View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13096_high_16 (Length: 407)

Name: NF13096_high_16
Description: NF13096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13096_high_16
NF13096_high_16
[»] chr4 (28 HSPs)
chr4 (1-407)||(668275-668681)
chr4 (120-223)||(669649-669753)
chr4 (109-190)||(40723224-40723306)
chr4 (110-327)||(13533162-13533378)
chr4 (129-190)||(2162626-2162687)
chr4 (204-272)||(36614185-36614253)
chr4 (109-190)||(53432059-53432140)
chr4 (115-188)||(53435793-53435866)
chr4 (113-189)||(28589782-28589858)
chr4 (110-190)||(38698066-38698146)
chr4 (235-325)||(34438526-34438616)
chr4 (135-187)||(3921172-3921224)
chr4 (110-178)||(7053178-7053246)
chr4 (138-190)||(28590943-28590995)
chr4 (129-190)||(2310940-2311001)
chr4 (110-190)||(40724882-40724960)
chr4 (129-190)||(40792768-40792829)
chr4 (235-315)||(56296313-56296394)
chr4 (230-326)||(27847795-27847891)
chr4 (138-190)||(38695569-38695621)
chr4 (138-177)||(1190243-1190282)
chr4 (32-95)||(13860397-13860460)
chr4 (230-385)||(28656961-28657116)
chr4 (111-190)||(34328415-34328494)
chr4 (230-308)||(2162727-2162805)
chr4 (33-90)||(554657-554714)
chr4 (137-190)||(40445390-40445443)
chr4 (274-325)||(2311115-2311167)
[»] chr5 (21 HSPs)
chr5 (110-404)||(10977020-10977314)
chr5 (113-302)||(32757826-32758015)
chr5 (110-187)||(8523787-8523864)
chr5 (106-190)||(8521249-8521333)
chr5 (227-310)||(20539264-20539347)
chr5 (110-216)||(10978291-10978397)
chr5 (109-189)||(1009181-1009261)
chr5 (110-190)||(1010402-1010482)
chr5 (110-190)||(32759086-32759166)
chr5 (306-407)||(14356207-14356308)
chr5 (113-186)||(26047814-26047887)
chr5 (109-310)||(9169583-9169783)
chr5 (129-190)||(30857817-30857878)
chr5 (135-176)||(34899003-34899044)
chr5 (129-190)||(39605507-39605568)
chr5 (146-190)||(22049174-22049218)
chr5 (135-190)||(22047755-22047810)
chr5 (32-90)||(5770317-5770375)
chr5 (135-176)||(9170944-9170985)
chr5 (135-176)||(11846323-11846364)
chr5 (235-308)||(15856653-15856726)
[»] chr2 (30 HSPs)
chr2 (110-407)||(9472622-9472918)
chr2 (110-302)||(34147134-34147326)
chr2 (110-181)||(35061269-35061340)
chr2 (109-217)||(35903505-35903613)
chr2 (110-224)||(9474056-9474170)
chr2 (110-190)||(30749331-30749411)
chr2 (138-308)||(2277389-2277559)
chr2 (110-190)||(2276279-2276359)
chr2 (110-190)||(34148398-34148478)
chr2 (110-186)||(35061358-35061433)
chr2 (113-187)||(34512815-34512889)
chr2 (220-297)||(42366976-42367053)
chr2 (110-190)||(34513591-34513671)
chr2 (204-299)||(1149117-1149212)
chr2 (230-297)||(18971227-18971294)
chr2 (112-186)||(33995948-33996021)
chr2 (32-93)||(27913144-27913205)
chr2 (230-302)||(102113-102185)
chr2 (273-348)||(32470455-32470531)
chr2 (110-190)||(35904781-35904861)
chr2 (1-90)||(38702170-38702258)
chr2 (225-308)||(1409754-1409837)
chr2 (2-90)||(36080277-36080364)
chr2 (135-190)||(37956972-37957027)
chr2 (32-90)||(4652417-4652475)
chr2 (230-304)||(7753450-7753524)
chr2 (135-169)||(16289800-16289834)
chr2 (129-190)||(17460722-17460783)
chr2 (230-299)||(21664920-21664989)
chr2 (274-325)||(1083149-1083201)
[»] chr3 (34 HSPs)
chr3 (151-396)||(5123178-5123423)
chr3 (112-190)||(28909643-28909721)
chr3 (110-190)||(3455663-3455743)
chr3 (110-189)||(43173884-43173963)
chr3 (113-310)||(20288142-20288339)
chr3 (119-183)||(5122308-5122372)
chr3 (236-327)||(53624263-53624354)
chr3 (230-332)||(21515507-21515609)
chr3 (230-308)||(46495612-46495690)
chr3 (137-190)||(43174744-43174797)
chr3 (129-187)||(3208501-3208559)
chr3 (110-163)||(20314800-20314853)
chr3 (110-163)||(20336693-20336746)
chr3 (235-315)||(43346362-43346443)
chr3 (230-310)||(20336575-20336655)
chr3 (146-190)||(53194908-53194952)
chr3 (241-308)||(21074200-21074267)
chr3 (138-177)||(37735332-37735371)
chr3 (230-327)||(20314664-20314762)
chr3 (148-186)||(50809457-50809495)
chr3 (148-186)||(50810876-50810914)
chr3 (148-186)||(50864950-50864988)
chr3 (148-186)||(50866367-50866405)
chr3 (230-304)||(55423511-55423585)
chr3 (113-190)||(9338474-9338551)
chr3 (129-186)||(18442269-18442326)
chr3 (129-186)||(19487343-19487400)
chr3 (235-315)||(21128045-21128126)
chr3 (277-325)||(34818250-34818299)
chr3 (129-177)||(34818103-34818151)
chr3 (274-325)||(35372062-35372114)
chr3 (274-325)||(41263799-41263851)
chr3 (274-325)||(42592700-42592752)
chr3 (138-186)||(42684902-42684950)
[»] scaffold2071 (1 HSPs)
scaffold2071 (109-190)||(719-800)
[»] chr8 (27 HSPs)
chr8 (136-223)||(45396023-45396109)
chr8 (109-190)||(38696305-38696386)
chr8 (110-187)||(38697047-38697124)
chr8 (110-190)||(41743653-41743733)
chr8 (110-190)||(45437520-45437600)
chr8 (110-185)||(42878859-42878934)
chr8 (110-190)||(28734986-28735066)
chr8 (121-189)||(45394976-45395044)
chr8 (135-190)||(42877642-42877697)
chr8 (135-190)||(17702313-17702368)
chr8 (135-190)||(34504678-34504733)
chr8 (228-325)||(32797256-32797354)
chr8 (109-163)||(45396113-45396167)
chr8 (231-308)||(28735109-28735186)
chr8 (129-190)||(32693847-32693908)
chr8 (230-332)||(26697728-26697831)
chr8 (32-90)||(12838649-12838707)
chr8 (148-190)||(14840937-14840979)
chr8 (148-186)||(28418842-28418880)
chr8 (148-186)||(28420216-28420254)
chr8 (138-176)||(30787652-30787690)
chr8 (235-315)||(24069361-24069442)
chr8 (235-315)||(39515319-39515400)
chr8 (289-389)||(44076200-44076300)
chr8 (230-315)||(45395085-45395170)
chr8 (274-325)||(32693991-32694043)
chr8 (274-325)||(42100009-42100061)
[»] scaffold1251 (1 HSPs)
scaffold1251 (110-217)||(1096-1203)
[»] chr7 (20 HSPs)
chr7 (110-327)||(9662138-9662354)
chr7 (110-190)||(38539669-38539749)
chr7 (110-190)||(25533186-25533266)
chr7 (138-187)||(46201157-46201206)
chr7 (109-191)||(46202320-46202402)
chr7 (109-190)||(35131-35212)
chr7 (204-299)||(26135733-26135828)
chr7 (135-190)||(47060513-47060568)
chr7 (32-94)||(9334781-9334843)
chr7 (110-190)||(27752-27832)
chr7 (235-310)||(8661944-8662019)
chr7 (135-170)||(10942310-10942345)
chr7 (32-87)||(39151867-39151922)
chr7 (210-296)||(7354602-7354688)
chr7 (36-94)||(10199586-10199644)
chr7 (32-94)||(20097835-20097897)
chr7 (33-90)||(4998271-4998328)
chr7 (245-310)||(28325202-28325267)
chr7 (146-186)||(33779126-33779166)
chr7 (230-325)||(43459572-43459668)
[»] scaffold0011 (2 HSPs)
scaffold0011 (110-190)||(127431-127511)
scaffold0011 (110-190)||(128629-128709)
[»] chr1 (35 HSPs)
chr1 (110-190)||(15746804-15746884)
chr1 (110-190)||(46467144-46467224)
chr1 (109-186)||(48097073-48097150)
chr1 (110-190)||(20064174-20064254)
chr1 (135-185)||(835268-835318)
chr1 (109-190)||(42244628-42244709)
chr1 (110-190)||(15743274-15743354)
chr1 (110-190)||(46318655-46318735)
chr1 (129-176)||(836245-836292)
chr1 (235-332)||(19466104-19466201)
chr1 (204-332)||(21507157-21507285)
chr1 (235-326)||(36509931-36510022)
chr1 (32-87)||(43723815-43723870)
chr1 (111-190)||(46468757-46468836)
chr1 (135-186)||(51042384-51042435)
chr1 (230-296)||(16757456-16757522)
chr1 (109-167)||(18818973-18819031)
chr1 (136-186)||(30535711-30535761)
chr1 (113-190)||(10722416-10722493)
chr1 (121-190)||(20069925-20069994)
chr1 (230-325)||(16963951-16964047)
chr1 (146-190)||(24499693-24499737)
chr1 (32-87)||(34748898-34748953)
chr1 (32-94)||(12267145-12267207)
chr1 (32-94)||(13262747-13262809)
chr1 (257-321)||(7161229-7161294)
chr1 (231-308)||(7819359-7819436)
chr1 (129-190)||(15072828-15072889)
chr1 (125-186)||(16123300-16123361)
chr1 (227-327)||(835390-835489)
chr1 (135-187)||(10711809-10711861)
chr1 (112-176)||(28757039-28757103)
chr1 (244-312)||(30535585-30535653)
chr1 (110-190)||(42245925-42246005)
chr1 (135-187)||(44276145-44276197)
[»] chr6 (11 HSPs)
chr6 (230-327)||(7312184-7312281)
chr6 (204-299)||(136719-136814)
chr6 (230-332)||(24757000-24757103)
chr6 (124-176)||(35037145-35037197)
chr6 (235-321)||(12773190-12773277)
chr6 (210-299)||(30231576-30231665)
chr6 (138-190)||(16208550-16208602)
chr6 (138-177)||(7310302-7310341)
chr6 (263-334)||(20489274-20489345)
chr6 (110-180)||(7308495-7308565)
chr6 (122-240)||(17593591-17593709)
[»] scaffold0148 (1 HSPs)
scaffold0148 (231-332)||(14820-14921)
[»] scaffold0004 (1 HSPs)
scaffold0004 (112-180)||(334151-334220)
[»] scaffold0001 (1 HSPs)
scaffold0001 (112-180)||(44858-44927)
[»] scaffold0201 (1 HSPs)
scaffold0201 (134-176)||(21149-21191)
[»] scaffold0013 (1 HSPs)
scaffold0013 (135-189)||(32595-32649)
[»] scaffold0128 (1 HSPs)
scaffold0128 (231-327)||(22099-22196)
[»] scaffold0078 (1 HSPs)
scaffold0078 (125-178)||(18825-18878)


Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Original strand, 668275 - 668681
Alignment:
Q  1 aaaaaataagaatttagattatannnnnnnngttatattgtcggtgtcaatgaaaaaaataattctggttagtttgatttattataatttaaaattnnnn 100  Q
    |||||||||||||||||||||||        |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  668275 aaaaaataagaatttagattatattttttttgttatattgttggtgtcaatgaaaaaaataattctggttagtttgatttattataatttaaaattaaaa 668374  T
Q  101 nnnnnttatggcttaataagtcatttgatcctccaattaattttcagttttcattttggtcccataactaataaaactcacgttttggtcagccaatttt 200  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||    
T  668375 aaaaattatggcttaataagtcatttgatcctccaattaattttcagttttcattttggtctcataactaataaaactcacgttttggtcccccaatttt 668474  T
Q  201 acgtccgtcagtcaaattggtcccattccgttaattttaaccccaaatgtttaagatggaacaacattgtagatggtctatcatagaccttattaatttt 300  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  668475 acgtccgtcattcaaattggtcccattccgttaattttaaccccaaatatttaagatggaacaacattgtagatggtctatcatagaccttattaatttt 668574  T
Q  301 ttaaatttaaccattagatctatttttcaaaacaaaaaacgttagatcaaaaaggtctattgtatcatacaatgaaccatcaacaactaattatttttcc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  668575 ttaaatttaaccattagatctatttttcaaaacaaaaaacgttggatcaaaaaggtctattgtatcatacaatgaaccatcaacaactaattatttttcc 668674  T
Q  401 ctttctt 407  Q
    |||||||    
T  668675 ctttctt 668681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 120 - 223
Target Start/End: Complemental strand, 669753 - 669649
Alignment:
Q  120 gtcatttgatcctccaattaattttcagttttcattttggtcccataactaataaaactcacgttttggtcagccaattttacgt-ccgtcagtcaaatt 218  Q
    |||||||| ||| |||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||   ||||| || || ||||||||||||||    
T  669753 gtcatttggtcccccaattaattttcaattttcattttggtcccataattaataaaactcacattttggtccctcaattataggtcccgtcagtcaaatt 669654  T
Q  219 ggtcc 223  Q
    |||||    
T  669653 ggtcc 669649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 109 - 190
Target Start/End: Original strand, 40723224 - 40723306
Alignment:
Q  109 tggcttaataagtcatttgatcctccaattaatttt-cagttttcattttggtcccataactaataaaactcacgttttggtc 190  Q
    |||||||||| |||||||| ||| | |||||||||| || ||||||||||||||||||||||||||||||||| |||||||||    
T  40723224 tggcttaataggtcatttggtcccctaattaattttgcaattttcattttggtcccataactaataaaactcatgttttggtc 40723306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 110 - 327
Target Start/End: Complemental strand, 13533378 - 13533162
Alignment:
Q  110 ggcttaataagtcatttgatcctccaattaattttcagttttcattttggtcccataactaataaaactcacgttttggtcagccaattttacgtccgtc 209  Q
    ||||||||| |||||||| ||||| |||||||||  ||||||||| || || |||||||||| |||||||| |||||||||   ||  |||   ||||||    
T  13533378 ggcttaataggtcatttggtcctctaattaatttcaagttttcatcttagttccataactaaaaaaactcatgttttggtccctcacgtttgtctccgtc 13533279  T
Q  210 agtcaaattggtcccattccgttaattttaaccccaaatgtttaagatggaacaacattgtagatggtctatcatagaccttattaattttttaaattta 309  Q
     |||||||   ||| |  | ||||| ||||||  ||||||| || | |||| ||||||| ||||| ||| | |||||||||||||||||||| || ||||    
T  13533278 ggtcaaataaatcc-agactgttaaatttaacttcaaatgtctatggtggaccaacattatagatagtccaccatagaccttattaatttttcaatttta 13533180  T
Q  310 accattagatctattttt 327  Q
    |||||| ||||| |||||    
T  13533179 accatttgatcttttttt 13533162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 129 - 190
Target Start/End: Original strand, 2162626 - 2162687
Alignment:
Q  129 tcctccaattaattttcagttttcattttggtcccataactaataaaactcacgttttggtc 190  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||    
T  2162626 tcctctaattaattttcagttttcattttagtcccataactaataaaactcatattttggtc 2162687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 204 - 272
Target Start/End: Original strand, 36614185 - 36614253
Alignment:
Q  204 tccgtcagtcaaattggtcccattccgttaattttaaccccaaatgtttaagatggaacaacattgtag 272  Q
    ||||||| ||||||||||||| || ||||||||||||| ||||||||||||||| || |||||||||||    
T  36614185 tccgtcactcaaattggtcccgtttcgttaattttaactccaaatgtttaagatagaccaacattgtag 36614253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 109 - 190
Target Start/End: Original strand, 53432059 - 53432140
Alignment:
Q  109 tggcttaataagtcatttgatcctccaattaattttcagttttcattttggtcccataactaataaaactcacgttttggtc 190  Q
    |||||||||| ||| ||||||||   |||||||||  |||||||||||||||||||||| |||||||||| | |||||||||    
T  53432059 tggcttaataggtcgtttgatcccttaattaatttcaagttttcattttggtcccataagtaataaaacttatgttttggtc 53432140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 115 - 188
Target Start/End: Complemental strand, 53435866 - 53435793
Alignment:
Q  115 aataagtcatttgatcctccaattaattttcagttttcattttggtcccataactaataaaactcacgttttgg 188  Q
    |||| ||||||||||||   |||||||||  |||||||||||||||||||||| |||||||||||| |||||||    
T  53435866 aataggtcatttgatcccttaattaatttcaagttttcattttggtcccataagtaataaaactcatgttttgg 53435793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 113 - 189
Target Start/End: Original strand, 28589782 - 28589858
Alignment:
Q  113 ttaataagtcatttgatcctccaattaattttcagttttcattttggtcccataactaataaaactcacgttttggt 189  Q
    |||||| ||||||||||||   || |||||||||||||||||||||||||||||| || ||||||| | ||||||||    
T  28589782 ttaataggtcatttgatcccttaaataattttcagttttcattttggtcccataagtattaaaacttatgttttggt 28589858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 110 - 190
Target Start/End: Complemental strand, 38698146 - 38698066
Alignment:
Q  110 ggcttaataagtcatttgatcctccaattaattttcagttttcattttggtcccataactaataaaactcacgttttggtc 190  Q
    ||||||||| |||||||| ||||  || |||||| || ||||||||||||||||||| ||||||||| ||| |||||||||    
T  38698146 ggcttaataggtcatttggtcctttaaataatttccaattttcattttggtcccatatctaataaaagtcatgttttggtc 38698066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 235 - 325
Target Start/End: Original strand, 34438526 - 34438616
Alignment:
Q  235 ttttaaccccaaatgtttaagatggaacaacattgtagatggtctatcatagaccttattaattttttaaatttaaccattagatctattt 325  Q
    |||||||| ||||||| || | ||||  |||||| ||||| ||| | ||||||||||||||||||||||| || ||||||| |||||||||    
T  34438526 ttttaacctcaaatgtctatggtggactaacattatagatagtccaccatagaccttattaattttttaatttcaaccatttgatctattt 34438616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 135 - 187
Target Start/End: Complemental strand, 3921224 - 3921172
Alignment:
Q  135 aattaattttcagttttcattttggtcccataactaataaaactcacgttttg 187  Q
    ||||||||||||||||||||||||||| ||||| ||||||||| || ||||||    
T  3921224 aattaattttcagttttcattttggtctcataaataataaaacccaagttttg 3921172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 110 - 178
Target Start/End: Original strand, 7053178 - 7053246
Alignment:
Q  110 ggcttaataagtcatttgatcctccaattaattttcagttttcattttggtcccataactaataaaact 178  Q
    ||||||||| |||||||  ||| | |||||||||||||||| ||||||||| |||||| ||||||||||    
T  7053178 ggcttaataggtcattttttcccctaattaattttcagtttacattttggttccataattaataaaact 7053246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 28590995 - 28590943
Alignment:
Q  138 taattttcagttttcattttggtcccataactaataaaactcacgttttggtc 190  Q
    |||||| ||| ||||||||||||||||||| |||||||||||| |||||||||    
T  28590995 taatttccagctttcattttggtcccataaataataaaactcatgttttggtc 28590943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 129 - 190
Target Start/End: Original strand, 2310940 - 2311001
Alignment:
Q  129 tcctccaattaattttcagttttcattttggtcccataactaataaaactcacgttttggtc 190  Q
    ||||| |||||||||  ||||||||||||||||||| || |||||||||  |||||||||||    
T  2310940 tcctctaattaatttcaagttttcattttggtcccacaattaataaaacgtacgttttggtc 2311001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 110 - 190
Target Start/End: Complemental strand, 40724960 - 40724882
Alignment:
Q  110 ggcttaataagtcatttgatcctccaattaattttcagttttcattttggtcccataactaataaaactcacgttttggtc 190  Q
    ||||||||| |||||||| |||   ||||||||| ||||||| |||||| |||||  |||||||||||||| |||||||||    
T  40724960 ggcttaataggtcatttggtcccttaattaatttgcagtttttattttgatccca--actaataaaactcatgttttggtc 40724882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 129 - 190
Target Start/End: Original strand, 40792768 - 40792829
Alignment:
Q  129 tcctccaattaattttcagttttcattttggtcccataactaataaaactcacgttttggtc 190  Q
    ||||| |||||||||| ||||||||||||||||||| || |||||||||  || ||||||||    
T  40792768 tcctctaattaattttaagttttcattttggtcccacaattaataaaacatacattttggtc 40792829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 315
Target Start/End: Original strand, 56296313 - 56296394
Alignment:
Q  235 ttttaaccccaaatgtttaagatggaacaacattgtagatggtctatcatagaccttattaa-ttttttaaatttaaccatt 315  Q
    ||||||||| |||||| |||| |||| ||||||  ||| ||||||| ||||||||||| ||| |||||||| ||||||||||    
T  56296313 ttttaaccctaaatgtctaaggtggaccaacatcataggtggtctaccatagaccttactaagttttttaattttaaccatt 56296394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 326
Target Start/End: Original strand, 27847795 - 27847891
Alignment:
Q  230 gttaattttaaccccaaatgtttaagatggaacaacattgtagatggtctatcatagaccttattaattttttaaatttaaccattagatctatttt 326  Q
    ||||| ||||||||||||||| || | |||  ||| ||| ||||| ||| | |||||||||||||||||||| || ||||||| || ||||| ||||    
T  27847795 gttaagtttaaccccaaatgtatatggtgggccaagattatagatagtccaccatagaccttattaatttttcaattttaaccctttgatctttttt 27847891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 38695569 - 38695621
Alignment:
Q  138 taattttcagttttcattttggtcccataactaataaaactcacgttttggtc 190  Q
    ||||||||| ||||||||||| ||||||| ||||||||| ||| |||||||||    
T  38695569 taattttcaattttcattttgatcccatatctaataaaaatcatgttttggtc 38695621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 138 - 177
Target Start/End: Complemental strand, 1190282 - 1190243
Alignment:
Q  138 taattttcagttttcattttggtcccataactaataaaac 177  Q
    ||||||| |||||||||||||||||||||| |||||||||    
T  1190282 taattttaagttttcattttggtcccataattaataaaac 1190243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 32 - 95
Target Start/End: Complemental strand, 13860460 - 13860397
Alignment:
Q  32 gttatattgtcggtgtcaatgaaaaaaataattctggttagtttgatttattataatttaaaat 95  Q
    ||||||||||  || ||| ||||| |||||||  ||||||||||||||| ||||||||||||||    
T  13860460 gttatattgtttgtttcattgaaataaataatcatggttagtttgatttgttataatttaaaat 13860397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 230 - 385
Target Start/End: Complemental strand, 28657116 - 28656961
Alignment:
Q  230 gttaattttaaccccaaatgtttaagatggaacaacattgtagatggtctatcatagaccttattaattttttaaatttaaccattagatctatttttca 329  Q
    ||||| ||||||||||||||| | || |||| |||| |||||| || || | | ||||||||||||||||||||| || | |  || ||||| |||||||    
T  28657116 gttaactttaaccccaaatgtcttaggtggaccaaccttgtaggtgatccaccgtagaccttattaattttttaatttcatctttttgatctttttttca 28657017  T
Q  330 aaacaaaaaacgttagatcaaaaaggtctattgtatcatacaatgaaccatcaaca 385  Q
    ||| |  ||  | |||||||   | || ||||||||  ||||||||||||||||||    
T  28657016 aaaaaggaacggctagatcatttaagtatattgtatgttacaatgaaccatcaaca 28656961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 111 - 190
Target Start/End: Complemental strand, 34328494 - 34328415
Alignment:
Q  111 gcttaataagtcatttgatcctccaattaattttcagttttcattttggtcccataactaataaaactcacgttttggtc 190  Q
    ||||||||||| ||||| ||| | ||||||||||||| ||| ||||| ||| ||||| |||||||| ||| | |||||||    
T  34328494 gcttaataagttatttggtccgctaattaattttcagattttattttagtctcataattaataaaattcatgctttggtc 34328415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 308
Target Start/End: Original strand, 2162727 - 2162805
Alignment:
Q  230 gttaattttaaccccaaatgtttaagatggaacaacattgtagatggtctatcatagaccttattaattttttaaattt 308  Q
    ||||| |||||||| |||| | |||| | || ||||||| ||| ||||| | ||||||||||||||||||||| |||||    
T  2162727 gttaagtttaaccctaaatatgtaaggttgaccaacattttaggtggtccaccatagaccttattaattttttcaattt 2162805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 90
Target Start/End: Complemental strand, 554714 - 554657
Alignment:
Q  33 ttatattgtcggtgtcaatgaaaaaaataattctggttagtttgatttattataattt 90  Q
    ||||||||| ||||||| ||||| | || ||  |||||||||||||||||||||||||    
T  554714 ttatattgttggtgtcattgaaatagatgatcatggttagtttgatttattataattt 554657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 40445390 - 40445443
Alignment:
Q  137 ttaattttcagttttcattttggtcccataactaataaaactcacgttttggtc 190  Q
    ||||||| ||| ||||||| ||||||||||| |||||||| | |||||||||||    
T  40445390 ttaatttacaggtttcattatggtcccataattaataaaagttacgttttggtc 40445443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 325
Target Start/End: Original strand, 2311115 - 2311167
Alignment:
Q  274 tggtctatcatagaccttattaat-tttttaaatttaaccattagatctattt 325  Q
    ||||||||| |||||||||||||| || |||| |||||||||| |||||||||    
T  2311115 tggtctatcgtagaccttattaatattgttaattttaaccattcgatctattt 2311167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 151; Significance: 9e-80; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 110 - 404
Target Start/End: Original strand, 10977020 - 10977314
Alignment:
Q  110 ggcttaataagtcatttgatcctccaattaattttcagttttcattttggtcccataactaataaaactcacgttttggtcagccaattttacgtccgtc 209  Q
    ||||||||| |||||||||||| | ||||||||| || ||||||| ||||||| |||||||||||||| ||||||| ||||   ||||||||||||||||    
T  10977020 ggcttaataggtcatttgatcccctaattaatttgcaattttcatcttggtcctataactaataaaacccacgtttcggtccctcaattttacgtccgtc 10977119  T
Q  210 agtcaaattggtcccattccgttaattttaaccccaaatgtttaagatggaacaacattgtagatggtctatcatagaccttattaattttttaaattta 309  Q
    |||||||||||||   ||||||||||||||||  ||||||| ||||||||| ||||||||||  ||||||| |||||||| |||||||||||||| ||||    
T  10977120 agtcaaattggtcatgttccgttaattttaacttcaaatgtctaagatggaccaacattgtatgtggtctaccatagaccatattaattttttaatttta 10977219  T
Q  310 accattagatctatttttcaaaacaaaaaacgttagatcaaaaaggtctattgtatcatacaatgaaccatcaacaactaattatttttcccttt 404  Q
     ||||| ||||||||||| ||||||  || |||| ||||| | | |||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  10977220 tccatttgatctatttttgaaaacaggaaccgttggatcatatatgtctattgtatcatacgatgaaccatcaacaactaattattttccccttt 10977314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 113 - 302
Target Start/End: Original strand, 32757826 - 32758015
Alignment:
Q  113 ttaataagtcatttgatcctccaattaattttcagttttcattttggtcccataactaataaaactcacgttttggtcagccaattttacgtccgtcagt 212  Q
    |||||| |||||||| |||  ||| |||||| ||||||||||||||||||||||| |||||||||||| |||||||||   ||| || || |||| | ||    
T  32757826 ttaataggtcatttggtccctcaaataatttccagttttcattttggtcccataaataataaaactcatgttttggtccctcaagttcacctccgccggt 32757925  T
Q  213 caaattggtcccattccgttaattttaaccccaaatgtttaagatggaacaacattgtagatggtctatcatagaccttattaatttttt 302  Q
    |||||   |||      ||||| ||||||||||||||| || | |||| |||||| |||||| ||| | |||||||||||||||||||||    
T  32757926 caaataaatccatgggtgttaactttaaccccaaatgtctatggtggaccaacatggtagatagtccaccatagaccttattaatttttt 32758015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 110 - 187
Target Start/End: Complemental strand, 8523864 - 8523787
Alignment:
Q  110 ggcttaataagtcatttgatcctccaattaattttcagttttcattttggtcccataactaataaaactcacgttttg 187  Q
    ||||||||| |||||||| ||| | |||||||||  ||||||||||||||||||||||||||||||||||| ||||||    
T  8523864 ggcttaataggtcatttggtcccctaattaatttcaagttttcattttggtcccataactaataaaactcatgttttg 8523787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 106 - 190
Target Start/End: Original strand, 8521249 - 8521333
Alignment:
Q  106 ttatggcttaataagtcatttgatcctccaattaattttcagttttcattttggtcccataactaataaaactcacgttttggtc 190  Q
    ||||| ||||||| |||||||| |||   |||||||||  ||||||||||||||||||||||||||||||||||| |||||||||    
T  8521249 ttatgacttaataggtcatttggtcccttaattaatttcaagttttcattttggtcccataactaataaaactcatgttttggtc 8521333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 227 - 310
Target Start/End: Complemental strand, 20539347 - 20539264
Alignment:
Q  227 tccgttaattttaaccccaaatgtttaagatggaacaacattgtagatggtctatcatagaccttattaattttttaaatttaa 310  Q
    |||||||| |||||| |||||| | |||| |||| ||| ||||||| ||||||||||||||||||||||||||||| |||||||    
T  20539347 tccgttaagtttaacaccaaatatataaggtggaccaatattgtaggtggtctatcatagaccttattaatttttttaatttaa 20539264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 110 - 216
Target Start/End: Complemental strand, 10978397 - 10978291
Alignment:
Q  110 ggcttaataagtcatttgatcctccaattaattttcagttttcattttggtcccataactaataaaactcacgttttggtcagccaattttacgtccgtc 209  Q
    |||||||||  ||||||| ||| | ||||||||| || ||||||||||||||| |||| ||||||||| ||||||| ||||   ||||| ||||||||||    
T  10978397 ggcttaatagatcatttggtcccctaattaatttccaattttcattttggtcctataaataataaaacccacgtttcggtccctcaattatacgtccgtc 10978298  T
Q  210 agtcaaa 216  Q
    |||||||    
T  10978297 agtcaaa 10978291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 109 - 189
Target Start/End: Original strand, 1009181 - 1009261
Alignment:
Q  109 tggcttaataagtcatttgatcctccaattaattttcagttttcattttggtcccataactaataaaactcacgttttggt 189  Q
    |||||||||| |||||||| | | | |||||||||  ||||||||||||||| ||||||||||||||||||| ||||||||    
T  1009181 tggcttaataggtcatttggttccctaattaatttcaagttttcattttggttccataactaataaaactcatgttttggt 1009261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 110 - 190
Target Start/End: Complemental strand, 1010482 - 1010402
Alignment:
Q  110 ggcttaataagtcatttgatcctccaattaattttcagttttcattttggtcccataactaataaaactcacgttttggtc 190  Q
    ||||||||| |||||||| |||   |||||||||  |||||| |||||||||||||||||||||||||||| |||||||||    
T  1010482 ggcttaataggtcatttggtcccttaattaatttcaagtttttattttggtcccataactaataaaactcatgttttggtc 1010402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 110 - 190
Target Start/End: Complemental strand, 32759166 - 32759086
Alignment:
Q  110 ggcttaataagtcatttgatcctccaattaattttcagttttcattttggtcccataactaataaaactcacgttttggtc 190  Q
    ||||||||| |||||||| |||  ||| |||||||||||||||||||| || |||||| |||||||||||| |||||||||    
T  32759166 ggcttaataggtcatttggtccctcaaataattttcagttttcattttagttccataaataataaaactcatgttttggtc 32759086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 306 - 407
Target Start/End: Complemental strand, 14356308 - 14356207
Alignment:
Q  306 tttaaccattagatctatttttcaaaacaaaaaacgttagatcaaaaaggtctattgtatcatacaatgaaccatcaacaactaattatttttccctttc 405  Q
    |||||||||| |||||||||||||||||||  | ||||  |||| ||| ||||||||||| |||   |||| ||||||||||| ||||||||  ||||||    
T  14356308 tttaaccatttgatctatttttcaaaacaaggatcgttgtatcacaaaagtctattgtattatatggtgaatcatcaacaacttattattttctcctttc 14356209  T
Q  406 tt 407  Q
    ||    
T  14356208 tt 14356207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 186
Target Start/End: Original strand, 26047814 - 26047887
Alignment:
Q  113 ttaataagtcatttgatcctccaattaattttcagttttcattttggtcccataactaataaaactcacgtttt 186  Q
    |||||| |||||||| ||||| |||||||||  | |||| ||||||||| |||||||||||||||||| |||||    
T  26047814 ttaataggtcatttggtcctctaattaatttcaaatttttattttggtctcataactaataaaactcatgtttt 26047887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 310
Target Start/End: Original strand, 9169583 - 9169783
Alignment:
Q  109 tggcttaataagtcatttgatcctccaattaattttcagttttcattttggtcccataactaataaaactc-acgttttggtcagccaattttacgtccg 207  Q
    |||||||||| ||||||||  ||   |||||||||  |||||||||||| ||||||||| ||||||||||| | |||||||||    |||| |   ||||    
T  9169583 tggcttaataggtcatttggccccttaattaatttcaagttttcattttagtcccataattaataaaactctatgttttggtcttttaattgtctctccg 9169682  T
Q  208 tcagtcaaattggtcccattccgttaattttaaccccaaatgtttaagatggaacaacattgtagatggtctatcatagaccttattaattttttaaatt 307  Q
    || |||||||   |||| |   ||||| ||||||||||||||| ||   |||| ||| ||| ||||||||| |||||||||| |||||| ||||||||||    
T  9169683 tcggtcaaataaatccc-tgaagttaactttaaccccaaatgtctatagtggaccaatattatagatggtccatcatagaccgtattaa-tttttaaatt 9169780  T
Q  308 taa 310  Q
    |||    
T  9169781 taa 9169783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 129 - 190
Target Start/End: Original strand, 30857817 - 30857878
Alignment:
Q  129 tcctccaattaattttcagttttcattttggtcccataactaataaaactcacgttttggtc 190  Q
    ||||| |||||||||| ||||||||||||||||||| || |||||||||  | |||||||||    
T  30857817 tcctctaattaattttaagttttcattttggtcccacaattaataaaacgtatgttttggtc 30857878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 135 - 176
Target Start/End: Complemental strand, 34899044 - 34899003
Alignment:
Q  135 aattaattttcagttttcattttggtcccataactaataaaa 176  Q
    |||||||||||| |||||||||||||||||||| ||||||||    
T  34899044 aattaattttcatttttcattttggtcccataagtaataaaa 34899003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 129 - 190
Target Start/End: Complemental strand, 39605568 - 39605507
Alignment:
Q  129 tcctccaattaattttcagttttcattttggtcccataactaataaaactcacgttttggtc 190  Q
    ||||| |||||||||  ||||||||||||||||||| || |||||||||  |||||||||||    
T  39605568 tcctctaattaatttcaagttttcattttggtcccacaattaataaaacatacgttttggtc 39605507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 190
Target Start/End: Complemental strand, 22049218 - 22049174
Alignment:
Q  146 agttttcattttggtcccataactaataaaactcacgttttggtc 190  Q
    |||||||||||||||||||||| |||||||||  |||||||||||    
T  22049218 agttttcattttggtcccataattaataaaacgtacgttttggtc 22049174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 135 - 190
Target Start/End: Original strand, 22047755 - 22047810
Alignment:
Q  135 aattaattttcagttttcattttggtcccataactaataaaactcacgttttggtc 190  Q
    |||||||||  ||||||||||||||||||| || |||||||||  |||||||||||    
T  22047755 aattaatttcaagttttcattttggtcccacaattaataaaacgtacgttttggtc 22047810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 90
Target Start/End: Original strand, 5770317 - 5770375
Alignment:
Q  32 gttatattgtcggtgtcaatgaaaaaaataattctggttagtttgatttattataattt 90  Q
    |||||||||| ||||| | ||||| | |||||  |||||||||||||||||||||||||    
T  5770317 gttatattgttggtgtaattgaaatatataataatggttagtttgatttattataattt 5770375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 176
Target Start/End: Complemental strand, 9170985 - 9170944
Alignment:
Q  135 aattaattttcagttttcattttggtcccataactaataaaa 176  Q
    ||||||||||||||||||||||||||| ||||| ||| ||||    
T  9170985 aattaattttcagttttcattttggtctcataattaaaaaaa 9170944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 176
Target Start/End: Complemental strand, 11846364 - 11846323
Alignment:
Q  135 aattaattttcagttttcattttggtcccataactaataaaa 176  Q
    ||||||||| ||| ||||||||||||| ||||||||||||||    
T  11846364 aattaatttacaggtttcattttggtctcataactaataaaa 11846323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 308
Target Start/End: Original strand, 15856653 - 15856726
Alignment:
Q  235 ttttaaccccaaatgtttaagatggaacaacattgtagatggtctatcatagaccttattaattttttaaattt 308  Q
    ||||||||| |||||| |||| |||| ||||||| ||| ||||| | ||||||||||| ||| ||||| |||||    
T  15856653 ttttaaccctaaatgtctaaggtggaccaacattataggtggtccaccatagaccttactaagttttttaattt 15856726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 134; Significance: 1e-69; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 110 - 407
Target Start/End: Original strand, 9472622 - 9472918
Alignment:
Q  110 ggcttaataagtcatttgatcctccaattaattttcagttttcattttggtcccataactaataaaactcacgttttggtcagccaattttacgtccgtc 209  Q
    ||||||||| |||||||||||| | ||||||||| || |||| |||||||||| |||||| ||||||| ||||||| ||||   ||||| ||||| ||||    
T  9472622 ggcttaataggtcatttgatcccctaattaatttgcaatttttattttggtcctataacttataaaacccacgtttcggtccctcaattatacgttcgtc 9472721  T
Q  210 agtcaaattggtcccattccgttaattttaaccccaaatgtttaagatggaacaacattgtagatggtctatcatagaccttattaattttttaaattta 309  Q
    ||||||||||||||  |||||||||||||||| |||||| | ||||||||| ||||||||||  ||||||| |||||||| |||||||||||||| ||||    
T  9472722 agtcaaattggtcctgttccgttaattttaactccaaatatctaagatggaccaacattgtatgtggtctaccatagaccatattaattttttaatttta 9472821  T
Q  310 accattagatctatttttcaaaacaaaaaacgttagatcaaaaaggtctattgtatcatacaatgaaccatcaacaactaattatttttccctttctt 407  Q
     ||||| ||||||||||| ||||||  || | || ||||| | | |||||||||||| ||| |||||||||||||||||||||||||| |||||||||    
T  9472822 tccatttgatctatttttgaaaacaggaaccatttgatcatatatgtctattgtatc-tacgatgaaccatcaacaactaattattttcccctttctt 9472918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 110 - 302
Target Start/End: Original strand, 34147134 - 34147326
Alignment:
Q  110 ggcttaataagtcatttgatcctccaattaattttcagttttcattttggtcccataactaataaaactcacgttttggtcagccaattttacgtccgtc 209  Q
    ||||||||| |||||||| |||  ||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||   ||| || || |||| |    
T  34147134 ggcttaataggtcatttggtccctcaaataattttcagttttcattttggtcccataagtaataaaactcatgttttggtccctcaagttcacctccgcc 34147233  T
Q  210 agtcaaattggtcccattccgttaattttaaccccaaatgtttaagatggaacaacattgtagatggtctatcatagaccttattaatttttt 302  Q
    ||||||||   |||      ||||| ||||||||||||||| || | |||| |||||| |||||| ||| | |||||||||||||||||||||    
T  34147234 agtcaaataaatccatgggtgttaactttaaccccaaatgtctatggtggaccaacatggtagatagtccaccatagaccttattaatttttt 34147326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 110 - 181
Target Start/End: Original strand, 35061269 - 35061340
Alignment:
Q  110 ggcttaataagtcatttgatcctccaattaattttcagttttcattttggtcccataactaataaaactcac 181  Q
    ||||||||| ||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  35061269 ggcttaataggtcatttaatcccctaattaattttcagttttcattttggtcccataactaataaaactcac 35061340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 109 - 217
Target Start/End: Original strand, 35903505 - 35903613
Alignment:
Q  109 tggcttaataagtcatttgatcctccaattaattttcagttttcattttggtcccataactaataaaactcacgttttggtcagccaattttacgtccgt 208  Q
    |||||||||| |||||||| ||||  |||||||||  ||||||||||||||||||||||||||||||| ||| |||||||||   ||||| ||  |||||    
T  35903505 tggcttaataggtcatttggtcctttaattaatttcaagttttcattttggtcccataactaataaaagtcatgttttggtccctcaattatatctccgt 35903604  T
Q  209 cagtcaaat 217  Q
    |||||||||    
T  35903605 cagtcaaat 35903613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 110 - 224
Target Start/End: Complemental strand, 9474170 - 9474056
Alignment:
Q  110 ggcttaataagtcatttgatcctccaattaattttcagttttcattttggtcccataactaataaaactcacgttttggtcagccaattttacgtccgtc 209  Q
    ||||||||| |||||||| ||| | |||||||||||| ||||||||||| ||| |||| |||| |||| ||||||| |||||  ||||| |||||| |||    
T  9474170 ggcttaataggtcatttggtcccctaattaattttcaattttcattttgttcctataaataatgaaacccacgtttcggtcactcaattatacgtctgtc 9474071  T
Q  210 agtcaaattggtccc 224  Q
    ||||||| |||||||    
T  9474070 agtcaaagtggtccc 9474056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 110 - 190
Target Start/End: Complemental strand, 30749411 - 30749331
Alignment:
Q  110 ggcttaataagtcatttgatcctccaattaattttcagttttcattttggtcccataactaataaaactcacgttttggtc 190  Q
    ||||||||||||||||||||   | ||||||||| ||||||||||||| ||||||||| |||||||||||| |||||||||    
T  30749411 ggcttaataagtcatttgatttcctaattaatttccagttttcattttagtcccataattaataaaactcatgttttggtc 30749331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 138 - 308
Target Start/End: Complemental strand, 2277559 - 2277389
Alignment:
Q  138 taattttcagttttcattttggtcccataactaataaaactcacgttttggtcagccaattttacgtccgtcagtcaaattggtcccattccgttaattt 237  Q
    |||||| ||||||||||||||||||||||| |||||||||| | |||||||||   ||| || || || ||| |||||||   |||      ||||| ||    
T  2277559 taatttccagttttcattttggtcccataagtaataaaacttatgttttggtccctcaagttcacctcagtcggtcaaataaatccatgggagttaactt 2277460  T
Q  238 taaccccaaatgtttaagatggaacaacattgtagatggtctatcatagaccttattaattttttaaattt 308  Q
    ||||||||||||| || | |||| |||||| |||||| ||| | ||||||||||||||||||||| |||||    
T  2277459 taaccccaaatgtctatggtggaccaacatggtagatagtccaccatagaccttattaattttttcaattt 2277389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 110 - 190
Target Start/End: Original strand, 2276279 - 2276359
Alignment:
Q  110 ggcttaataagtcatttgatcctccaattaattttcagttttcattttggtcccataactaataaaactcacgttttggtc 190  Q
    ||||||||| |||||||| |||  ||| |||||||||||||||||||| |||| |||| |||||||||||| |||||||||    
T  2276279 ggcttaataggtcatttggtccctcaaataattttcagttttcattttagtcctataagtaataaaactcatgttttggtc 2276359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 110 - 190
Target Start/End: Complemental strand, 34148478 - 34148398
Alignment:
Q  110 ggcttaataagtcatttgatcctccaattaattttcagttttcattttggtcccataactaataaaactcacgttttggtc 190  Q
    ||||||||| |||||||| |||  ||| |||||||||||||||||||| || |||||| |||||||||||| |||||||||    
T  34148478 ggcttaataggtcatttggtccctcaaataattttcagttttcattttagttccataaataataaaactcatgttttggtc 34148398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 110 - 186
Target Start/End: Complemental strand, 35061433 - 35061358
Alignment:
Q  110 ggcttaataagtcatttgatcctccaattaattttcagttttcattttggtcccataactaataaaactcacgtttt 186  Q
    ||||||||| |||||||| |||   |||||||||  ||||||||||||||||| |||||||||||||||||||||||    
T  35061433 ggcttaataggtcatttggtcccttaattaatttgaagttttcattttggtcc-ataactaataaaactcacgtttt 35061358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 113 - 187
Target Start/End: Original strand, 34512815 - 34512889
Alignment:
Q  113 ttaataagtcatttgatcctccaattaattttcagttttcattttggtcccataactaataaaactcacgttttg 187  Q
    |||||| || ||||| ||| | ||||||||  ||||||||||||||||||||||| |||||||||||| ||||||    
T  34512815 ttaataggttatttggtcccctaattaattaccagttttcattttggtcccataattaataaaactcatgttttg 34512889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 297
Target Start/End: Original strand, 42366976 - 42367053
Alignment:
Q  220 gtcccattccgttaattttaaccccaaatgtttaagatggaacaacattgtagatggtctatcatagaccttattaat 297  Q
    |||| |||||||||||| ||||||| ||||| ||||||||| || ||||| || |||||||  |||||||||||||||    
T  42366976 gtccaattccgttaattctaacccctaatgtgtaagatggaccatcattgaaggtggtctacgatagaccttattaat 42367053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 110 - 190
Target Start/End: Complemental strand, 34513671 - 34513591
Alignment:
Q  110 ggcttaataagtcatttgatcctccaattaattttcagttttcattttggtcccataactaataaaactcacgttttggtc 190  Q
    ||||||||| |||||||| ||| | ||||||||  || ||||||||||||| |||||| |||||||||||| |||| ||||    
T  34513671 ggcttaataggtcatttggtcccctaattaattaccaattttcattttggttccataattaataaaactcatgtttaggtc 34513591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 204 - 299
Target Start/End: Complemental strand, 1149212 - 1149117
Alignment:
Q  204 tccgtcagtcaaattggtcccattccgttaattttaaccccaaatgtttaagatggaacaacattgtagatggtctatcatagaccttattaattt 299  Q
    ||||| ||||||||| |||  |||||||||||||||||  ||||| | ||| ||||| | |||| ||| |||||| | ||||||||||||||||||    
T  1149212 tccgttagtcaaattagtcttattccgttaattttaacatcaaatatctaatatggaccgacatggtaaatggtccaccatagaccttattaattt 1149117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 230 - 297
Target Start/End: Complemental strand, 18971294 - 18971227
Alignment:
Q  230 gttaattttaaccccaaatgtttaagatggaacaacattgtagatggtctatcatagaccttattaat 297  Q
    |||||||||||||| |||| | |||| |||| |||||||||||||||||||   ||||||||||||||    
T  18971294 gttaattttaacccaaaatatataaggtggaccaacattgtagatggtctactgtagaccttattaat 18971227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 186
Target Start/End: Original strand, 33995948 - 33996021
Alignment:
Q  112 cttaataagtcatttgatcctccaattaattttcagttttcattttggtcccataactaataaaactcacgtttt 186  Q
    ||||||| |||||||| |||   |||||||||| |||||||||||| || ||||||||||||||||||| |||||    
T  33995948 cttaataggtcatttggtcccttaattaattttaagttttcatttttgt-ccataactaataaaactcatgtttt 33996021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 27913144 - 27913205
Alignment:
Q  32 gttatattgtcggtgtcaatgaaaaaaataattctggttagtttgatttattataatttaaa 93  Q
    |||||||||| ||||||| ||||| | |||||  ||||||||||||||| ||||||||||||    
T  27913144 gttatattgttggtgtcactgaaatagataatcatggttagtttgatttgttataatttaaa 27913205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 302
Target Start/End: Original strand, 102113 - 102185
Alignment:
Q  230 gttaattttaaccccaaatgtttaagatggaacaacattgtagatggtctatcatagaccttattaatttttt 302  Q
    ||||| ||||||||||||||| |||  ||||  ||||||| || ||||| | |||||||||||||||||||||    
T  102113 gttaactttaaccccaaatgtgtaatgtggattaacattgcaggtggtccaccatagaccttattaatttttt 102185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 348
Target Start/End: Complemental strand, 32470531 - 32470455
Alignment:
Q  273 atggtctatcatagaccttattaatttt-ttaaatttaaccattagatctatttttcaaaacaaaaaacgttagatc 348  Q
    |||||| ||| ||||||||||||||||| |||| |||||||||| ||||||||| ||| || | ||| |||||||||    
T  32470531 atggtccatcgtagaccttattaattttgttaattttaaccattcgatctatttatcataaaagaaaccgttagatc 32470455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 190
Target Start/End: Complemental strand, 35904861 - 35904781
Alignment:
Q  110 ggcttaataagtcatttgatcctccaattaattttcagttttcattttggtcccataactaataaaactcacgttttggtc 190  Q
    ||||||||| |||||||  ||||  || ||||||  | |||||||||||| ||||||| |||||||||||| |||||||||    
T  35904861 ggcttaataggtcatttagtcctttaaataatttctaattttcattttggccccataagtaataaaactcatgttttggtc 35904781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 38702258 - 38702170
Alignment:
Q  1 aaaaaataagaatttagattatannnnnnnngttatattgtcggtgtcaatgaaaaaaataattctggttagtttgatttattataattt 90  Q
    |||||||||||||||||||||||        |||||||||| ||| ||| ||||| |||||||  | |||||||||||||||||||||||    
T  38702258 aaaaaataagaatttagattatatattttt-gttatattgttggtttcattgaaataaataatcattgttagtttgatttattataattt 38702170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 225 - 308
Target Start/End: Original strand, 1409754 - 1409837
Alignment:
Q  225 attccgttaattttaaccccaaatgtttaagatggaacaacattgtagatggtctatcatagaccttattaattttttaaattt 308  Q
    |||||||||||||||||||| || || |||||| || ||  |||| || ||||||| ||||||| |||||||| |||| |||||    
T  1409754 attccgttaattttaacccctaacgtgtaagatagaccataattgaaggtggtctaccatagactttattaatctttttaattt 1409837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 2 - 90
Target Start/End: Original strand, 36080277 - 36080364
Alignment:
Q  2 aaaaataagaatttagattatannnnnnnngttatattgtcggtgtcaatgaaaaaaataattctggttagtttgatttattataattt 90  Q
    ||||||||||||||||||||||        |||||||||| ||| ||| ||||| | |||||| ||||||||||||||| |||||||||    
T  36080277 aaaaataagaatttagattatattttttt-gttatattgttggtttcattgaaatagataattatggttagtttgatttgttataattt 36080364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 135 - 190
Target Start/End: Original strand, 37956972 - 37957027
Alignment:
Q  135 aattaattttcagttttcattttggtcccataactaataaaactcacgttttggtc 190  Q
    |||||||||  | |||||||||||||||||||| |||||||| ||| |||||||||    
T  37956972 aattaatttcaaattttcattttggtcccataagtaataaaattcatgttttggtc 37957027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 90
Target Start/End: Complemental strand, 4652475 - 4652417
Alignment:
Q  32 gttatattgtcggtgtcaatgaaaaaaataattctggttagtttgatttattataattt 90  Q
    |||| ||||| ||||||| |||||||||||||  || |||||||||||| |||||||||    
T  4652475 gttaaattgttggtgtcattgaaaaaaataatcatgattagtttgatttgttataattt 4652417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 304
Target Start/End: Complemental strand, 7753524 - 7753450
Alignment:
Q  230 gttaattttaaccccaaatgtttaagatggaacaacattgtagatggtctatcatagaccttattaattttttaa 304  Q
    ||||| |||||| |||||||| || | |||| ||||||||||| || || | |||||||| ||||||||||||||    
T  7753524 gttaactttaactccaaatgtatatggtggatcaacattgtaggtgatccaccatagaccgtattaattttttaa 7753450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 169
Target Start/End: Original strand, 16289800 - 16289834
Alignment:
Q  135 aattaattttcagttttcattttggtcccataact 169  Q
    ||||||||||||||||||||||||||| |||||||    
T  16289800 aattaattttcagttttcattttggtctcataact 16289834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 190
Target Start/End: Complemental strand, 17460783 - 17460722
Alignment:
Q  129 tcctccaattaattttcagttttcattttggtcccataactaataaaactcacgttttggtc 190  Q
    ||||| |||||||||  ||||||||||||| ||||| || |||||||||  |||||||||||    
T  17460783 tcctctaattaatttcaagttttcattttgatcccacaattaataaaacgtacgttttggtc 17460722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 299
Target Start/End: Original strand, 21664920 - 21664989
Alignment:
Q  230 gttaattttaaccccaaatgtttaagatggaacaacattgtagatggtctatcatagaccttattaattt 299  Q
    ||||| ||||||  ||||||| || | |||| ||||||||||| ||||| |||||||||||| |||||||    
T  21664920 gttaagtttaacttcaaatgtctatggtggaccaacattgtaggtggtcaatcatagaccttgttaattt 21664989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 325
Target Start/End: Original strand, 1083149 - 1083201
Alignment:
Q  274 tggtctatcatagaccttattaatttt-ttaaatttaaccattagatctattt 325  Q
    ||||||||  ||||||||||||||||| |||| |||||||||| |||||||||    
T  1083149 tggtctattgtagaccttattaattttgttaattttaaccattcgatctattt 1083201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 126; Significance: 7e-65; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 151 - 396
Target Start/End: Complemental strand, 5123423 - 5123178
Alignment:
Q  151 tcattttggtcccataactaataaaactcacgttttggtcagccaattttacgtccgtcagtcaaattggtcccattccgttaattttaaccccaaatgt 250  Q
    |||||||||||| ||||||||||||||||||||||| |||  |||||| ||||| ||| ||| |||||||||   ||| ||||||||||||| |||||||    
T  5123423 tcattttggtccgataactaataaaactcacgttttagtcccccaattatacgttcgttagttaaattggtcatgttctgttaattttaacctcaaatgt 5123324  T
Q  251 ttaagatggaacaacattgtagatggtctatcatagaccttattaattttttaaatttaaccattagatctatttttcaaaacaaaaaacgttagatcaa 350  Q
    |||||||||| ||||||||||  ||||||| ||||||||||||||||||||||| |||||||||| ||||||||||| || |||  || |||| ||||      
T  5123323 ttaagatggaccaacattgtatgtggtctaccatagaccttattaattttttaattttaaccatttgatctattttttaacacatgaaccgttggatcgc 5123224  T
Q  351 aaaggtctattgtatcatacaatgaaccatcaacaactaattattt 396  Q
    | |||||||||||||||| || ||||||||||||||||||||||||    
T  5123223 agaggtctattgtatcattcagtgaaccatcaacaactaattattt 5123178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 112 - 190
Target Start/End: Complemental strand, 28909721 - 28909643
Alignment:
Q  112 cttaataagtcatttgatcctccaattaattttcagttttcattttggtcccataactaataaaactcacgttttggtc 190  Q
    ||||||| ||||||   ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  28909721 cttaataggtcattcagtcctctaattaattttcagttttcattttggtcccataactaataaaactcatgttttggtc 28909643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 110 - 190
Target Start/End: Complemental strand, 3455743 - 3455663
Alignment:
Q  110 ggcttaataagtcatttgatcctccaattaattttcagttttcattttggtcccataactaataaaactcacgttttggtc 190  Q
    ||||||||| |||||||| ||| | |||||||||  |||||||||||||||| |||||||||||||||||| |||||||||    
T  3455743 ggcttaataggtcatttggtccccgaattaatttcaagttttcattttggtctcataactaataaaactcatgttttggtc 3455663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 110 - 189
Target Start/End: Original strand, 43173884 - 43173963
Alignment:
Q  110 ggcttaataagtcatttgatcctccaattaattttcagttttcattttggtcccataactaataaaactcacgttttggt 189  Q
    ||||||||| |||||||||||| | ||||||||| || |||||||||||  |||||||||||||||| ||| ||||||||    
T  43173884 ggcttaataggtcatttgatcccctaattaatttccaattttcattttgtccccataactaataaaattcatgttttggt 43173963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 113 - 310
Target Start/End: Complemental strand, 20288339 - 20288142
Alignment:
Q  113 ttaataagtcatttgatcctccaattaattttcagttttcattttggtcccataactaataaaactcacgttttggtcagccaattttacgtccgtcagt 212  Q
    |||||| | |||||| ||| | |||||||||| ||||||||||||| |||||||| |||||||||||| || ||||||   ||| |||   || || |||    
T  20288339 ttaataggccatttggtcccctaattaatttttagttttcattttgatcccataattaataaaactcatgtgttggtccctcaagtttgtctctgttagt 20288240  T
Q  213 caaattggtcccattccgttaattttaaccccaaatgtttaagatggaacaacattgtagatggtctatcatagaccttattaattttttaaatttaa 310  Q
    |||||   ||||   | ||||| |||||| |||||||| || | |||| ||||||| |||||  || | |||||||||||||||||| || |||||||    
T  20288239 caaataaatccctgactgttaagtttaactccaaatgtctatggtggaccaacattatagatattccaccatagaccttattaatttatttaatttaa 20288142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 119 - 183
Target Start/End: Original strand, 5122308 - 5122372
Alignment:
Q  119 agtcatttgatcctccaattaattttcagttttcattttggtcccataactaataaaactcacgt 183  Q
    ||||||||| ||||||||||||||| || ||||||||||| | |||||| |||||||||||||||    
T  5122308 agtcatttggtcctccaattaatttccatttttcattttgcttccataattaataaaactcacgt 5122372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 236 - 327
Target Start/End: Complemental strand, 53624354 - 53624263
Alignment:
Q  236 tttaaccccaaatgtttaagatggaacaacattgtagatggtctatcatagaccttattaattttttaaatttaaccattagatctattttt 327  Q
    ||||||||||||||| || | |||| ||||||| ||||| ||| | |||||||||||||||||||| || ||||||| || ||||| |||||    
T  53624354 tttaaccccaaatgtatatggtggaccaacattatagatagtccaccatagaccttattaatttttcaattttaaccttttgatcttttttt 53624263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 230 - 332
Target Start/End: Complemental strand, 21515609 - 21515507
Alignment:
Q  230 gttaattttaaccccaaatgtttaagatggaacaacattgtagatggtctatcatagaccttattaattttttaaatttaaccattagatctatttttca 329  Q
    ||||| |||||| |||||||| | || |||| ||| ||||||| ||||| | |||| |||||||||||||||||| |  | ||||| |||||||||||||    
T  21515609 gttaactttaactccaaatgtattaggtggatcaatattgtaggtggtccaccatataccttattaattttttaattccagccatttgatctatttttca 21515510  T
Q  330 aaa 332  Q
    |||    
T  21515509 aaa 21515507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 230 - 308
Target Start/End: Original strand, 46495612 - 46495690
Alignment:
Q  230 gttaattttaaccccaaatgtttaagatggaacaacattgtagatggtctatcatagaccttattaattttttaaattt 308  Q
    ||||| ||||| ||||||||| | || || | ||||||||||| ||||| ||||||||||||||||||||||| |||||    
T  46495612 gttaactttaaacccaaatgtattaggtgaaccaacattgtaggtggtccatcatagaccttattaatttttttaattt 46495690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 43174797 - 43174744
Alignment:
Q  137 ttaattttcagttttcattttggtcccataactaataaaactcacgttttggtc 190  Q
    |||||||| |||||||||||||  |||||||||||||||||||| |||||||||    
T  43174797 ttaattttaagttttcattttgaccccataactaataaaactcatgttttggtc 43174744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 187
Target Start/End: Original strand, 3208501 - 3208559
Alignment:
Q  129 tcctccaattaattttcagttttcattttggtcccataactaataaaactcacgttttg 187  Q
    ||||| ||||||||| || |||||||||||||||||||| |||||||||  ||||||||    
T  3208501 tcctctaattaatttccatttttcattttggtcccataattaataaaacgtacgttttg 3208559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 110 - 163
Target Start/End: Complemental strand, 20314853 - 20314800
Alignment:
Q  110 ggcttaataagtcatttgatcctccaattaattttcagttttcattttggtccc 163  Q
    |||||||||  ||||||||||| | ||||||||||||| |||||||||||||||    
T  20314853 ggcttaatagatcatttgatcccctaattaattttcagctttcattttggtccc 20314800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 110 - 163
Target Start/End: Complemental strand, 20336746 - 20336693
Alignment:
Q  110 ggcttaataagtcatttgatcctccaattaattttcagttttcattttggtccc 163  Q
    |||||| || |||||||| ||| | |||||||||||||||||||||||||||||    
T  20336746 ggcttactaggtcatttggtcccctaattaattttcagttttcattttggtccc 20336693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 315
Target Start/End: Complemental strand, 43346443 - 43346362
Alignment:
Q  235 ttttaaccccaaatgtttaagatggaacaacattgtagatggtctatcatagacctta-ttaattttttaaatttaaccatt 315  Q
    ||||||||| |||||| |||| |||| ||||||| ||| ||||| | ||||||||||| | |||||||||| ||||||||||    
T  43346443 ttttaaccctaaatgtctaaggtggaccaacattataggtggtccaccatagaccttactaaattttttaattttaaccatt 43346362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 310
Target Start/End: Complemental strand, 20336655 - 20336575
Alignment:
Q  230 gttaattttaaccccaaatgtttaagatggaacaacattgtagatggtctatcatagaccttattaattttttaaatttaa 310  Q
    ||||| |||||| |||||||| || | |||| ||||||| ||||| ||| | |||||||||||||||||| || |||||||    
T  20336655 gttaagtttaactccaaatgtctatgttggaccaacattatagatagtccaccatagaccttattaatttatttaatttaa 20336575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 190
Target Start/End: Complemental strand, 53194952 - 53194908
Alignment:
Q  146 agttttcattttggtcccataactaataaaactcacgttttggtc 190  Q
    |||||||||||||||||||||| |||||||||  |||||||||||    
T  53194952 agttttcattttggtcccataattaataaaacgtacgttttggtc 53194908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 241 - 308
Target Start/End: Complemental strand, 21074267 - 21074200
Alignment:
Q  241 ccccaaatgtttaagatggaacaacattgtagatggtctatcatagaccttattaattttttaaattt 308  Q
    |||||||||| || | |||| ||||||| ||||| ||| | ||||||||||||||||||||| |||||    
T  21074267 ccccaaatgtatatggtggaccaacattatagatagtccaccatagaccttattaattttttcaattt 21074200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 138 - 177
Target Start/End: Original strand, 37735332 - 37735371
Alignment:
Q  138 taattttcagttttcattttggtcccataactaataaaac 177  Q
    ||||||| |||||||||||||||||||||| |||||||||    
T  37735332 taattttaagttttcattttggtcccataattaataaaac 37735371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 327
Target Start/End: Complemental strand, 20314762 - 20314664
Alignment:
Q  230 gttaattttaaccccaaatgtttaagatggaacaacattgtagatggtctatcatagaccttattaattt-tttaaatttaaccattagatctattttt 327  Q
    ||||| |||||| |||||||| || | | || ||||||| ||||| ||| | |||||||||||||||||| ||||| || ||||||| ||| |||||||    
T  20314762 gttaagtttaactccaaatgtctatgttagaccaacattatagatagtccaccatagaccttattaatttatttaatttaaaccatttgatttattttt 20314664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 186
Target Start/End: Original strand, 50809457 - 50809495
Alignment:
Q  148 ttttcattttggtcccataactaataaaactcacgtttt 186  Q
    |||||||||||||||||||| ||||||||| ||||||||    
T  50809457 ttttcattttggtcccataattaataaaacacacgtttt 50809495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 186
Target Start/End: Complemental strand, 50810914 - 50810876
Alignment:
Q  148 ttttcattttggtcccataactaataaaactcacgtttt 186  Q
    |||||||||||||||||||| ||||||||| ||||||||    
T  50810914 ttttcattttggtcccataattaataaaacacacgtttt 50810876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 186
Target Start/End: Original strand, 50864950 - 50864988
Alignment:
Q  148 ttttcattttggtcccataactaataaaactcacgtttt 186  Q
    |||||||||||||||||||| ||||||||| ||||||||    
T  50864950 ttttcattttggtcccataattaataaaacacacgtttt 50864988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 186
Target Start/End: Complemental strand, 50866405 - 50866367
Alignment:
Q  148 ttttcattttggtcccataactaataaaactcacgtttt 186  Q
    |||||||||||||||||||| ||||||||| ||||||||    
T  50866405 ttttcattttggtcccataattaataaaacacacgtttt 50866367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 304
Target Start/End: Original strand, 55423511 - 55423585
Alignment:
Q  230 gttaattttaaccccaaatgtttaagatggaacaacattgtagatggtctatcatagaccttattaattttttaa 304  Q
    ||||| || |||||||||||| | || |||| |||| |||||| ||||| | | |||||||||||||||||||||    
T  55423511 gttaacttcaaccccaaatgtcttaggtggaccaaccttgtaggtggtccaccgtagaccttattaattttttaa 55423585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 190
Target Start/End: Complemental strand, 9338551 - 9338474
Alignment:
Q  113 ttaataagtcatttgatcctccaattaattttcagttttcattttggtcccataactaataaaactcacgttttggtc 190  Q
    |||||| |||||||  |||||  ||||||||||| |||| ||||| ||  ||||| |||||||||||| |||||||||    
T  9338551 ttaataggtcatttagtcctctgattaattttcaattttaattttagtttcataattaataaaactcatgttttggtc 9338474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 186
Target Start/End: Original strand, 18442269 - 18442326
Alignment:
Q  129 tcctccaattaattttcagttttcattttggtcccataactaataaaactcacgtttt 186  Q
    ||||| || ||||||  ||||||||||||||||||| || ||||||||| ||||||||    
T  18442269 tcctctaaataatttcaagttttcattttggtcccacaattaataaaacccacgtttt 18442326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 186
Target Start/End: Original strand, 19487343 - 19487400
Alignment:
Q  129 tcctccaattaattttcagttttcattttggtcccataactaataaaactcacgtttt 186  Q
    ||||| || ||||||  ||||||||||||||||||| || ||||||||| ||||||||    
T  19487343 tcctctaaataatttcaagttttcattttggtcccacaattaataaaacccacgtttt 19487400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 315
Target Start/End: Original strand, 21128045 - 21128126
Alignment:
Q  235 ttttaaccccaaatgtttaagatggaacaacattgtagatggtctatcatagaccttattaa-ttttttaaatttaaccatt 315  Q
    ||||||||| |||||| |||| |||| ||||||| ||| ||||| | |||||||||||  || |||||||| ||||||||||    
T  21128045 ttttaaccctaaatgtctaaggtggaccaacattataggtggtccaccatagaccttacaaagttttttaattttaaccatt 21128126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 325
Target Start/End: Original strand, 34818250 - 34818299
Alignment:
Q  277 tctatcatagaccttattaatttt-ttaaatttaaccattagatctattt 325  Q
    |||||||||||||||||||||||| |||| ||||||| || |||||||||    
T  34818250 tctatcatagaccttattaattttgttaattttaaccgttcgatctattt 34818299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 129 - 177
Target Start/End: Original strand, 34818103 - 34818151
Alignment:
Q  129 tcctccaattaattttcagttttcattttggtcccataactaataaaac 177  Q
    ||||| |||||||||  ||||||||||||||||||| || |||||||||    
T  34818103 tcctctaattaatttcaagttttcattttggtcccacaattaataaaac 34818151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 325
Target Start/End: Complemental strand, 35372114 - 35372062
Alignment:
Q  274 tggtctatcatagaccttattaatttt-ttaaatttaaccattagatctattt 325  Q
    ||||| ||| ||||||||||||||||| |||| |||||||||| |||||||||    
T  35372114 tggtccatcgtagaccttattaattttgttaattttaaccattcgatctattt 35372062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 325
Target Start/End: Original strand, 41263799 - 41263851
Alignment:
Q  274 tggtctatcatagaccttattaatttt-ttaaatttaaccattagatctattt 325  Q
    ||||||||  ||||||||||||||||| |||| |||||||||| |||||||||    
T  41263799 tggtctattctagaccttattaattttgttaattttaaccattcgatctattt 41263851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 325
Target Start/End: Original strand, 42592700 - 42592752
Alignment:
Q  274 tggtctatcatagaccttattaatttt-ttaaatttaaccattagatctattt 325  Q
    ||||||||  ||||||||||||||||| |||| |||||||||| |||||||||    
T  42592700 tggtctattctagaccttattaattttgttaattttaaccattcgatctattt 42592752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 42684902 - 42684950
Alignment:
Q  138 taattttcagttttcattttggtcccataactaataaaactcacgtttt 186  Q
    ||||||| ||||||||||||||| ||||||  ||||||||| |||||||    
T  42684902 taattttaagttttcattttggttccataatgaataaaactgacgtttt 42684950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2071 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold2071
Description:

Target: scaffold2071; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 109 - 190
Target Start/End: Complemental strand, 800 - 719
Alignment:
Q  109 tggcttaataagtcatttgatcctccaattaattttcagttttcattttggtcccataactaataaaactcacgttttggtc 190  Q
    |||||||||| |||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  800 tggcttaataggtcatttggtcctctaattaatttccagttttcattttggtcccataactaataaaactcatgttttggtc 719  T

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Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 136 - 223
Target Start/End: Complemental strand, 45396109 - 45396023
Alignment:
Q  136 attaattttcagttttcattttggtcccataactaataaaactcacgttttggtcagccaattttacgtccgtcagtcaaattggtcc 223  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |  | | ||||||||||||||||||||||||    
T  45396109 attaattttcagttttcattttggtcccataactaaaaaaactcacgtttcggtca-cttaatatacgtccgtcagtcaaattggtcc 45396023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 109 - 190
Target Start/End: Original strand, 38696305 - 38696386
Alignment:
Q  109 tggcttaataagtcatttgatcctccaattaattttcagttttcattttggtcccataactaataaaactcacgttttggtc 190  Q
    |||||||||| | |||||| ||| | |||||||||| |||||||||||||||| |||||||||||||||||| |||||||||    
T  38696305 tggcttaataggccatttggtcccctaattaattttaagttttcattttggtctcataactaataaaactcatgttttggtc 38696386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 110 - 187
Target Start/End: Complemental strand, 38697124 - 38697047
Alignment:
Q  110 ggcttaataagtcatttgatcctccaattaattttcagttttcattttggtcccataactaataaaactcacgttttg 187  Q
    |||||||||  ||||||| |||  |||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  38697124 ggcttaatagctcatttggtccctcaattaatttccagttttcattttggtcccataactaataaaactcatgttttg 38697047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 110 - 190
Target Start/End: Complemental strand, 41743733 - 41743653
Alignment:
Q  110 ggcttaataagtcatttgatcctccaattaattttcagttttcattttggtcccataactaataaaactcacgttttggtc 190  Q
    ||||||||| |||||||| ||||  |||||||||| |||||||||||||||||||||| |||||||||| | |||||||||    
T  41743733 ggcttaataggtcatttggtcctttaattaattttaagttttcattttggtcccataagtaataaaacttatgttttggtc 41743653  T

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Target: chr8; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 110 - 190
Target Start/End: Complemental strand, 45437600 - 45437520
Alignment:
Q  110 ggcttaataagtcatttgatcctccaattaattttcagttttcattttggtcccataactaataaaactcacgttttggtc 190  Q
    ||||||||| |||||||||||| | |||||||||  ||||||||||||| |||||||| |||||||||||| |||||||||    
T  45437600 ggcttaataggtcatttgatcccctaattaatttcaagttttcattttgatcccataattaataaaactcatgttttggtc 45437520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 110 - 185
Target Start/End: Complemental strand, 42878934 - 42878859
Alignment:
Q  110 ggcttaataagtcatttgatcctccaattaattttcagttttcattttggtcccataactaataaaactcacgttt 185  Q
    ||||||||| |||||||| ||| | |||||||||  ||||||||||||||||||||||||||| ||||||| ||||    
T  42878934 ggcttaataggtcatttggtcccctaattaatttcaagttttcattttggtcccataactaatgaaactcatgttt 42878859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 110 - 190
Target Start/End: Original strand, 28734986 - 28735066
Alignment:
Q  110 ggcttaataagtcatttgatcctccaattaattttcagttttcattttggtcccataactaataaaactcacgttttggtc 190  Q
    ||||||||| ||||||||||   | |||||||||| ||| ||||||||||| |||||| |||||||||||| |||||||||    
T  28734986 ggcttaataggtcatttgatttcctaattaattttaagtgttcattttggttccataattaataaaactcatgttttggtc 28735066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 121 - 189
Target Start/End: Original strand, 45394976 - 45395044
Alignment:
Q  121 tcatttgatcctccaattaattttcagttttcattttggtcccataactaataaaactcacgttttggt 189  Q
    |||||||||||   |||||||||| ||||||||||||| |||||||| |||||||||||| ||||||||    
T  45394976 tcatttgatcccttaattaattttaagttttcattttgatcccataattaataaaactcatgttttggt 45395044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 135 - 190
Target Start/End: Original strand, 42877642 - 42877697
Alignment:
Q  135 aattaattttcagttttcattttggtcccataactaataaaactcacgttttggtc 190  Q
    |||||||||  |||||||||||||||| |||||||||||||||||| |||||||||    
T  42877642 aattaatttcaagttttcattttggtctcataactaataaaactcatgttttggtc 42877697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 190
Target Start/End: Complemental strand, 17702368 - 17702313
Alignment:
Q  135 aattaattttcagttttcattttggtcccataactaataaaactcacgttttggtc 190  Q
    ||||||||| || ||||||||||||||||||||||||||||||  | |||||||||    
T  17702368 aattaatttccaattttcattttggtcccataactaataaaacctatgttttggtc 17702313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 190
Target Start/End: Complemental strand, 34504733 - 34504678
Alignment:
Q  135 aattaattttcagttttcattttggtcccataactaataaaactcacgttttggtc 190  Q
    ||||||||||||||||| ||||| ||| ||||||||||||||| || |||||||||    
T  34504733 aattaattttcagtttttattttagtctcataactaataaaacacatgttttggtc 34504678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 325
Target Start/End: Original strand, 32797256 - 32797354
Alignment:
Q  228 ccgttaattttaaccccaaatgtttaagatggaacaacattgtagatggtctatcatagaccttattaatttt-ttaaatttaaccattagatctattt 325  Q
    ||||||| |||||| |||||||| || |||||| |||| ||  | |||||  ||| ||||||||||||||||| |||| |||||||||| |||||||||    
T  32797256 ccgttaagtttaactccaaatgtctatgatggatcaaccttaaaaatggttcatcgtagaccttattaattttgttaattttaaccattcgatctattt 32797354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 163
Target Start/End: Complemental strand, 45396167 - 45396113
Alignment:
Q  109 tggcttaataagtcatttgatcctccaattaattttcagttttcattttggtccc 163  Q
    |||| ||||| |||||||| ||| |||||||||||||| ||||||||||||||||    
T  45396167 tggcataataggtcatttggtcccccaattaattttcaattttcattttggtccc 45396113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 231 - 308
Target Start/End: Original strand, 28735109 - 28735186
Alignment:
Q  231 ttaattttaaccccaaatgtttaagatggaacaacattgtagatggtctatcatagaccttattaattttttaaattt 308  Q
    |||| ||||||||||||||| ||  ||| | ||| ||||||| ||||| |||||||||| |||||||||||| |||||    
T  28735109 ttaagtttaaccccaaatgtctatcatgaaccaaaattgtaggtggtccatcatagaccatattaattttttcaattt 28735186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 129 - 190
Target Start/End: Original strand, 32693847 - 32693908
Alignment:
Q  129 tcctccaattaattttcagttttcattttggtcccataactaataaaactcacgttttggtc 190  Q
    ||||| |||||||||| ||||||||||||||||||| || |||||||||  ||| |||||||    
T  32693847 tcctctaattaattttaagttttcattttggtcccacaattaataaaacatacgctttggtc 32693908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 230 - 332
Target Start/End: Complemental strand, 26697831 - 26697728
Alignment:
Q  230 gttaattttaaccccaaatgtttaagatggaacaacattgtagatggtctatcatagaccttattaattttttaaattta-accattagatctatttttc 328  Q
    ||||| |||||||||||||||||| | |||| ||||||| || || ||| | |||||||| || |||||| || |||||| |||||| ||| |||||||     
T  26697831 gttaagtttaaccccaaatgtttatggtggaccaacattatatatagtccaccatagaccctagtaatttctttaatttataccattcgatttatttttt 26697732  T
Q  329 aaaa 332  Q
    ||||    
T  26697731 aaaa 26697728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 90
Target Start/End: Original strand, 12838649 - 12838707
Alignment:
Q  32 gttatattgtcggtgtcaatgaaaaaaataattctggttagtttgatttattataattt 90  Q
    |||||||||| ||| ||| |||||||||||||  | ||||||||||||| |||||||||    
T  12838649 gttatattgttggtttcattgaaaaaaataatcattgttagtttgatttgttataattt 12838707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 190
Target Start/End: Complemental strand, 14840979 - 14840937
Alignment:
Q  148 ttttcattttggtcccataactaataaaactcacgttttggtc 190  Q
    ||||||||||||| ||||||||||||||| ||| |||||||||    
T  14840979 ttttcattttggtaccataactaataaaattcatgttttggtc 14840937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 186
Target Start/End: Original strand, 28418842 - 28418880
Alignment:
Q  148 ttttcattttggtcccataactaataaaactcacgtttt 186  Q
    |||||||||||||||||||| ||||||||| ||||||||    
T  28418842 ttttcattttggtcccataattaataaaacacacgtttt 28418880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 186
Target Start/End: Complemental strand, 28420254 - 28420216
Alignment:
Q  148 ttttcattttggtcccataactaataaaactcacgtttt 186  Q
    |||||||||||||||||||| ||||||||| ||||||||    
T  28420254 ttttcattttggtcccataattaataaaacacacgtttt 28420216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 176
Target Start/End: Complemental strand, 30787690 - 30787652
Alignment:
Q  138 taattttcagttttcattttggtcccataactaataaaa 176  Q
    ||||||| |||||||||||||||||||||| ||||||||    
T  30787690 taattttaagttttcattttggtcccataattaataaaa 30787652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 315
Target Start/End: Complemental strand, 24069442 - 24069361
Alignment:
Q  235 ttttaaccccaaatgtttaagatggaacaacattgtagatggtctatcatagaccttattaa-ttttttaaatttaaccatt 315  Q
    ||||||| | |||||| |||| |||| ||||||| ||| ||||| | ||||||||||| ||| |||||||| ||||||||||    
T  24069442 ttttaacactaaatgtctaaggtggaccaacattataggtggtccaccatagaccttactaagttttttaattttaaccatt 24069361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 315
Target Start/End: Original strand, 39515319 - 39515400
Alignment:
Q  235 ttttaaccccaaatgtttaagatggaacaacattgtagatggtctatcatagaccttattaa-ttttttaaatttaaccatt 315  Q
    ||||||| | |||||| |||| |||| ||||||| ||| ||||| ||||||||||||| ||| |||| ||| ||||||||||    
T  39515319 ttttaacactaaatgtctaaggtggaccaacattataggtggtccatcatagaccttactaagttttataattttaaccatt 39515400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 389
Target Start/End: Complemental strand, 44076300 - 44076200
Alignment:
Q  289 cttattaattttttaaatttaa-ccattagatctatttttcaaaacaaaaaacgttagatcaaaaaggtctattgtatcatacaatgaaccatcaacaac 387  Q
    |||||||||||||| ||||||| ||||| ||||||||| | ||||||  || |||| |||||  | ||| |||||||||||| | |||| ||||||||||    
T  44076300 cttattaatttttttaatttaaaccatttgatctatttattaaaacacgaaccgtttgatcacga-ggtttattgtatcatatagtgaatcatcaacaac 44076202  T
Q  388 ta 389  Q
    ||    
T  44076201 ta 44076200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 315
Target Start/End: Original strand, 45395085 - 45395170
Alignment:
Q  230 gttaattttaaccccaaatgtttaagatggaacaacattgtagatggtctatcatagaccttattaattttttaaatttaaccatt 315  Q
    ||||| |||||| |||||| | || | |||| ||| ||||||| ||||| |||||||||| ||||||||||| || || |||||||    
T  45395085 gttaactttaactccaaatatctatggtggaccaatattgtaggtggtccatcatagaccgtattaatttttaaatttaaaccatt 45395170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 325
Target Start/End: Original strand, 32693991 - 32694043
Alignment:
Q  274 tggtctatcatagaccttattaatttt-ttaaatttaaccattagatctattt 325  Q
    ||| ||||||||||||||||||||||| |||| ||||||| || |||||||||    
T  32693991 tggcctatcatagaccttattaattttattaattttaaccgtttgatctattt 32694043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 325
Target Start/End: Complemental strand, 42100061 - 42100009
Alignment:
Q  274 tggtctatcatagaccttattaatttt-ttaaatttaaccattagatctattt 325  Q
    ||||| ||| ||||||||||||||||| |||| |||||||||| |||||||||    
T  42100061 tggtccatcgtagaccttattaattttgttaattttaaccattcgatctattt 42100009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1251 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold1251
Description:

Target: scaffold1251; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 110 - 217
Target Start/End: Complemental strand, 1203 - 1096
Alignment:
Q  110 ggcttaataagtcatttgatcctccaattaattttcagttttcattttggtcccataactaataaaactcacgttttggtcagccaattttacgtccgtc 209  Q
    ||||||||| |||||||| |||  ||| |||||| ||||||||||||||||||||||| |||||||||||| |||||||||   ||| || || ||||||    
T  1203 ggcttaataggtcatttggtccctcaaataatttccagttttcattttggtcccataagtaataaaactcatgttttggtccctcaaattcacctccgtc 1104  T
Q  210 agtcaaat 217  Q
    ||||||||    
T  1103 agtcaaat 1096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 110 - 327
Target Start/End: Complemental strand, 9662354 - 9662138
Alignment:
Q  110 ggcttaataagtcatttgatcctccaattaattttcagttttcattttggtcccataactaataaaactcacgttttggtcagccaattttacgtccgtc 209  Q
    ||||||||| |||||||| ||||| |||||||||  ||||||||| || || |||||||||| |||||||| |||||||||   ||  |||   ||||||    
T  9662354 ggcttaataggtcatttggtcctctaattaatttcaagttttcatcttagttccataactaaaaaaactcatgttttggtccctcacgtttgtctccgtc 9662255  T
Q  210 agtcaaattggtcccattccgttaattttaaccccaaatgtttaagatggaacaacattgtagatggtctatcatagaccttattaattttttaaattta 309  Q
     |||||||   ||| |  | ||||| ||||||  ||||||| || | |||| ||||||| ||||| ||| | |||||||||||||||||||| || ||||    
T  9662254 ggtcaaataaatcc-agactgttaaatttaacttcaaatgtctatggtggaccaacattatagatagtccaccatagaccttattaatttttcaatttta 9662156  T
Q  310 accattagatctattttt 327  Q
    |||||| ||||| |||||    
T  9662155 accatttgatcttttttt 9662138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 110 - 190
Target Start/End: Original strand, 38539669 - 38539749
Alignment:
Q  110 ggcttaataagtcatttgatcctccaattaattttcagttttcattttggtcccataactaataaaactcacgttttggtc 190  Q
    ||||||||| ||||||||||||   |||||||||  |||||||||||||||||||||| |||||||||||| |||||||||    
T  38539669 ggcttaataggtcatttgatcccttaattaatttcaagttttcattttggtcccataaataataaaactcatgttttggtc 38539749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 110 - 190
Target Start/End: Original strand, 25533186 - 25533266
Alignment:
Q  110 ggcttaataagtcatttgatcctccaattaattttcagttttcattttggtcccataactaataaaactcacgttttggtc 190  Q
    |||||||||||||||||| ||    |||||||||  ||||||||||||||||||||||||||||||| ||| |||||||||    
T  25533186 ggcttaataagtcatttggtctcttaattaatttcaagttttcattttggtcccataactaataaaattcatgttttggtc 25533266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 138 - 187
Target Start/End: Original strand, 46201157 - 46201206
Alignment:
Q  138 taattttcagttttcattttggtcccataactaataaaactcacgttttg 187  Q
    |||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  46201157 taattttcagttttcattttggtcccataagtaataaaactcatgttttg 46201206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 109 - 191
Target Start/End: Complemental strand, 46202402 - 46202320
Alignment:
Q  109 tggcttaataagtcatttgatcctccaattaattttcagttttcattttggtcccataactaataaaactcacgttttggtca 191  Q
    |||||||||| ||| ||||||||   || |||||| |||||||||||||| |||||||| |||||||||||| ||| ||||||    
T  46202402 tggcttaataggtcgtttgatcccttaaataatttacagttttcattttgatcccataagtaataaaactcatgttctggtca 46202320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 190
Target Start/End: Complemental strand, 35212 - 35131
Alignment:
Q  109 tggcttaataagtcatttgatcctccaattaattttcagttttcattttggtcccataactaataaaactcacgttttggtc 190  Q
    |||||||||| |||||||| |||   || |||||| || ||||||||||||||||||| ||||||||| ||| |||||||||    
T  35212 tggcttaataggtcatttggtcccttaaataatttccaattttcattttggtcccatatctaataaaagtcatgttttggtc 35131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 204 - 299
Target Start/End: Original strand, 26135733 - 26135828
Alignment:
Q  204 tccgtcagtcaaattggtcccattccgttaattttaaccccaaatgtttaagatggaacaacattgtagatggtctatcatagaccttattaattt 299  Q
    ||||| ||||||||| |||| |||  ||||||||||||  ||||||| ||||||||| | |||| |||  ||||| | ||||||||||||||||||    
T  26135733 tccgttagtcaaattagtcctattatgttaattttaacatcaaatgtctaagatggaccgacatggtaagtggtccaccatagaccttattaattt 26135828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 190
Target Start/End: Complemental strand, 47060568 - 47060513
Alignment:
Q  135 aattaattttcagttttcattttggtcccataactaataaaactcacgttttggtc 190  Q
    |||||||||| ||||||||||||||||| |||| |||||||||  |||||||||||    
T  47060568 aattaattttaagttttcattttggtcctataattaataaaacgtacgttttggtc 47060513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 94
Target Start/End: Original strand, 9334781 - 9334843
Alignment:
Q  32 gttatattgtcggtgtcaatgaaaaaaataattctggttagtttgatttattataatttaaaa 94  Q
    |||||||||| ||||||| ||||| |||||||| |  |||||||||||| |||||||||||||    
T  9334781 gttatattgttggtgtcattgaaataaataattatatttagtttgatttgttataatttaaaa 9334843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 190
Target Start/End: Original strand, 27752 - 27832
Alignment:
Q  110 ggcttaataagtcatttgatcctccaattaattttcagttttcattttggtcccataactaataaaactcacgttttggtc 190  Q
    ||||||||| |||||||| |||   || |||||| || ||||||||||||| ||||| ||||||||| ||| |||||||||    
T  27752 ggcttaataggtcatttggtcccttaaataatttccaattttcattttggttccatatctaataaaagtcatgttttggtc 27832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 235 - 310
Target Start/End: Original strand, 8661944 - 8662019
Alignment:
Q  235 ttttaaccccaaatgtttaagatggaacaacattgtagatggtctatcatagaccttattaattttttaaatttaa 310  Q
    ||||||||| ||||||||||| |||| ||| ||||||| ||||| | |||| |||||| ||| ||||| |||||||    
T  8661944 ttttaaccctaaatgtttaaggtggatcaaaattgtaggtggtccaccatataccttaataaattttttaatttaa 8662019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 135 - 170
Target Start/End: Complemental strand, 10942345 - 10942310
Alignment:
Q  135 aattaattttcagttttcattttggtcccataacta 170  Q
    |||||||||||||||||||||||| |||||||||||    
T  10942345 aattaattttcagttttcattttgatcccataacta 10942310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 32 - 87
Target Start/End: Original strand, 39151867 - 39151922
Alignment:
Q  32 gttatattgtcggtgtcaatgaaaaaaataattctggttagtttgatttattataa 87  Q
    |||||||||| ||||||| ||||| | |||||  ||||||||||||||||||||||    
T  39151867 gttatattgttggtgtcattgaaatatataatcatggttagtttgatttattataa 39151922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 296
Target Start/End: Original strand, 7354602 - 7354688
Alignment:
Q  210 agtcaaattggtcccattccgttaattttaaccccaaatgtttaagatggaacaacattgtagatggtctatcatagaccttattaa 296  Q
    |||||| |||||||  |||  |||| ||||||| ||||||| ||||||||| ||||||| ||  ||||| ||| |||||||||||||    
T  7354602 agtcaatttggtccacttcaattaactttaaccacaaatgtctaagatggaccaacattataagtggtccatcgtagaccttattaa 7354688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 94
Target Start/End: Complemental strand, 10199644 - 10199586
Alignment:
Q  36 tattgtcggtgtcaatgaaaaaaataattctggttagtttgatttattataatttaaaa 94  Q
    |||||||||||||  ||||| |||||||| | ||||||||||||| |||||| ||||||    
T  10199644 tattgtcggtgtcgttgaaataaataattattgttagtttgattttttataacttaaaa 10199586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 94
Target Start/End: Complemental strand, 20097897 - 20097835
Alignment:
Q  32 gttatattgtcggtgtcaatgaaaaaaataattctggttagtttgatttattataatttaaaa 94  Q
    |||||||||| ||| ||| ||||| | |||||| |  ||||||||||||||||||||||||||    
T  20097897 gttatattgttggtatcattgaaatagataattataattagtttgatttattataatttaaaa 20097835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 90
Target Start/End: Original strand, 4998271 - 4998328
Alignment:
Q  33 ttatattgtcggtgtcaatgaaaaaaataattctggttagtttgatttattataattt 90  Q
    ||||||||| ||||||| ||||| | |||||  ||||||||||||||| |||||||||    
T  4998271 ttatattgttggtgtcattgaaatagataatcatggttagtttgatttgttataattt 4998328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 310
Target Start/End: Original strand, 28325202 - 28325267
Alignment:
Q  245 aaatgtttaagatggaacaacattgtagatggtctatcatagaccttattaattttttaaatttaa 310  Q
    |||||| |||| |||| |||| |||||| ||||||| ||||||| |||||||  ||||||||||||    
T  28325202 aaatgtctaaggtggaccaactttgtaggtggtctaccatagactttattaaaattttaaatttaa 28325267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 186
Target Start/End: Complemental strand, 33779166 - 33779126
Alignment:
Q  146 agttttcattttggtcccataactaataaaactcacgtttt 186  Q
    |||||||||||||| |||| || ||||||||||||||||||    
T  33779166 agttttcattttggccccacaattaataaaactcacgtttt 33779126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 230 - 325
Target Start/End: Original strand, 43459572 - 43459668
Alignment:
Q  230 gttaattttaaccccaaatgtttaagatggaacaacattgtagatggtctatcatagaccttattaatttt-ttaaatttaaccattagatctattt 325  Q
    ||||| |||||| |||||||| || | |||| |||| ||  | |||||  ||| ||||||||||||||||| |||| |||||||||| |||||||||    
T  43459572 gttaagtttaactccaaatgtctatggtggatcaaccttaaaaatggtacatcgtagaccttattaattttgttaattttaaccattcgatctattt 43459668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 110 - 190
Target Start/End: Original strand, 127431 - 127511
Alignment:
Q  110 ggcttaataagtcatttgatcctccaattaattttcagttttcattttggtcccataactaataaaactcacgttttggtc 190  Q
    ||||||||| |||||||| ||| | |||||||||  ||||||| ||||||||||||||||||||||||||| |||||||||    
T  127431 ggcttaataggtcatttggtcccctaattaatttcaagttttcgttttggtcccataactaataaaactcatgttttggtc 127511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 110 - 190
Target Start/End: Complemental strand, 128709 - 128629
Alignment:
Q  110 ggcttaataagtcatttgatcctccaattaattttcagttttcattttggtcccataactaataaaactcacgttttggtc 190  Q
    ||||||||| |||||||| |||   |||||||||| ||||||||||||||||| || |||||||||||||| |||||||||    
T  128709 ggcttaataggtcatttggtcccttaattaattttaagttttcattttggtcctattactaataaaactcatgttttggtc 128629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 110 - 190
Target Start/End: Complemental strand, 15746884 - 15746804
Alignment:
Q  110 ggcttaataagtcatttgatcctccaattaattttcagttttcattttggtcccataactaataaaactcacgttttggtc 190  Q
    ||||||||| |||||||| ||| | ||||||||| || |||||||||||||||||||| |||||||||||| |||||||||    
T  15746884 ggcttaataggtcatttggtcccctaattaatttccaattttcattttggtcccataagtaataaaactcatgttttggtc 15746804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 110 - 190
Target Start/End: Original strand, 46467144 - 46467224
Alignment:
Q  110 ggcttaataagtcatttgatcctccaattaattttcagttttcattttggtcccataactaataaaactcacgttttggtc 190  Q
    ||||||||| |||| ||||||||  |||||||||  ||||||||||||||||||||||||||||||||||| |||| ||||    
T  46467144 ggcttaataggtcaattgatcctttaattaatttcaagttttcattttggtcccataactaataaaactcatgtttcggtc 46467224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 109 - 186
Target Start/End: Complemental strand, 48097150 - 48097073
Alignment:
Q  109 tggcttaataagtcatttgatcctccaattaattttcagttttcattttggtcccataactaataaaactcacgtttt 186  Q
    |||||||||| |||||||  ||||| ||||||||| || |||| |||||||||||||||||||||||||||| |||||    
T  48097150 tggcttaataggtcatttagtcctctaattaatttccaatttttattttggtcccataactaataaaactcatgtttt 48097073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 110 - 190
Target Start/End: Original strand, 20064174 - 20064254
Alignment:
Q  110 ggcttaataagtcatttgatcctccaattaattttcagttttcattttggtcccataactaataaaactcacgttttggtc 190  Q
    |||||||||  ||||||| |||  |||||||||| | |||||||||||||||||||| |||||||||| ||||||||||||    
T  20064174 ggcttaatagctcatttggtccctcaattaatttcccgttttcattttggtcccatatctaataaaacacacgttttggtc 20064254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 135 - 185
Target Start/End: Original strand, 835268 - 835318
Alignment:
Q  135 aattaattttcagttttcattttggtcccataactaataaaactcacgttt 185  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  835268 aattaatttgcagttttcattttggtctcataactaataaaactcacgttt 835318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 109 - 190
Target Start/End: Original strand, 42244628 - 42244709
Alignment:
Q  109 tggcttaataagtcatttgatcctccaattaattttcagttttcattttggtcccataactaataaaactcacgttttggtc 190  Q
    |||||||||| |||||||| ||||  |||||||||  | ||||||||||| |||||||| |||||||||||| |||||||||    
T  42244628 tggcttaataggtcatttggtcctttaattaatttcaaattttcattttgatcccataattaataaaactcatgttttggtc 42244709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 110 - 190
Target Start/End: Original strand, 15743274 - 15743354
Alignment:
Q  110 ggcttaataagtcatttgatcctccaattaattttcagttttcattttggtcccataactaataaaactcacgttttggtc 190  Q
    ||||||||| || ||||| ||||| ||||||||| || |||| ||||||||| ||||| |||||||||||| |||||||||    
T  15743274 ggcttaataggttatttggtcctctaattaatttccaatttttattttggtctcataagtaataaaactcatgttttggtc 15743354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 110 - 190
Target Start/End: Complemental strand, 46318735 - 46318655
Alignment:
Q  110 ggcttaataagtcatttgatcctccaattaattttcagttttcattttggtcccataactaataaaactcacgttttggtc 190  Q
    ||||||||| |||||||| ||||  |||||||||  |||||| ||||| |||||||||||||||||| ||| |||||||||    
T  46318735 ggcttaataggtcatttggtcctttaattaatttcaagttttgatttttgtcccataactaataaaagtcatgttttggtc 46318655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 129 - 176
Target Start/End: Complemental strand, 836292 - 836245
Alignment:
Q  129 tcctccaattaattttcagttttcattttggtcccataactaataaaa 176  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  836292 tcctctaattaattttcagttttcattttggtctcataactaataaaa 836245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 332
Target Start/End: Complemental strand, 19466201 - 19466104
Alignment:
Q  235 ttttaaccccaaatgtttaagatggaacaacattgtagatggtctatcatagaccttattaattttttaaatttaaccattagatctatttttcaaaa 332  Q
    |||||||| ||||||| || | ||||  |||||| ||||| ||| | ||||||||||||||||||||||| || | ||||| ||||||||||| ||||    
T  19466201 ttttaacctcaaatgtctatggtggactaacattatagatagtccaccatagaccttattaattttttaatttcagccatttgatctatttttaaaaa 19466104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 204 - 332
Target Start/End: Original strand, 21507157 - 21507285
Alignment:
Q  204 tccgtcagtcaaattggtcccattccgttaattttaaccccaaatgtttaagatggaacaacattgtagatggtctatcatagaccttattaatttttta 303  Q
    |||||||||||| ||| |||   || ||||| |||||  |||||||| | || |||| ||||| ||||| ||||| ||| ||||||||||||||||||||    
T  21507157 tccgtcagtcaatttgatccacgtcagttaactttaattccaaatgtattaggtggaccaacaatgtaggtggtccatcgtagaccttattaatttttta 21507256  T
Q  304 aatttaaccattagatctatttttcaaaa 332  Q
    | || | || || ||||| ||||||||||    
T  21507257 atttcagccgtttgatctttttttcaaaa 21507285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 235 - 326
Target Start/End: Original strand, 36509931 - 36510022
Alignment:
Q  235 ttttaaccccaaatgtttaagatggaacaacattgtagatggtctatcatagaccttattaattttttaaatttaaccattagatctatttt 326  Q
    |||||||| ||||||| || | ||||  |||||| |||||  || | ||||||||||||||||||||||| |||| ||||| ||||||||||    
T  36509931 ttttaacctcaaatgtctatggtggactaacattatagatattccaccatagaccttattaattttttaattttagccatttgatctatttt 36510022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 32 - 87
Target Start/End: Complemental strand, 43723870 - 43723815
Alignment:
Q  32 gttatattgtcggtgtcaatgaaaaaaataattctggttagtttgatttattataa 87  Q
    |||||||||| ||||||| ||||| |||||||  ||||||||||||||||||||||    
T  43723870 gttatattgttggtgtcattgaaataaataatcatggttagtttgatttattataa 43723815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 111 - 190
Target Start/End: Complemental strand, 46468836 - 46468757
Alignment:
Q  111 gcttaataagtcatttgatcctccaattaattttcagttttcattttggtcccataactaataaaactcacgttttggtc 190  Q
    |||||||| |||||||| | ||  |||||||||  | |||| |||||||||||||||||||||||||||| |||| ||||    
T  46468836 gcttaataggtcatttggttctttaattaatttcaaatttttattttggtcccataactaataaaactcatgtttcggtc 46468757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 186
Target Start/End: Complemental strand, 51042435 - 51042384
Alignment:
Q  135 aattaattttcagttttcattttggtcccataactaataaaactcacgtttt 186  Q
    ||||||||| || ||||||||||||||||| || ||||||||||||||||||    
T  51042435 aattaatttccaattttcattttggtcccacaattaataaaactcacgtttt 51042384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 296
Target Start/End: Complemental strand, 16757522 - 16757456
Alignment:
Q  230 gttaattttaaccccaaatgtttaagatggaacaacattgtagatggtctatcatagaccttattaa 296  Q
    ||||| ||||||| ||||||| ||||||||| ||||||| ||  ||||| |||||||||||||||||    
T  16757522 gttaactttaaccacaaatgtctaagatggaccaacattataagtggtccatcatagaccttattaa 16757456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 167
Target Start/End: Original strand, 18818973 - 18819031
Alignment:
Q  109 tggcttaataagtcatttgatcctccaattaattttcagttttcattttggtcccataa 167  Q
    |||||||||  ||| |||||||||  ||||||||||||||||||||| |||||||||||    
T  18818973 tggcttaattggtcttttgatcctttaattaattttcagttttcattatggtcccataa 18819031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 186
Target Start/End: Complemental strand, 30535761 - 30535711
Alignment:
Q  136 attaattttcagttttcattttggtcccataactaataaaactcacgtttt 186  Q
    ||||||||||||||||||||||||| |||||| |||||||||  |||||||    
T  30535761 attaattttcagttttcattttggttccataattaataaaaccaacgtttt 30535711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 113 - 190
Target Start/End: Complemental strand, 10722493 - 10722416
Alignment:
Q  113 ttaataagtcatttgatcctccaattaattttcagttttcattttggtcccataactaataaaactcacgttttggtc 190  Q
    ||||||||| ||||| ||  | |||||||||  |||||||||||| ||| |||||||| ||||||||| |||||||||    
T  10722493 ttaataagttatttggtctcctaattaatttcaagttttcattttcgtctcataactagtaaaactcatgttttggtc 10722416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 121 - 190
Target Start/End: Complemental strand, 20069994 - 20069925
Alignment:
Q  121 tcatttgatcctccaattaattttcagttttcattttggtcccataactaataaaactcacgttttggtc 190  Q
    ||||||| |||  |||||||||| | ||||||||||||||| |||| |||||||||| || |||||||||    
T  20069994 tcatttggtccctcaattaatttcccgttttcattttggtctcatatctaataaaacacatgttttggtc 20069925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 325
Target Start/End: Original strand, 16963951 - 16964047
Alignment:
Q  230 gttaattttaaccccaaatgtttaagatggaacaacattgtagatggtctatcatagaccttattaatttt-ttaaatttaaccattagatctattt 325  Q
    ||||| |||||| | ||||||||| |||||| |||| ||  |  ||||| ||||||||||||||||||||| |||| ||||||| || |||||||||    
T  16963951 gttaactttaactctaaatgtttatgatggaccaaccttaaaagtggtccatcatagaccttattaattttgttaattttaacccttcgatctattt 16964047  T

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Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 190
Target Start/End: Complemental strand, 24499737 - 24499693
Alignment:
Q  146 agttttcattttggtcccataactaataaaactcacgttttggtc 190  Q
    |||||||||||||||| || || ||||||||||||||||||||||    
T  24499737 agttttcattttggtctcacaattaataaaactcacgttttggtc 24499693  T

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Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 32 - 87
Target Start/End: Original strand, 34748898 - 34748953
Alignment:
Q  32 gttatattgtcggtgtcaatgaaaaaaataattctggttagtttgatttattataa 87  Q
    |||||||||||||||||| ||||| | |||||  |||||||||| |||||||||||    
T  34748898 gttatattgtcggtgtcattgaaatagataatcatggttagtttcatttattataa 34748953  T

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Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 94
Target Start/End: Original strand, 12267145 - 12267207
Alignment:
Q  32 gttatattgtcggtgtcaatgaaaaaaataattctggttagtttgatttattataatttaaaa 94  Q
    |||||||||| ||||||| ||||| | |||||  || |||||||||||| |||||||||||||    
T  12267145 gttatattgttggtgtcattgaaatagataatcatgattagtttgatttgttataatttaaaa 12267207  T

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Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 94
Target Start/End: Complemental strand, 13262809 - 13262747
Alignment:
Q  32 gttatattgtcggtgtcaatgaaaaaaataattctggttagtttgatttattataatttaaaa 94  Q
    |||||||||| ||||||| || || | |||||  ||||||||||||||| |||||||||||||    
T  13262809 gttatattgttggtgtcattgtaatagataatgatggttagtttgattttttataatttaaaa 13262747  T

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Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 321
Target Start/End: Complemental strand, 7161294 - 7161229
Alignment:
Q  257 tggaacaacattgtagatggtctatcatagaccttattaattttttaaa-tttaaccattagatct 321  Q
    |||| ||||||| ||||| ||| | ||||||||||| |||||||| ||| ||||||||||||||||    
T  7161294 tggaccaacattatagatagtccaccatagaccttaataatttttaaaattttaaccattagatct 7161229  T

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Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 308
Target Start/End: Original strand, 7819359 - 7819436
Alignment:
Q  231 ttaattttaaccccaaatgtttaagatggaacaacattgtagatggtctatcatagaccttattaattttttaaattt 308  Q
    |||||||||| || |||| | |||| |||| ||||||||||  || || |||||||| |||||||| |||||||||||    
T  7819359 ttaattttaatccaaaatatctaagttggatcaacattgtaagtgatccatcatagatcttattaactttttaaattt 7819436  T

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Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 190
Target Start/End: Complemental strand, 15072889 - 15072828
Alignment:
Q  129 tcctccaattaattttcagttttcattttggtcccataactaataaaactcacgttttggtc 190  Q
    ||||| |||||||||  ||||||||||||||||||| || |||||||||  || ||||||||    
T  15072889 tcctctaattaatttcaagttttcattttggtcccacaattaataaaacgtacattttggtc 15072828  T

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Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 186
Target Start/End: Original strand, 16123300 - 16123361
Alignment:
Q  125 ttgatcctccaattaattttcagttttcattttggtcccataactaataaaactcacgtttt 186  Q
    ||||||||| || ||||||  ||||||||||||||| ||| || |||||||| |||||||||    
T  16123300 ttgatcctctaaataatttaaagttttcattttggttccacaattaataaaattcacgtttt 16123361  T

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Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 227 - 327
Target Start/End: Original strand, 835390 - 835489
Alignment:
Q  227 tccgttaattttaaccccaaatgtttaagatggaacaacattgtagatggtctatcatagaccttattaattttttaaatttaaccattagatctatttt 326  Q
    |||||||| ||||||  ||||| |||| |||| | ||||||| ||||| ||| |||||||||| ||| ||||||| || ||||||| || ||||| ||||    
T  835390 tccgttaactttaacttcaaatatttatgatgaaccaacattatagattgtccatcatagacc-tataaatttttcaattttaaccctttgatctttttt 835488  T

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Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 187
Target Start/End: Original strand, 10711809 - 10711861
Alignment:
Q  135 aattaattttcagttttcattttggtcccataactaataaaactcacgttttg 187  Q
    |||||||||  |||||||||||| ||| |||||||| ||||||||| ||||||    
T  10711809 aattaatttgaagttttcattttcgtctcataactagtaaaactcatgttttg 10711861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 176
Target Start/End: Complemental strand, 28757103 - 28757039
Alignment:
Q  112 cttaataagtcatttgatcctccaattaattttcagttttcattttggtcccataactaataaaa 176  Q
    |||||| || ||||||||||   ||||||||||||| ||| ||||||||||| ||| ||||||||    
T  28757103 cttaattagacatttgatcccttaattaattttcaggttttattttggtcccctaattaataaaa 28757039  T

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Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 312
Target Start/End: Complemental strand, 30535653 - 30535585
Alignment:
Q  244 caaatgtttaagatggaacaacattgtagatggtctatcatagaccttattaattttttaaatttaacc 312  Q
    ||||||| || | |||| ||||||| ||||| ||| | ||||||||||||| ||||||||| |||||||    
T  30535653 caaatgtctatggtggaccaacattatagatagtccaccatagaccttatttattttttaattttaacc 30535585  T

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Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 190
Target Start/End: Complemental strand, 42246005 - 42245925
Alignment:
Q  110 ggcttaataagtcatttgatcctccaattaattttcagttttcattttggtcccataactaataaaactcacgttttggtc 190  Q
    |||||||||  |||||| ||||   |||||||||  |||||| |||||||| |||||| ||||||||||||  ||||||||    
T  42246005 ggcttaatagatcatttaatcccttaattaatttcaagtttttattttggttccataattaataaaactcatcttttggtc 42245925  T

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Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 187
Target Start/End: Original strand, 44276145 - 44276197
Alignment:
Q  135 aattaattttcagttttcattttggtcccataactaataaaactcacgttttg 187  Q
    ||||||||| || |||||||||||||| ||||| |||||||||  ||||||||    
T  44276145 aattaatttccatttttcattttggtctcataattaataaaacgtacgttttg 44276197  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 230 - 327
Target Start/End: Complemental strand, 7312281 - 7312184
Alignment:
Q  230 gttaattttaaccccaaatgtttaagatggaacaacattgtagatggtctatcatagaccttattaattttttaaatttaaccattagatctattttt 327  Q
    ||||| ||||||||||||||| | ||||||| ||||||||||| ||||  | | |||| |||||||||||||||| || ||||||| ||||| |||||    
T  7312281 gttaactttaaccccaaatgtattagatggaccaacattgtaggtggttcaccgtagatcttattaattttttaatttcaaccatttgatcttttttt 7312184  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 204 - 299
Target Start/End: Original strand, 136719 - 136814
Alignment:
Q  204 tccgtcagtcaaattggtcccattccgttaattttaaccccaaatgtttaagatggaacaacattgtagatggtctatcatagaccttattaattt 299  Q
    ||||| ||||||||| |||  |||||||||||||||||  ||||||| |||| |||| | |||| |||  ||||||| ||||||||||||||||||    
T  136719 tccgttagtcaaattagtcatattccgttaattttaacatcaaatgtctaaggtggaccgacatggtaagtggtctaccatagaccttattaattt 136814  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 230 - 332
Target Start/End: Original strand, 24757000 - 24757103
Alignment:
Q  230 gttaattttaaccccaaatgtttaagatggaacaacattgtagatggtctatcatagaccttattaatt-ttttaaatttaaccattagatctatttttc 328  Q
    ||||| ||||||| |||| || | ||||||| ||||||||||| ||||||| | ||||||||||||||| |||||| |||||| ||| ||||| ||| ||    
T  24757000 gttaactttaaccacaaaagtattagatggagcaacattgtaggtggtctaccttagaccttattaattcttttaattttaacaatttgatctttttatc 24757099  T
Q  329 aaaa 332  Q
    ||||    
T  24757100 aaaa 24757103  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 124 - 176
Target Start/End: Original strand, 35037145 - 35037197
Alignment:
Q  124 tttgatcctccaattaattttcagttttcattttggtcccataactaataaaa 176  Q
    |||| ||||| ||||||||||||||||||||||||||| ||||||| ||||||    
T  35037145 tttggtcctctaattaattttcagttttcattttggtctcataactcataaaa 35037197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 235 - 321
Target Start/End: Original strand, 12773190 - 12773277
Alignment:
Q  235 ttttaaccccaaatgtttaagatggaacaacattgtagatggtctatcatagaccttattaattttttaaattt-aaccattagatct 321  Q
    ||||||||  |||||| |||| |||| ||||||||||||  ||| | ||||||||||| | ||||||||||||| |||||||||||||    
T  12773190 ttttaaccttaaatgtctaaggtggatcaacattgtagactgtccaccatagaccttacttattttttaaatttgaaccattagatct 12773277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 210 - 299
Target Start/End: Original strand, 30231576 - 30231665
Alignment:
Q  210 agtcaaattggtcccattccgttaattttaaccccaaatgtttaagatggaacaacattgtagatggtctatcatagaccttattaattt 299  Q
    ||||||||| |||| |||||||||||||||||  ||||||| |||| || | |||||| |||  ||||| | |||||||||| |||||||    
T  30231576 agtcaaattagtcctattccgttaattttaacatcaaatgtctaaggtgaaccaacatggtaagtggtccaccatagaccttgttaattt 30231665  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 16208550 - 16208602
Alignment:
Q  138 taattttcagttttcattttggtcccataactaataaaactcacgttttggtc 190  Q
    ||||||||| |||| |||||||||||||| ||||||||| ||| |||||||||    
T  16208550 taattttcaatttttattttggtcccatatctaataaaagtcatgttttggtc 16208602  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 138 - 177
Target Start/End: Original strand, 7310302 - 7310341
Alignment:
Q  138 taattttcagttttcattttggtcccataactaataaaac 177  Q
    ||||||| |||||||||||||||||||||| |||||||||    
T  7310302 taattttaagttttcattttggtcccataattaataaaac 7310341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 263 - 334
Target Start/End: Complemental strand, 20489345 - 20489274
Alignment:
Q  263 aacattgtagatggtctatcatagaccttattaattttttaaatttaaccattagatctatttttcaaaaca 334  Q
    |||||| ||||||||||| | || |||| |||||||||||||| |||||||||  |||||||| | ||||||    
T  20489345 aacattatagatggtctaccgtaaacctcattaattttttaaacttaaccatttaatctatttgttaaaaca 20489274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 180
Target Start/End: Complemental strand, 7308565 - 7308495
Alignment:
Q  110 ggcttaataagtcatttgatcctccaattaattttcagttttcattttggtcccataactaataaaactca 180  Q
    ||||||||| ||||||||  ||   |||||||||  ||||||||||||||||| |||| ||||||||||||    
T  7308565 ggcttaataggtcatttggccccttaattaatttcaagttttcattttggtcctataagtaataaaactca 7308495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 240
Target Start/End: Original strand, 17593591 - 17593709
Alignment:
Q  122 catttgatcctccaattaattttcagttttcattttggtcccataactaataaaactcacgttttggtcagccaattttacgtccgtcagtcaaattggt 221  Q
    ||||||||||   ||||||||| ||| |||||||||||| || ||| |||||||| | ||||||| |||  | || | ||| ||||| |||||| |||||    
T  17593591 catttgatccctgaattaatttgcaggtttcattttggttccctaattaataaaagttacgttttagtcccctaaatatacttccgttagtcaatttggt 17593690  T
Q  222 cccattccgttaattttaa 240  Q
    |  | ||||||||||||||    
T  17593691 ctaactccgttaattttaa 17593709  T

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Target: scaffold0148 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 332
Target Start/End: Original strand, 14820 - 14921
Alignment:
Q  231 ttaattttaaccccaaatgtttaagatggaacaacattgtagatggtctatcatagaccttattaattttttaaatttaaccattagatctatttttcaa 330  Q
    |||| ||||||| | ||||| || |||||| ||| ||| |||||| || | ||||||| ||||||||||||||| || | ||||| ||||||||||||||    
T  14820 ttaactttaacctctaatgtctatgatggaccaatattatagatgatccaccatagacattattaattttttaatttaagccatttgatctatttttcaa 14919  T
Q  331 aa 332  Q
    ||    
T  14920 aa 14921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 112 - 180
Target Start/End: Complemental strand, 334220 - 334151
Alignment:
Q  112 cttaataagtcattt-gatcctccaattaattttcagttttcattttggtcccataactaataaaactca 180  Q
    ||||||| ||||||| ||||| | |||||||||  |||||||||||| || |||||||||||||||||||    
T  334220 cttaataggtcattttgatccccaaattaatttcaagttttcattttagttccataactaataaaactca 334151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 112 - 180
Target Start/End: Complemental strand, 44927 - 44858
Alignment:
Q  112 cttaataagtcattt-gatcctccaattaattttcagttttcattttggtcccataactaataaaactca 180  Q
    ||||||| ||||||| ||||| | |||||||||  |||||||||||| || |||||||||||||||||||    
T  44927 cttaataggtcattttgatccccaaattaatttcaagttttcattttagttccataactaataaaactca 44858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 176
Target Start/End: Original strand, 21149 - 21191
Alignment:
Q  134 caattaattttcagttttcattttggtcccataactaataaaa 176  Q
    ||||||||||||| |||||||||| ||||||||| ||||||||    
T  21149 caattaattttcatttttcattttagtcccataattaataaaa 21191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 189
Target Start/End: Original strand, 32595 - 32649
Alignment:
Q  135 aattaattttcagttttcattttggtcccataactaataaaactcacgttttggt 189  Q
    |||||||||  |||||| ||||||||| |||||||||||||||||  ||||||||    
T  32595 aattaatttcaagtttttattttggtcacataactaataaaactcgtgttttggt 32649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 327
Target Start/End: Original strand, 22099 - 22196
Alignment:
Q  231 ttaattttaaccccaaatgtttaagatggaacaacattgtagatggtctatcatagaccttattaattt-tttaaatttaaccattagatctattttt 327  Q
    |||| |||||||| |||||  || | |||| ||||||||||| ||||| | |||||||| ||||||||| ||||| || ||||||| ||| |||||||    
T  22099 ttaagtttaacccaaaatgcctatggtggaccaacattgtaggtggtccaccatagaccctattaatttctttaatttaaaccatttgatttattttt 22196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 178
Target Start/End: Original strand, 18825 - 18878
Alignment:
Q  125 ttgatcctccaattaattttcagttttcattttggtcccataactaataaaact 178  Q
    ||||||||  || ||||||| |||||||||||||||||||||  ||||||||||    
T  18825 ttgatcctttaaataattttaagttttcattttggtcccatatttaataaaact 18878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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