View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13096_high_10 (Length: 452)
Name: NF13096_high_10
Description: NF13096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13096_high_10 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 160; Significance: 4e-85; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 281 - 452
Target Start/End: Complemental strand, 39184824 - 39184653
Alignment:
| Q |
281 |
atatgttttgtgttgctgtctgttttcttggtgaggcggtttggcagcgtagttttggctctatcgttggcttgtgggtatattcttcgtggctgcttct |
380 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39184824 |
atatgttttgtgttgctgtctgttttcttggtgaggcggtttggcggcgtagttttggctctatcgttggcttgtgggtatattcttcgtggctgcttct |
39184725 |
T |
|
| Q |
381 |
tcggaatgctatggcggtgtggccgctttccttggagtctttcaactttgttgtcttgttggtgttggtggt |
452 |
Q |
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|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
39184724 |
tcggaatgctatggcgttgtggccgctttccttgaagtctttcaactttgttgtcttgttggtgttggtggt |
39184653 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 291 - 438
Target Start/End: Original strand, 8730355 - 8730501
Alignment:
| Q |
291 |
tgttgctgtctgttttcttggtgaggcggtttggcagcgtagttttggctctatcgttggcttgtgggtatattcttcgtggctgcttcttcggaatgct |
390 |
Q |
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|||||||| |||||||| || |||| | ||||||||| |||||| || |||||||||||| | ||||||||||| | |||| ||| |||| |||||| |
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| T |
8730355 |
tgttgctgcctgttttcatg-tgagacagtttggcagtgtagttctgtctctatcgttggttggtgggtatatttattgtggttgcctctttataatgct |
8730453 |
T |
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| Q |
391 |
atggcggtgtggccgctttccttggagtctttcaactttgttgtcttg |
438 |
Q |
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|||||| ||| | |||| |||||||| |||||||||||||||||||| |
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| T |
8730454 |
atggcgatgttgttgcttaccttggagactttcaactttgttgtcttg |
8730501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 9e-37; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 291 - 440
Target Start/End: Original strand, 17032951 - 17033101
Alignment:
| Q |
291 |
tgttgctgtctgttttcttggtgaggcggtttggcagcgtagttttgg-ctctatcgttggcttgtgggtatattcttcgtggctgcttcttcggaatgc |
389 |
Q |
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|||||||| ||||||||||||||| ||||||||||| |||||||| | |||||||| || |||||||| ||||| |||||||||||||||||||||| |
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| T |
17032951 |
tgttgctgcttgttttcttggtgagacggtttggcagtgtagtttttgtctctatcgctgatttgtgggtttattcaacgtggctgcttcttcggaatgc |
17033050 |
T |
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| Q |
390 |
tatggcggtgtggccgctttccttggagtctttcaactttgttgtcttgtt |
440 |
Q |
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||||||| |||||| ||||||||| ||| | |||||||||||||||||||| |
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| T |
17033051 |
tatggcgatgtggctgctttccttagagaccttcaactttgttgtcttgtt |
17033101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 291 - 431
Target Start/End: Original strand, 42373613 - 42373752
Alignment:
| Q |
291 |
tgttgctgtctgttttcttggtgaggcggtttggcagcgtagttttggctctatcgttggcttgtgggtatattcttcgtggctgcttcttcggaatgct |
390 |
Q |
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|||| ||| ||||||||||||||||| |||||| | ||||||||||| ||||||| |||| |||||||||||||| |||||||||||||||||||||| |
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| T |
42373613 |
tgttactgcctgttttcttggtgaggtggtttgacggcgtagttttgtctctatctttgg-ttgtgggtatattcactgtggctgcttcttcggaatgct |
42373711 |
T |
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| Q |
391 |
atggcggtgtggccgctttccttggagtctttcaactttgt |
431 |
Q |
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|||||| ||| || | ||||||||||| | ||||||||||| |
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| T |
42373712 |
atggcgatgttgctgatttccttggagaccttcaactttgt |
42373752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 438
Target Start/End: Original strand, 19598028 - 19598180
Alignment:
| Q |
287 |
tttgtgttgctgtctgttttcttggtgaggcggtttggcagcgtagt-tttggctctatcgttggcttgtgggtatattcttcgtggctgcttcttcgga |
385 |
Q |
| |
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|||| ||||||| |||||| ||||| |||| ||||||| |||||| |||| |||| ||| ||| ||||| |||||||||| |||| || |||||| || |
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| T |
19598028 |
tttgggttgctgcctgttt-cttggcgaggtggtttggaggcgtagcctttgtctctttcgatggtttgtgagtatattctttgtggttgattcttcaga |
19598126 |
T |
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| Q |
386 |
atgctatggcggtg-tggccgctttccttggagtctttcaactttgttgtcttg |
438 |
Q |
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||||||||| | || | || ||||||||||||| | || ||| | ||||||||| |
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| T |
19598127 |
atgctatggtgatgtttgctgctttccttggagacattaaacctcgttgtcttg |
19598180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 291 - 438
Target Start/End: Complemental strand, 25505552 - 25505406
Alignment:
| Q |
291 |
tgttgctgtctgttttcttggtgaggcggtttggcagcgtagttttggctctatcgttggcttgtgggtatattcttcgtggctgcttcttcggaatgct |
390 |
Q |
| |
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|||||||| |||||||| || |||| | ||||||||| |||||| || |||||||||||| | ||||||||||| | |||| ||| |||| |||||| |
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| T |
25505552 |
tgttgctgcctgttttcatg-tgagacagtttggcagtgtagttctgtctctatcgttggttggtgggtatatttattgtggttgcctctttataatgct |
25505454 |
T |
|
| Q |
391 |
atggcggtgtggccgctttccttggagtctttcaactttgttgtcttg |
438 |
Q |
| |
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|||||| ||| | |||| |||||||| |||||||||||||||||||| |
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| T |
25505453 |
atggcgatgttgttgcttaccttggagactttcaactttgttgtcttg |
25505406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 304 - 438
Target Start/End: Complemental strand, 22886042 - 22885907
Alignment:
| Q |
304 |
tttcttggtgaggcggtttggcagcgtagttt-tggctctatcgttggcttgtgggtatattcttcgtggctgcttcttcggaatgctatggcggtgtgg |
402 |
Q |
| |
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||||||||||||| |||||||| |||| |||| | ||||||| | | |||||||||||||| | ||||||||||||||| ||||||| |||| ||| |
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| T |
22886042 |
tttcttggtgaggtggtttggcggcgtggtttctatctctatcactagtttgtgggtatattcgttgtggctgcttcttcgaaatgctaaggcgatgttc |
22885943 |
T |
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| Q |
403 |
ccgctttccttggagtctttcaactttgttgtcttg |
438 |
Q |
| |
|
| ||||||||| ||| ||||||| ||||||||||| |
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| T |
22885942 |
ctgctttccttagagactttcaatcttgttgtcttg |
22885907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 306 - 424
Target Start/End: Complemental strand, 46699483 - 46699364
Alignment:
| Q |
306 |
tcttggtgaggcggtttggcagcgtagttt-tggctctatcgttggcttgtgggtatattcttcgtggctgcttcttcggaatgctatggcggtgtggcc |
404 |
Q |
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|
||||||||||| |||||||| ||||||||| | || ||||| ||| ||||||||| |||| | ||||||||||||||||||| ||||| | ||| || |
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|
| T |
46699483 |
tcttggtgaggtggtttggcggcgtagtttatatctttatcgctggtttgtgggtaaattcaccatggctgcttcttcggaatgttatggtgatgttgct |
46699384 |
T |
|
| Q |
405 |
gctttccttggagtctttca |
424 |
Q |
| |
|
||||||||| ||| |||||| |
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| T |
46699383 |
gctttccttcgagactttca |
46699364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 394
Target Start/End: Original strand, 12295557 - 12295612
Alignment:
| Q |
339 |
ctctatcgttggcttgtgggtatattcttcgtggctgcttcttcggaatgctatgg |
394 |
Q |
| |
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|||||| | ||| |||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
12295557 |
ctctattgatggtttgtgggtatattcaccgtggctgcttcttcagaatgctatgg |
12295612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 325
Target Start/End: Original strand, 16501262 - 16501300
Alignment:
| Q |
287 |
tttgtgttgctgtctgttttcttggtgaggcggtttggc |
325 |
Q |
| |
|
||||||| || |||||||||||||||||||||||||||| |
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|
| T |
16501262 |
tttgtgtggccgtctgttttcttggtgaggcggtttggc |
16501300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 286 - 437
Target Start/End: Complemental strand, 25595180 - 25595029
Alignment:
| Q |
286 |
ttttgtgttgctgtctgttttcttggtgaggcggtttggcagcgtagttttggctctatcgttggcttgtgggtatattcttcgtggctgcttcttcgga |
385 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||||| |||||||| | |||||||| | | || ||||||| || ||||||||| | || ||| |
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| T |
25595180 |
ttttgtgttgctgcttgttt-cttggtgaggcggtttggcaacgtagtttcgtctctatcgctcgtttatgggtattttaaccgtggctgcatttttgga |
25595082 |
T |
|
| Q |
386 |
atgctatggcggtgtggccgctttcc-ttggagtctttcaactttgttgtctt |
437 |
Q |
| |
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| || |||||| ||| || ||||||| |||||| |||||| ||| | |||||| |
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|
| T |
25595081 |
aggcaatggcgatgttgctgctttcctttggagactttcatcttcgctgtctt |
25595029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 287 - 387
Target Start/End: Original strand, 5556058 - 5556158
Alignment:
| Q |
287 |
tttgtgttgctgtctgttttcttggtgaggcggtttggcagcgtagttttggctctatcgttggcttgtgggtatattcttcgtggctgcttcttcggaa |
386 |
Q |
| |
|
|||||||||||| ||||||| ||||| ||||||| ||| || | |||||| |||| ||| ||| |||||||||||||| ||| ||||||||||||| |
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| T |
5556058 |
tttgtgttgctgcttgttttcatggtgtggcggttaggctgcattgttttgtctctgtcgctggtttgtgggtatattcactatggttgcttcttcggaa |
5556157 |
T |
|
| Q |
387 |
t |
387 |
Q |
| |
|
| |
|
|
| T |
5556158 |
t |
5556158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 287 - 374
Target Start/End: Original strand, 37792821 - 37792908
Alignment:
| Q |
287 |
tttgtgttgctgtctgttttcttggtgaggcggtttggcagcgtagttt-tggctctatcgttggcttgtgggtatattcttcgtggct |
374 |
Q |
| |
|
|||||||||||||||| ||||||||| | |||||||| ||||||||| || |||| ||||||| |||||||| ||||| |||||||| |
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|
| T |
37792821 |
tttgtgttgctgtctg-tttcttggttggctggtttggcggcgtagtttctgtctctgtcgttggtttgtgggtttattcatcgtggct |
37792908 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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