View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13095_low_5 (Length: 461)
Name: NF13095_low_5
Description: NF13095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13095_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 317 - 439
Target Start/End: Original strand, 22764468 - 22764594
Alignment:
| Q |
317 |
tatctctttgtatagacaaactagtttgccaattattcataaat----gtgtcaaagacattaatgaaagaatatactataactgcaattgaagtgttaa |
412 |
Q |
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| T |
22764468 |
tatctctttgtatagacaaactagtttgccaattattcataaataattgtgtcgaagaaattaaagaaagaatatattataactgtaattgaagtgttaa |
22764567 |
T |
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| Q |
413 |
acactaaactgtaaaccctaatcatgt |
439 |
Q |
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| T |
22764568 |
acactaaaccttaaaccctcatcatgt |
22764594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 295 - 445
Target Start/End: Original strand, 33080286 - 33080441
Alignment:
| Q |
295 |
gcatgacatagtcttcggtatatatctctttgtatagacaaactagtttgccaattattcataaat----gtgtcaaagacattaatgaaagaatatact |
390 |
Q |
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| T |
33080286 |
gcatgacaaagccttcagtttatatctctttgtataga---actagtttgccaattattcataaataatcgtgtcaaaggcattaaagaaacaatatact |
33080382 |
T |
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| Q |
391 |
ataactgcaattgaagt----gttaaacactaaactgtaaaccctaatcatgtgggaga |
445 |
Q |
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| T |
33080383 |
ataactgcaattgaagttttaattaaacactaaaccgtaaaccctaatcatgtgggaga |
33080441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 112 - 176
Target Start/End: Original strand, 33078811 - 33078875
Alignment:
| Q |
112 |
gagatccagggaaactccagtgcgatctccctcaaaagcaacaatatattctattcattttttga |
176 |
Q |
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| T |
33078811 |
gagatctagggaaactccagtgcgatctccctcaaaagcaacaatatattctatttattttttga |
33078875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 93
Target Start/End: Original strand, 33078725 - 33078792
Alignment:
| Q |
23 |
tcagtgttgtaatttgtggtagaggaattaatatacaaaaacaaaagcataaccagagaagatcacacaca |
93 |
Q |
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| T |
33078725 |
tcagtgttgtaatttgtggcagaggaat--ataca-aaaaatgaaagcataacgagagaagatcacacaca |
33078792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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