738 |
cgataaagtggttaataaaagagactgaaatctgatactaattgaagatagtaaaaacacaaaaaaggaagagtttgaatt |
447818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 10 - 142
Target Start/End: Original strand, 447273 - 447406
Alignment:
| Q |
10 |
attattctcaacagaataaaa-ggatcatgttatattgttgtttactggtgattgatctcaggaaagtcaaccaaatccaaaacacaaataaatgttcaa |
108 |
Q |
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||||||||||||||||||||| |||||||||||||||| |||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
447273 |
attattctcaacagaataaaaaggatcatgttatattgctgtttactcgtgattggtctcaggaaagtcaaccaaattcaaaacacaaataaatgttcaa |
447372 |
T |
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| Q |
109 |
ttagtgcaactgtgggagtttgaacaagtaaata |
142 |
Q |
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| T |
447373 |
ttagtgcaactgtgggagtttgaacaagttaata |
447406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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