View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13096_high_14 (Length: 419)
Name: NF13096_high_14
Description: NF13096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13096_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 21 - 405
Target Start/End: Original strand, 35955904 - 35956288
Alignment:
| Q |
21 |
tttacatttgtgtttgttgccatagattaatccttcgggccccaaatgttcaaatatctatggtgaaattgcatttgctttctttatgtttgtttacgca |
120 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
35955904 |
tttacatttgtgtttgttgccatagattaatccttcaggccccaaatgttcaaatatctatggtgagattgcatttgctttctttatgtttgtttacgca |
35956003 |
T |
|
| Q |
121 |
tcatctgcaaatatatctaatatcccaaaaatgtgataagtaagaaagaaagaaataacccctccacacctggaatccatgaagaatcaacaatttaaat |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||| |
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| T |
35956004 |
tcatctgcaaatatatctaatatcccaaaaatgtgataagtaagaaagaaagaaataacccctcgacacctggaatccatgaagaatcaacacttcaaat |
35956103 |
T |
|
| Q |
221 |
tgaaggtgtctccagtgttcatatgtgttgctttagggcaccaacatgacactgtcgcatgtggtcacattcaattacttttattttcgcaaattatttc |
320 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35956104 |
tgaaggtgtctccagtgttcatatgtgttggtttagggcaccaacacgacactgtcgcatgtggtcacattcaattacttttattttcgcaaattatttc |
35956203 |
T |
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| Q |
321 |
tggtgtctacgtgtaactgtagtgtcatgtccagtgccggtcatgcttcatagcccggaattggactcctctcccttcatgtgcc |
405 |
Q |
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| T |
35956204 |
tggtgtctacgtgtaactgtagtgtcatgtccagtgccggtcatgcttcatagcccggaattggactcctctcccttcatgtgcc |
35956288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 21 - 405
Target Start/End: Original strand, 33904487 - 33904871
Alignment:
| Q |
21 |
tttacatttgtgtttgttgccatagattaatccttcgggccccaaatgttcaaatatctatggtgaaattgcatttgctttctttatgtttgtttacgca |
120 |
Q |
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| T |
33904487 |
tttacatttgtgtttgttgccatagattaatccttcaggccccaaatgttcaaatatctatggtgaaattgcattttctttctttatgtttgtttacgca |
33904586 |
T |
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| Q |
121 |
tcatctgcaaatatatctaatatcccaaaaatgtgataagtaagaaagaaagaaataacccctccacacctggaatccatgaagaatcaacaatttaaat |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||| |
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| T |
33904587 |
tcatctgcaaatatatctaatatcccaaaaatgtgataagtaagaaagaaagaaataacccctcgacacctggaatccatgaagaatcaacacttcaaat |
33904686 |
T |
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| Q |
221 |
tgaaggtgtctccagtgttcatatgtgttgctttagggcaccaacatgacactgtcgcatgtggtcacattcaattacttttattttcgcaaattatttc |
320 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33904687 |
tgaaggtgtctccagtgttcatatgtgttggtttagggcaccaacacgacactgtcgcatgtggtcacattcaattacttttattttcgcaaattatttc |
33904786 |
T |
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| Q |
321 |
tggtgtctacgtgtaactgtagtgtcatgtccagtgccggtcatgcttcatagcccggaattggactcctctcccttcatgtgcc |
405 |
Q |
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| T |
33904787 |
tggtgtctacgtgtaactgtagtgtcatgtccagtgccggtcatgcttcatagcccggaattggactcctctcccttcatgtgcc |
33904871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 277 - 330
Target Start/End: Original strand, 9018879 - 9018932
Alignment:
| Q |
277 |
gcatgtggtcacattcaattacttttattttcgcaaattatttctggtgtctac |
330 |
Q |
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||||||||| ||||||||||||||| |||||| ||||||| | ||||||||||| |
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| T |
9018879 |
gcatgtggttacattcaattactttcattttctcaaattactactggtgtctac |
9018932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 330
Target Start/End: Complemental strand, 10042340 - 10042288
Alignment:
| Q |
278 |
catgtggtcacattcaattacttttattttcgcaaattatttctggtgtctac |
330 |
Q |
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| T |
10042340 |
catgtggttacattcaatcacttctattttcacaaattattactggtgtctac |
10042288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 327
Target Start/End: Original strand, 18542221 - 18542270
Alignment:
| Q |
278 |
catgtggtcacattcaattacttttattttcgcaaattatttctggtgtc |
327 |
Q |
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|||||| | |||||||||||||| ||||||| ||||||||| |||||||| |
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| T |
18542221 |
catgtgattacattcaattacttgtattttctcaaattattactggtgtc |
18542270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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