View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13096_high_28 (Length: 310)
Name: NF13096_high_28
Description: NF13096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13096_high_28 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 132 - 310
Target Start/End: Original strand, 44841915 - 44842093
Alignment:
| Q |
132 |
ctcaaccatctcttgattcatcaaataactactgtgatgcatgcaatcaattgcannnnnnnnnnnnnnnnnnnnnnnnatttattactttatcagccat |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
44841915 |
ctcaaccatctcttgattcatcaaataactactgtgatgcatgcaatcaattgcatttctttttctttttttagtttttatttattactttatcagccat |
44842014 |
T |
|
| Q |
232 |
taggaaattgttggcccatgtgtgaaactcaaactctaacactgagatgtccattatctaaagtctaataaacccaaaa |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44842015 |
taggaaattgttggcccatgtgtgaaactcaaactctaacactgagatgtccattatctaaagtctaataaacccaaaa |
44842093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 44841782 - 44841849
Alignment:
| Q |
1 |
caagttaatgtcaacaaacatttccaaggaatcatgacaattactactttgatgatgaaactatttcc |
68 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44841782 |
caagttaatgtcaacaaacatttccaaggaatcatgacaattactactttgatgatgaaactatttcc |
44841849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University