View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13095_low_6 (Length: 408)
Name: NF13095_low_6
Description: NF13095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13095_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 23 - 392
Target Start/End: Original strand, 26099214 - 26099583
Alignment:
| Q |
23 |
ggaggagtttcttgttcatggccatggccttccgttacgggagtgaggaggagtttggcaaaaacttcatctgcgtgaggatcaacaaggagatcaacgg |
122 |
Q |
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||||||| ||||||||| ||||||||||| ||| |||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||||| |
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| T |
26099214 |
ggaggagcttcttgttcgtggccatggccatccattacgggagtgaggagcagtttggcaaagacttcatctgtgtgaggatcaacaaggagatcaacgg |
26099313 |
T |
|
| Q |
123 |
ctgagatgatgcaggaaatggaaggaggataacaatgaagaagggtgatgattgtgtgagttgagacatgttttaagtgaccttgtgggaagtagtaaac |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
26099314 |
ctgagatgatgcaggaaatggaaggaggataacaatgaagaagggtgatgattgtgtgaggggagacatgttttaagtgaccttgtgggaagtagtaaac |
26099413 |
T |
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| Q |
223 |
tttagaatgtatcttcggaatcttgactgaggctccgacacatttctgccagattttggtggggatggtaaatatagattttgtggggaatgcttcggaa |
322 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26099414 |
tttagaatgtagcttcggaatcttgactgaggctccgacacatttctgccagattttggtggggatggtaaatatagattttgtggggaatgcttcggaa |
26099513 |
T |
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| Q |
323 |
tgtagctccccggtatcacttaaccgggcagaactctgagcacgatttgagatggtgattagcatcattt |
392 |
Q |
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| T |
26099514 |
tgtagctccccggtatcacttaacagggcagaactctgagcacgatttgagatggtgattagcatcattt |
26099583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 249
Target Start/End: Complemental strand, 25224863 - 25224814
Alignment:
| Q |
200 |
tgaccttgtgggaagtagtaaactttagaatgtatcttcggaatcttgac |
249 |
Q |
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| T |
25224863 |
tgacctcgtgggaagtagtaaactttagagtgaatcttcggaatcttgac |
25224814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 249
Target Start/End: Complemental strand, 25289019 - 25288970
Alignment:
| Q |
200 |
tgaccttgtgggaagtagtaaactttagaatgtatcttcggaatcttgac |
249 |
Q |
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|||||| |||||||||||||||||||||| || ||||||||||||||||| |
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| T |
25289019 |
tgacctcgtgggaagtagtaaactttagagtgaatcttcggaatcttgac |
25288970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 56 - 144
Target Start/End: Complemental strand, 25225016 - 25224928
Alignment:
| Q |
56 |
gttacgggagtgaggaggagtttggcaaaaacttcatctgcgtgaggatcaacaaggagatcaacggctgagatgatgcaggaaatgga |
144 |
Q |
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| T |
25225016 |
gttacgggagtcaggagcagtttggcaaagacctcgtcggtgtgaggatcaacaaagagatcaacggaagagacgatgcatggaatgga |
25224928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 56 - 144
Target Start/End: Complemental strand, 25289172 - 25289084
Alignment:
| Q |
56 |
gttacgggagtgaggaggagtttggcaaaaacttcatctgcgtgaggatcaacaaggagatcaacggctgagatgatgcaggaaatgga |
144 |
Q |
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||||||||||| ||||| ||||||||||| || || || | |||||||||||||| ||||||||||| |||| |||||| | |||||| |
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| T |
25289172 |
gttacgggagtcaggagcagtttggcaaagacctcgtcggtgtgaggatcaacaaagagatcaacggaagagacgatgcatggaatgga |
25289084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 56 - 144
Target Start/End: Original strand, 25728232 - 25728320
Alignment:
| Q |
56 |
gttacgggagtgaggaggagtttggcaaaaacttcatctgcgtgaggatcaacaaggagatcaacggctgagatgatgcaggaaatgga |
144 |
Q |
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||||||||||| ||||| ||||||||||| || || || | |||||||||||||| ||||||||||| |||| |||||| | |||||| |
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| T |
25728232 |
gttacgggagtcaggagcagtttggcaaagacctcgtcggtgtgaggatcaacaaagagatcaacggaagagacgatgcatggaatgga |
25728320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 200 - 249
Target Start/End: Original strand, 25728385 - 25728434
Alignment:
| Q |
200 |
tgaccttgtgggaagtagtaaactttagaatgtatcttcggaatcttgac |
249 |
Q |
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| T |
25728385 |
tgacctcgtgggaagtagtaaactttagagtgaatctttggaatcttgac |
25728434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 135
Target Start/End: Original strand, 25222582 - 25222655
Alignment:
| Q |
62 |
ggagtgaggaggagtttggcaaaaacttcatctgcgtgaggatcaacaaggagatcaacggctgagatgatgca |
135 |
Q |
| |
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| T |
25222582 |
ggagtgaggagcagtttggcgaaaacctcgtcagtgagagcatcaacaaagagattaacggctgaaatgatgca |
25222655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 135
Target Start/End: Original strand, 25286738 - 25286811
Alignment:
| Q |
62 |
ggagtgaggaggagtttggcaaaaacttcatctgcgtgaggatcaacaaggagatcaacggctgagatgatgca |
135 |
Q |
| |
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||||||||||| |||||||| ||||| || || | | ||| |||||||| ||||| ||||||||| |||||||| |
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| T |
25286738 |
ggagtgaggagcagtttggcgaaaacctcgtcagtgagagcatcaacaaagagattaacggctgaaatgatgca |
25286811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 56 - 144
Target Start/End: Complemental strand, 25618132 - 25618044
Alignment:
| Q |
56 |
gttacgggagtgaggaggagtttggcaaaaacttcatctgcgtgaggatcaacaaggagatcaacggctgagatgatgcaggaaatgga |
144 |
Q |
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||||||||||||||||| |||||||| || |||||||| | || ||||||| |||||||||| |||| ||||||||||| | |||||| |
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| T |
25618132 |
gttacgggagtgaggagcagtttggcgaagacttcatcagtgtaaggatcagcaaggagatcgacggtggagatgatgcacggaatgga |
25618044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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