View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13096_high_13 (Length: 422)
Name: NF13096_high_13
Description: NF13096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13096_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 19 - 404
Target Start/End: Original strand, 6412540 - 6412937
Alignment:
| Q |
19 |
tgattgacctgtgtttctttggatgttggaaagcgcaagagacatggatggaagtgggtctttggatgatcataaatggccgaatgcatagggcaaatgg |
118 |
Q |
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| T |
6412540 |
tgattgacatgtgtttctttgaatgtaggaaagcgcaagagacatggatggaagtgggtctttggatgatcataaatggccgaatgcatagggcaaatgg |
6412639 |
T |
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| Q |
119 |
atttaattctctatttgtttttatctcacagaattgttgtcatctaatcaatcgaaaatatttgttagagcattatggtgcatttggaagaggaggatta |
218 |
Q |
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| T |
6412640 |
atttaattctctatttgtttttatctcacagaattgttgacatctaatcaatcgagcatatttgttatagcattatggtgcatttggaagaggaggatta |
6412739 |
T |
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| Q |
219 |
agaagttatgtgaagaggttgatactcgcctagcgataactctacccacagcaagggatcacttgtccgaaaacatgatagtagatgcacaagccgcaag |
318 |
Q |
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| T |
6412740 |
agaagttatatgaagaggttgatactcgcctggcgataactctacccacagcaagggatcacttgtccgaaaacatgatagtagatgcacaatccgcaag |
6412839 |
T |
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| Q |
319 |
ag------------atcgaaaacacagctgcaacaacaaaagaaaatagcaacgacaatagaacttgaggaaaatggagcgaacattaatcaaagtag |
404 |
Q |
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|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6412840 |
agggatctgtcaaaatcgaaaacacaactgcaacaacaaaagaaaatagcaacgacaatagaacttgaggaaaatggagcgaacattaatcaaagtag |
6412937 |
T |
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